Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019677.1 Corchorus olitorius cultivar O-4 contig19710, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16935
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Found at i:3433 original size:2 final size:2
Alignment explanation
Indices: 3426--3456 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
3416 TTATAGCTTA
3426 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3457 AGAGTTTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6025 original size:325 final size:321
Alignment explanation
Indices: 5267--7811 Score: 2446
Period size: 325 Copynumber: 7.8 Consensus size: 321
5257 CTTGGAAACC
* * * * *
5267 TTAAATCGAAATAAGATTCAGATGCACGTAAAAATAAATCCTTAAATTCAATGTGGCTGTGATTT
1 TTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTT
* * *
5332 GATTAGATGAATAAAGATATTTCAAGGAGTCTTTATGCCAAAAACCATGCAAAACTGAGACGAGG
66 GGTTAGATGAATATAGATATTTCAAGGAGTCTTTA-GCCAAAAATCATGCAAAACTGAGACGAGG
* * * * * * *
5397 CCCCGAAACACATTTTTAACCAAAAACCATGATAGTTAGTAAACGATTTCGGCTAAAAATTGACC
130 CCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACC
5462 CGAAAAGTTTTTCCTCAA-TTTTTTGTCACAATACTCAGAAAAAATATATAATTCAACGCCAAAA
195 CGAAAAGTTTTT-CTCAATTTTTTTG-CACAATACTCAGAAAAAATATATAATTCAACGCC-AAA
* * **
5526 AAATTGAAGGGTTTTTCATGCTTCTAATAGCGTTTTTCCTTTTT-TTTTGGCCGAATTTATTTCT
257 AAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTT--TTTTTATTTTTTCCGAATTTATTTCT
5590 AA
320 AA
* * * *
5592 TTAAATAGAAACAAGATTCAGATGCTCGTACAATCAAATCCTTTAATCC-ATAGTGGCTGAGATT
1 TTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAT-GTGGCTGAGATT
* * * ** * * *
5656 TGGTTAGATGAATATAGATATTGCAAAGAGTCGTTCT-GCCAAAAATAATGCGCAACTAAGTCGG
65 TGGTTAGATGAATATAGATATTTCAAGGAGTC-TT-TAGCCAAAAATCATGCAAAACTGAGACGA
* * *
5720 GGCCCTGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATGATTTCGGCTAATAACTGA
128 GGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGA
* * * *
5785 CCCGAAGAGTTCTTTCTTAATTTTTTTGCAAAATAATCAGAAAAAATATATAATTCAACGCCAAA
193 CCCGAAAAGTT-TTTCTCAATTTTTTTGCACAATACTCAGAAAAAATATATAATTCAACGCCAAA
* * * * * *
5850 ATGATTGATGGGTTTTTCACGCTACCAATATTGTTTTTTTTTTCCATTTTTTCCGAATTAATTTC
257 A-AATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTTTTTT--ATTTTTTCCGAATTTATTTC
5915 TAA
319 TAA
* * *
5918 TTAAATCGAAACAAGATTCGGATGCTCGTAAAAACAAATTCTTATATCCAATGTGGCTGAGATTT
1 TTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTT
* * * * * *
5983 GGTTCGATGAATATAGATATTTCCAGGAGTCTTTACCCAAAAAATCATG-ATAA-TAGAGCCGAA
66 GGTTAGATGAATATAGATATTTCAAGGAGTCTTTAGCC-AAAAATCATGCAAAACT-GAGACGAG
* ** ** * * * *
6046 ACTTCGGTACGCGTTTTTAGCAAAAAACTGTGATTGTTAGTACACGATTTCGGTAAAAATTTTAC
129 GCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG--------CT--
**
6111 AAAAACTGACCAAAAAAGTTTTTCCTCAA-TTTTTTGCCACAATACTCA-AAAAATATATATAAT
184 AAAAACTGACCCGAAAAGTTTTT-CTCAATTTTTTTG-CACAATACTCAGAAAAA-ATATATAAT
* * ** *
6174 TCAACGCCAAAAATTTGAAGGGTTTCTCACGCTTCTAATATCG---TTTTTCCATTTTTACCGAA
246 TCAACGCCAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTTTTTTATTTTTTCCGAA
6236 TTTATTTCTAA
311 TTTATTTCTAA
* * * * * *
6247 TTAAATCGAAACAAGATTCAGA-GACTCGCAAAAATAAATTCTTAAATTCAATGTGGTTGATATT
1 TTAAATCGAAACAAGATTCAGATG-CTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATT
* *
6311 TGGTTAGATGAATATAGATATTTCAAGGACT-TTTATGCCAAAAACCATAG-AAAACTGAGACGA
65 TGGTTAGATGAATATAGATATTTCAAGGAGTCTTTA-GCCAAAAATCAT-GCAAAACTGAGACGA
* * * * * * *
6374 TGCCCCGAGACGCGTTTTAAGCAAAAAATCGTGATGATTAATAGTGTACACGATTTCAGCTAAAA
128 GGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATG-GT--TA--GTACACGATTTCGGCTAAAA
* *
6439 ACTAACCCG-AAAGCTTATTCCTCAA-TTTTTTGCCACAATACTCAGAAAAAATATATAATTCAA
188 ACTGACCCGAAAAG-TT-TTTCTCAATTTTTTTG-CACAATACTCAGAAAAAATATATAATTCAA
* * * ** ** *
6502 CACCAAAAAATTAAAGGGTTTTTAACGCTTCTAATATCG--TTTTTCGTATTTTTTCTAAATTAA
250 CGCCAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTTTTTTATTTTTTCCGAATTTA
* *
6565 ATTCTTA
315 TTTCTAA
* * *
6572 TTAAATCGAAATAAGATTCAGATGCACGTAAAAACAAATCCTTAAATTCAATGTGGCTGAGATTT
1 TTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTT
* * *
6637 GATTAGATGAATAAAGATATTTCAAGGAGTCTTTATGCCAAAAACCATGCAAAACTGAGACGAGG
66 GGTTAGATGAATATAGATATTTCAAGGAGTCTTTA-GCCAAAAATCATGCAAAACTGAGACGAGG
* * * * *
6702 CCCCGAAATGCG-TTTTAGCCAAAAAGCGTCA---TAAGTACACGATTTCGGCTAAAAATTGACC
130 CCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACC
* * *
6763 CGAAAATTTTTTCCTCAATTTTTGT-CACAATACGCAGAAAAAATATATAATTCAACGCCAAAAA
195 CGAAAAGTTTTT-CTCAATTTTTTTGCACAATACTCAGAAAAAATATATAATTCAACGCC-AAAA
* * ** *
6827 AATTGAAGGATTTTTCATGCTTCTAATATCGTTTTTCCTTTTT-TTTTGGCCAAATTTATTTCTA
258 AATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTT--TTTTTATTTTTTCCGAATTTATTTCTA
6891 A
321 A
* * * * *
6892 TTAAATAGAAACAAGATTCAGATGCTCGTACAATCATATCCTTTAATCC-ATAGTGGCTGAGATT
1 TTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAT-GTGGCTGAGATT
* * * * ** * * *
6956 TGGTTTGATGAATATAGATATTGCAAAGAGTCGTTCT-GCCAAAAATAATGCGCAACTAAGTCGG
65 TGGTTAGATGAATATAGATATTTCAAGGAGTC-TT-TAGCCAAAAATCATGCAAAACTGAGACGA
* * * * * * *
7020 GGCTCCGAAACGCGATGTTAGCCATAAACCGTGATGGTTAGTATATGATTTCGGCTAAAAATTGA
128 GGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGA
* * *
7085 CCCGAAGAGTTCTTTCTCAATTTTTTTGCAAAATAATCA-AAAAAATATATAATTCAACGCCAAA
193 CCCGAAAAGTT-TTTCTCAATTTTTTTGCACAATACTCAGAAAAAATATATAATTCAACGCCAAA
* * * *** *
7149 ATGATTGATGGGTTTTTCACGCTTCCAATATCGTTTTTCCATT-TTTTTTCCGAATTAATTTCTA
257 A-AATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTTTTTTATTTTTTCCGAATTTATTTCTA
7213 A
321 A
* * * * *
7214 TTAAATCGAAACAAGATTCGGATGCTCGTAAAAACAAATTCTTATATCCAATGTGACTAAGATTT
1 TTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTT
* * * *
7279 GGTTCGATGAATATAGATATTTCCAGGAGTCTTT-GCGCAAAAAATCATTG-AAAATTGAGCCGA
66 GGTTAGATGAATATAGATATTTCAAGGAGTCTTTAGC-C-AAAAATCA-TGCAAAACTGAGACGA
** * ** * * *
7342 AACTCCGGTACGCGTTTTTAGCCAACAACTGTGATTGTTAGTACACGATTTCGGCAAAAATTTTG
128 GGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGC--------T-
* *
7407 CAAAAACTGACCCAAAAAGTTTTTTCTCAATTTTTTTGC-CACATACTCAGAAAATATATATAAT
184 -AAAAACTGACCCGAAAAG-TTTTTCTCAATTTTTTTGCACA-ATACTCAGAAAAAATATATAAT
* * * *
7471 TCAACGCCAGAAAAATTGAAGGGTTTATCACGCTTCTAATATCG---TTTTTTCATTTTTACCAA
246 TCAACGCCA-AAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTTTTTTATTTTTTCCGA
7533 ATTTATTTCTAA
310 ATTTATTTCTAA
** * *
7545 TTAAATCGAAACAAGATTCAGA-GACTCACAAAAACAAATTCTTAAATCCAATGTGGCTGATATT
1 TTAAATCGAAACAAGATTCAGATG-CTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATT
* * * *
7609 TGGTTAGATGAATATAGATTTTTCATGGAGAT-TTTATGCC-AAAACCATACAAAACTGAGACGA
65 TGGTTAGATGAATATAGATATTTCAAGGAG-TCTTTA-GCCAAAAATCATGCAAAACTGAGACGA
* * * * * *
7672 GGCCCTGAGACGCGTTTTAAGCAAAAAATCGTGATGATTAATAGTGTACACGATTTCGGCTAAAA
128 GGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATG-GT--TA--GTACACGATTTCGGCTAAAA
* * * ** *
7737 ACTAACCCGAAAACTTATTCCTCAATTTTTTACCACAATACTCAGAAAAAAATATATAATTTAAC
188 ACTGACCCGAAAAGTT-TTTCTCAATTTTTTTGCACAATACTCAG-AAAAAATATATAATTCAAC
*
7802 GTCAAAAAAT
251 GCCAAAAAAT
7812 ACACCTTGAA
Statistics
Matches: 1819, Mismatches: 309, Indels: 184
0.79 0.13 0.08
Matches are distributed among these distances:
316 34 0.02
317 64 0.04
318 8 0.00
319 6 0.00
320 131 0.07
321 24 0.01
322 157 0.09
323 17 0.01
324 191 0.11
325 464 0.26
326 187 0.10
327 4 0.00
328 13 0.01
329 143 0.08
330 48 0.03
331 110 0.06
332 42 0.02
333 56 0.03
334 55 0.03
335 65 0.04
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (321 bp):
TTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTT
GGTTAGATGAATATAGATATTTCAAGGAGTCTTTAGCCAAAAATCATGCAAAACTGAGACGAGGC
CCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCC
GAAAAGTTTTTCTCAATTTTTTTGCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAT
TGAAGGGTTTTTCACGCTTCTAATATCGTTTTTTTTTTATTTTTTCCGAATTTATTTCTAA
Found at i:9801 original size:333 final size:325
Alignment explanation
Indices: 8908--10465 Score: 1354
Period size: 333 Copynumber: 4.8 Consensus size: 325
8898 TTCTTACGGA
* * *** * * * *
8908 AAAAAAAATATAATTCAAC-GCAAAAACAAAAAAAGGATTTTTCACGCTTTTAATATCGTTTTTT
1 AAAAAATATATAATTCAACACCAAAAA-AATTGAAGGGTTTTTCATGCTTCTAATATCGTTTTTC
* * * * * * *
8972 C-A-TTTTCTCAAATTTATTTTTAATTAAATCGAAATAAGATTCGGATACTCGTGAAAACAAA-T
65 CTATTTTTC-CGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATT
* * * * * * ** *
9034 CCTTAAATCCAGTGTGACTGAGATTTGGTTAGATGAAAATAAATATTTTGAGGAGTCTTTATGCC
129 CTTTACATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCC
* * * * *
9099 AAAAACCATGCAAAACTGAGACGAGTCCCTGAAACACGTTTTTAGTCAAAAAGC-GTGATGGTTA
194 AAAAATCATGCAAAACTGAG-CGGGGCCCTGAAACGCGTTTTTAGCCAAAAA-CTGTGATGG-TA
* ** * * * *
9163 GTACACAATTTCAGCTAAACA--CAGAACCAAA---A---AAAATTTTTTTTCTCAAATTTTTGC
256 --A-ACAATTTCGGCTAAA-ATTTTGAA--AAACTGACCCGAAATGTTTTTCCTC-AATTTTTTC
*
9220 CACAATACTCAT
314 CACAATACTCAG
* * * * *
9232 AAAAAATATAAAATTTAACACCAAAAAGATTGAAGGGTTTTTCATGCTTTTAATATTGTTTTT-C
1 AAAAAATATATAATTCAACACCAAAAAAATTGAAGGGTTTTTCATGCTTCTAATATCGTTTTTCC
* * * * *
9296 TATTTTTCCAAATTAATTTCTAAATAAATCGAAACAAGATTTAGATTCTCGAAAAAAACAAATT-
66 TATTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCG-TAAAAACAAATTC
* * * * **
9360 GTCACATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAATGAGTCTTTAC-GAG
130 TTTACATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTT-CTGCC
* * * *
9424 AAAAATCATTCAAAACTGAGCAGGGGCCCTGTAACGCATTTTTAGCCAAAAACAGTGATGAGTAA
194 AAAAATCATGCAAAACTGAGC-GGGGCCCTGAAACGCGTTTTTAGCCAAAAACTGTGATG-GTAA
* * *
9489 ACAATTTCGACTAAAATTTTGAAAAAATTGACCCGAAATTTTTTTCCTCAATTCTTTTCCACAAT
257 ACAATTTCGGCTAAAATTTTG-AAAAACTGACCCGAAATGTTTTTCCTCAATT-TTTTCCACAAT
*
9554 ACTCAT
320 ACTCAG
* * *
9560 AAAAGATATATAATTCAACGCCAAAAAAATTGTAGGGTTTTTCATGCTTCTAATATCGTTTTTCC
1 AAAAAATATATAATTCAACACCAAAAAAATTGAAGGGTTTTTCATGCTTCTAATATCGTTTTTCC
* * * * * *
9625 TTTGTTTTTTTGCCGAATTAATTTCTAATTAAATAGAAAGAAGATTCAGATGCTTGTACAATCAA
66 ----TATTTTT-CCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAA
* * * * *
9690 ATCCTTTA-ATCC-ATAGTGGCTGAGATTTGGTTAGATTAATATAGATATTGCAAAGAGTCGTTC
126 ATTCTTTACATCCAAT-GTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTC
*
9753 TGCCAAAAATCATGCGAAACTGAGTCGGGGCCCTGAAACGCGTTTTTAGCCAAAAACTGTGAT-G
190 TGCCAAAAATCATGCAAAACTGAG-CGGGGCCCTGAAACGCGTTTTTAGCCAAAAACTGTGATGG
* ** * * *
9817 TACATGATTTCGGC--------T-AAAAACTGACCCGAAGA-GTTCTTCCTCAATTTTTTTGCAA
254 TAAACAATTTCGGCTAAAATTTTGAAAAACTGACCCGAA-ATGTTTTTCCTCAA-TTTTTTCCAC
*
9872 AATAATCAG
317 AATACTCAG
* * * * * *
9881 AAAAAATATATAATTCAACGCCAAAAAGATTGACGGGGTTTTCAAGCTTCCAATATCGTTTTTTC
1 AAAAAATATATAATTCAACACCAAAAAAATTGAAGGGTTTTTCATGCTTCTAATATCG-TTTTTC
* * *
9946 CATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCGGATACTCGTAAAAACAAATT
65 C-TATTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATT
* * * *
10011 C-TTATATCCAATATGGCTGAGATTTGGTTTGATGAATATAGATATTTCCAGGAGTCTTTGC-GC
129 CTTTACATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTT-CTGC
* * ** *
10074 AAAAAATCATTG-AAAATTGAGCCGGAACTCC-GGAACGCGTTTTTAGCCAAAAACTGTGATGGT
193 CAAAAATCA-TGCAAAACTGAG-CGGGGC-CCTGAAACGCGTTTTTAGCCAAAAACTGTGATGG-
* *
10137 TAGTACAGGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGC
254 TA-AACA--ATTTCGGCTAAAATTTTG-AAAAACTGACCCGAAATGTTTTTCCTCAATTTTTT-C
*
10202 CATAATACTCAG
314 CACAATACTCAG
* * * * **
10214 AAAATATATATAATTCAACACCAAAAAAACTGAAGGATTTATCACACTTCTAATATCGTTTTTCC
1 AAAAAATATATAATTCAACACCAAAAAAATTGAAGGGTTTTTCATGCTTCTAATATCGTTTTTCC
* **
10279 -ATTTTTACCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGA-GCCTCACAAAAACAAATT
66 TATTTTT-CCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATG-CTCGTAAAAACAAATT
* * * *
10342 C-TTAAATCCAATGTGGCTGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTTTATGCC
129 CTTTACATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCC
* * * * * *
10406 AAAAACCATACAAAACTGAGACGAGGCCCTGAGACGCGTTTTAAG-CAAAAAATCGTGATG
194 AAAAATCATGCAAAACTGAG-CGGGGCCCTGAAACGCGTTTTTAGCCAAAAACT-GTGATG
10466 ATTAATAGTT
Statistics
Matches: 1007, Mismatches: 167, Indels: 113
0.78 0.13 0.09
Matches are distributed among these distances:
317 3 0.00
318 142 0.14
319 15 0.01
320 2 0.00
321 90 0.09
322 26 0.03
323 12 0.01
324 86 0.09
325 119 0.12
326 2 0.00
327 4 0.00
328 84 0.08
329 1 0.00
330 15 0.01
331 153 0.15
332 17 0.02
333 196 0.19
334 40 0.04
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (325 bp):
AAAAAATATATAATTCAACACCAAAAAAATTGAAGGGTTTTTCATGCTTCTAATATCGTTTTTCC
TATTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATTCT
TTACATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAA
AAATCATGCAAAACTGAGCGGGGCCCTGAAACGCGTTTTTAGCCAAAAACTGTGATGGTAAACAA
TTTCGGCTAAAATTTTGAAAAACTGACCCGAAATGTTTTTCCTCAATTTTTTCCACAATACTCAG
Found at i:10386 original size:649 final size:644
Alignment explanation
Indices: 8940--10465 Score: 1717
Period size: 649 Copynumber: 2.3 Consensus size: 644
8930 AAAACAAAAA
* * * *
8940 AAGGATTTTTCACGCTTTTAATATCGTTTTTTCA-TTTTCTCAAATTTATTTTTAATTAAATCGA
1 AAGGATTTTTCACGCTTCTAATATCGTTTTTCCATTTTTC-CGAATTTATTTCTAATTAAATCGA
* * ** ** * *
9004 AATAAGATTCGGATACTCGTGAAAACAAATCCTTAAATCCAGTGTGACTGAGATTTGGTTAGATG
65 AACAAGATTCAGAGCCTC-ACAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATG
* * ** *
9069 AAAATAAATATTTTGAGGAGTCTTTATGCCAAAAACCATGCAAAACTGAGACGAGTCCCTGAAAC
129 AATATAGATATTTCAAGGAGTCTTTATGCCAAAAACCATGCAAAACTGAGACGAGGCCCTGAAAC
* * *
9134 ACGTTTTTAGTCAAAAAGCGTGATGGTTAGTACACAATTTCAGCTAAACACAGAACCAAAAAAAA
194 GCGTTTTTAG-CAAAAA-C-TG-T-GAT-GTACACAATTTCAGCTAAAAACAGAACC-AAAAAAA
* * * * * * *
9199 TTTTTTTTCTCAAATTTTTGCCACAATACTCATAAAAAATATAAAATTTAACACCAAAAAGATTG
252 TGTTCTTCCTCAAATTTTTGCCAAAATAATCAGAAAAAATATAAAATTCAACACCAAAAAGATTG
* * ** *
9264 AAGGGTTTTTCATGCTTTTAATATTGTTTTTCTATTTTTCCAAATTAATTTCTAAATAAATCGAA
317 AAGGGGTTTTCAAGCTTCCAATATCGTTTTTCTATTTTTCCAAATTAATTTCTAAATAAATCGAA
* * * *
9329 ACAAGATTTAGATTCTCGAAAAAAACAAATTGTCACATCCAATGTGGCTGAGATTTGGTTCGATG
382 ACAAGATTCAGATACTCGAAAAAAACAAATTCTCACATCCAATATGGCTGAGATTTGGTTCGATG
* ** *
9394 AATATAGATATTTCAATGAGTCTTTACGAGAAAAATCATTCAAAACTGAGCAGGGGCCCTGTAAC
447 AATATAGATATTTCAAGGAGTCTTTACGAGAAAAATCATTCAAAACTGAGCAGGAACCCTGGAAC
*
9459 GCATTTTTAGCCAAAAACAGTGATGAGTAAACAATTTCGACTAAAATTTTGAAAAAATTGACCCG
512 GCATTTTTAGCCAAAAACAGTGATGAGTAAACAATTTCGACTAAAATTTTGAAAAAACTGACCCG
** * *
9524 AAATTTTTTTCCTCAATTCTTTTCCACAATACTCATAAAAGATATATAATTCAACGCCAAAAAAA
577 AAAAGTTTTTCCTCAATTCTTTTCCACAATACTCAGAAAAGATATATAATTCAACACCAAAAAAA
*
9589 TTG
642 CTG
* * * * *
9592 TAGGGTTTTTCATGCTTCTAATATCGTTTTTCCTTTGTTTTTTTGCCGAATTAATTTCTAATTAA
1 AAGGATTTTTCACGCTTCTAATATCGTTTTTCC-----ATTTTT-CCGAATTTATTTCTAATTAA
* * * * * *
9657 ATAGAAAGAAGATTCAGATGCTTGTAC-AATCAAATCCTTTAATCC-ATAGTGGCTGAGATTTGG
60 ATCGAAACAAGATTCAGA-GCCT-CACAAAACAAATCCTTAAATCCAAT-GTGGCTGAGATTTGG
* * * * * * * * *
9720 TTAGATTAATATAGATATTGCAAAGAGTCGTTCTGCCAAAAATCATGCGAAACTGAGTCGGGGCC
122 TTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAACCATGCAAAACTGAGACGAGGCC
** * * ** *
9785 CTGAAACGCGTTTTTAGCCAAAAACTGTGATGTACATGATTTCGGCTAAAAACTG-ACC-CGAAG
187 CTGAAACGCGTTTTTAG-CAAAAACTGTGATGTACACAATTTCAGCTAAAAACAGAACCAAAAAA
* * *
9848 A-GTTCTTCCTCAATTTTTTTG-CAAAATAATCAGAAAAAATATATAATTCAACGCCAAAAAGAT
251 ATGTTCTTCCTCAA-ATTTTTGCCAAAATAATCAGAAAAAATATAAAATTCAACACCAAAAAGAT
* * * *
9911 TGACGGGGTTTTCAAGCTTCCAATATCGTTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAA
315 TGAAGGGGTTTTCAAGCTTCCAATATCG-TTTTT-C-TATTTTTCCAAATTAATTTCTAAATAAA
* * * *
9976 TCGAAACAAGATTCGGATACTCG-TAAAAACAAATTCTTATATCCAATATGGCTGAGATTTGGTT
377 TCGAAACAAGATTCAGATACTCGAAAAAAACAAATTCTCACATCCAATATGGCTGAGATTTGGTT
* * * * * *
10040 TGATGAATATAGATATTTCCAGGAGTCTTTGCGCA-AAAAATCATTGAAAATTGAGCCGGAACTC
442 CGATGAATATAGATATTTCAAGGAGTCTTTACG-AGAAAAATCATTCAAAACTGAGCAGGAAC-C
* * * * *
10104 C-GGAACGCGTTTTTAGCCAAAAACTGTGATG-GTTAGTACAGGATTTCGGCTAAAATTTTGCAA
505 CTGGAACGCATTTTTAGCCAAAAACAGTGATGAG-TA-AACA--ATTTCGACTAAAATTTTGAAA
* *
10167 AAACTGACCCGAAAAGTTTTTCCTCAATT-TTTTGCCATAATACTCAGAAAATATATATAATTCA
566 AAACTGACCCGAAAAGTTTTTCCTCAATTCTTTT-CCACAATACTCAGAAAAGATATATAATTCA
10231 ACACCAAAAAAACTG
630 ACACCAAAAAAACTG
* *
10246 AAGGATTTATCACACTTCTAATATCGTTTTTCCATTTTTACCGAATTTATTTCTAATTAAATCGA
1 AAGGATTTTTCACGCTTCTAATATCGTTTTTCCATTTTT-CCGAATTTATTTCTAATTAAATCGA
* *
10311 AACAAGATTCAGAGCCTCACAAAAACAAATTCTTAAATCCAATGTGGCTGATATTTGGTTAGATG
65 AACAAGATTCAGAGCCTCAC-AAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATG
* * *
10376 AATATAGATATTTCAAGGAGTTTTTATGCCAAAAACCATACAAAACTGAGACGAGGCCCTGAGAC
129 AATATAGATATTTCAAGGAGTCTTTATGCCAAAAACCATGCAAAACTGAGACGAGGCCCTGAAAC
* *
10441 GCGTTTTAAGCAAAAAATCGTGATG
194 GCGTTTTTAGCAAAAACT-GTGATG
10466 ATTAATAGTT
Statistics
Matches: 722, Mismatches: 127, Indels: 53
0.80 0.14 0.06
Matches are distributed among these distances:
647 2 0.00
648 10 0.01
649 211 0.29
650 17 0.02
651 117 0.16
652 82 0.11
653 23 0.03
654 115 0.16
655 1 0.00
656 2 0.00
657 2 0.00
658 138 0.19
659 2 0.00
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (644 bp):
AAGGATTTTTCACGCTTCTAATATCGTTTTTCCATTTTTCCGAATTTATTTCTAATTAAATCGAA
ACAAGATTCAGAGCCTCACAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAA
TATAGATATTTCAAGGAGTCTTTATGCCAAAAACCATGCAAAACTGAGACGAGGCCCTGAAACGC
GTTTTTAGCAAAAACTGTGATGTACACAATTTCAGCTAAAAACAGAACCAAAAAAATGTTCTTCC
TCAAATTTTTGCCAAAATAATCAGAAAAAATATAAAATTCAACACCAAAAAGATTGAAGGGGTTT
TCAAGCTTCCAATATCGTTTTTCTATTTTTCCAAATTAATTTCTAAATAAATCGAAACAAGATTC
AGATACTCGAAAAAAACAAATTCTCACATCCAATATGGCTGAGATTTGGTTCGATGAATATAGAT
ATTTCAAGGAGTCTTTACGAGAAAAATCATTCAAAACTGAGCAGGAACCCTGGAACGCATTTTTA
GCCAAAAACAGTGATGAGTAAACAATTTCGACTAAAATTTTGAAAAAACTGACCCGAAAAGTTTT
TCCTCAATTCTTTTCCACAATACTCAGAAAAGATATATAATTCAACACCAAAAAAACTG
Found at i:10445 original size:331 final size:333
Alignment explanation
Indices: 9832--10465 Score: 834
Period size: 331 Copynumber: 1.9 Consensus size: 333
9822 GATTTCGGCT
*
9832 AAAAACTGACCCGAAGAGTTCTTCCTCAATTTTTTTGCAAAATAATCAGAAAAAATATATAATTC
1 AAAAACTGACCCGAAAAGTTCTTCCTCAATTTTTTTGCAAAATAATCAGAAAAAATATATAATTC
* * * * * *
9897 AACGCCAAAAAGATTGACGGGGTTTTCAAGCTTCCAATATCGTTTTTTCCATTTTTTTCCGAATT
66 AACACCAAAAAAACTGACAGGATTTTCAAGCTTCCAATATCGTTTTTTCCATTTTTTACCGAATT
* * ** *
9962 AATTTCTAATTAAATCGAAACAAGATTCGGATACTCGTAAAAACAAATTCTTATATCCAATATGG
131 AATTTCTAATTAAATCGAAACAAGATTCAGAGACTCACAAAAACAAATTCTTAAATCCAATATGG
* * * * ** *
10027 CTGAGATTTGGTTTGATGAATATAGATATTTCCAGGAGTCTTTGCGCAAAAAATCATTGAAAATT
196 CTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTACGCAAAAAACCATACAAAACT
* * *
10092 GAGCCGGAACTCCGGAACGCGTTTTTAGCCAAAAA-CTGTGATGGTTAGTACAGGATTTCGGCTA
261 GAGACGGAACTCCGGAACGCGTTTTAAGCAAAAAATC-GTGATGGTTAGTACAGGATTTCGGCTA
10156 AAATTTTGC
325 AAATTTTGC
* * * *
10165 AAAAACTGACCCGAAAAGTTTTTCCTCAA-TTTTTTGCCATAATACTCAGAAAATATATATAATT
1 AAAAACTGACCCGAAAAGTTCTTCCTCAATTTTTTTG-CAAAATAATCAGAAAAAATATATAATT
*
10229 CAACACCAAAAAAACTGA-AGGATTTATCACA-CTTCTAATATCG-TTTTTCCA-TTTTTACCGA
65 CAACACCAAAAAAACTGACAGGATTT-TCA-AGCTTCCAATATCGTTTTTTCCATTTTTTACCGA
* * *
10290 ATTTATTTCTAATTAAATCGAAACAAGATTCAGAGCCTCACAAAAACAAATTCTTAAATCCAATG
128 ATTAATTTCTAATTAAATCGAAACAAGATTCAGAGACTCACAAAAACAAATTCTTAAATCCAATA
* * * *
10355 TGGCTGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTTTATGCCAAAAACCATACAAA
193 TGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTACGCAAAAAACCATACAAA
* *
10420 ACTGAGAC-GAGGC-CCTGAGACGCGTTTTAAGCAAAAAATCGTGATG
258 ACTGAGACGGA-ACTCCGGA-ACGCGTTTTAAGCAAAAAATCGTGATG
10466 ATTAATAGTT
Statistics
Matches: 259, Mismatches: 36, Indels: 14
0.84 0.12 0.05
Matches are distributed among these distances:
330 6 0.02
331 151 0.58
332 21 0.08
333 80 0.31
334 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (333 bp):
AAAAACTGACCCGAAAAGTTCTTCCTCAATTTTTTTGCAAAATAATCAGAAAAAATATATAATTC
AACACCAAAAAAACTGACAGGATTTTCAAGCTTCCAATATCGTTTTTTCCATTTTTTACCGAATT
AATTTCTAATTAAATCGAAACAAGATTCAGAGACTCACAAAAACAAATTCTTAAATCCAATATGG
CTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTACGCAAAAAACCATACAAAACT
GAGACGGAACTCCGGAACGCGTTTTAAGCAAAAAATCGTGATGGTTAGTACAGGATTTCGGCTAA
AATTTTGC
Found at i:12947 original size:321 final size:322
Alignment explanation
Indices: 12309--16860 Score: 5570
Period size: 322 Copynumber: 14.1 Consensus size: 322
12299 TCAATAGTGC
* * * * *
12309 ACACGATTTCGGCTAAAAACTGACCTGAAAAATTTTTCCTCAAATTTTTTATT-ACAATACTCAG
1 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTC-AATTTCTTCTTCACAATACTCAG
* * * *
12373 AAAAAATATATAATTCAACGCTAAAAAAATTAAAGGGGTTTTCACGCTTCTAATATCATTTTTCA
65 AAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTC-
* *** * * *
12438 TATTTTTTTTGAATTAAATTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAAAATAAATCC
129 CATTTTTACCGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAAAACAAATCC
*
12503 TTAAATTCAATGTGGCTGAGATTTGATTAGATAAATAAAGATATTTCAAGGAGTCTTTATGCCAA
194 TTAAATTCAATGTGGCTGAGATTTGATTAGATGAATAAAGATATTTCAAGGAGTCTTTATGCCAA
* * * *
12568 ACACCATGCAAAACAGAGACAAGGCCCCGAAAGGCGTTTTTAGCCAAAAACCGTGATAGTTAGT
259 AAACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGT
* ** * *
12632 ACATGATTTCAACTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTT-GTCACAATACACAGA
1 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGA
* *
12696 AAAAATATATAATTTAACACCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA
66 AAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA
* *
12761 TTTTTACTGAATTTATTTCTAATTAAATCGAAATAAGATTCATATGCACGTAAAAACAAATCCTT
131 TTTTTACCGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAAAACAAATCCTT
* * * *
12826 AAATTCAATGTGGCTGAGATTCGATTAGATGGATAAAGATATTTTAAGGAATCTTTATGCCAAAA
196 AAATTCAATGTGGCTGAGATTTGATTAGATGAATAAAGATATTTCAAGGAGTCTTTATGCCAAAA
* * * *
12891 ACCATGCAAAACTGAGACGAAGCCCTGAAACGCGTTTTTAACCAAAAACTGTGATAGTTAGT
261 ACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGT
* * ** *
12953 ACATGACTTCGATTAAAAATTGACCCGAAAAGTTTTTCCTCAA-TTCTTTTTCACAATACTCAG-
1 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGA
* *
13016 AAAAATATCTAATTCAATGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA
66 AAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA
* * * *
13081 TTTTTACCGAATTTATTTCTAATTAAATCGAAACAAAAATTCAGATGCTCGCGAAAAA-AAATCC
131 TTTTTACCGAATTTATTTCTAATTAAATCGAAA-TAAGATTCAGATGCACG-TAAAAACAAATCC
* * * *
13145 TTAAATTCAATATGGCTGAGATTTGGTTAGATGAATATAA-ATATTTCAAGAAGTCTTTTTGCCA
194 TTAAATTCAATGTGGCTGAGATTTGATTAGATGAATA-AAGATATTTCAAGGAGTCTTTATGCCA
** * * * *
13209 AAAACCATAAAAAACTGAGACGAGGCCTCGAAACGTGTTTTTTGCTAAAAACCCGTGATTA-TTA
258 AAAACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAA-CCGTGA-TAGTTA
13273 GT
321 GT
* * * * * * * * **
13275 ATAAGATTTCGGCTAAAAACTGACCCGGAAAATTTTTTTCTCAATTTGTT-TGCAAAATTTTCAG
1 ACACGATTTCGGCTAAAAATTGACCC-GAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAG
* * *
13339 -AAAAATATATAATTCAACGCCAAAAAGATTGACGGG-CTTTCACGCTT-TCAATATCGTTTTTC
65 AAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCT-AATATCGTTTTTC
** * * * * * * ** * *
13401 CAATTTTTTTTTTCGAATTAATTTCCAATTAAATCAAAACAATATTTAGATGCTTGGAAAAATAA
129 C-A---TTTTTACCGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAAAACAA
* * * * * * *
13466 ATCCTTATATCCAATGTAGCTGAGATTTGGTTCA-ATGAATATAA-ATATTTGAAGGAGTATTTG
190 ATCCTTAAATTCAATGTGGCTGAGATTTGATT-AGATGAATA-AAGATATTTCAAGGAGTCTTTA
* * * * * * * * * * *
13529 CGCCCAAAATCTTGCAAAATTGAGCCG-GGACTCCGGAACGCGTTTTCAGTCAAAAACCGTGATG
253 TGCCAAAAACCATGCAAAACTGAGACGAGG-CCCCGAAACGCGTTTTTAGCCAAAAACCGTGATA
13593 GTTAGT
317 GTTAGT
* * * *
13599 ACACGATTTCGACTAAAATTTCGCAAAAACTGACCCGAAAAGTTTTTTCTCAATTT-TT-TGCCA
1 ACACGATTTCGGC-------T---AAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCT-TCA
* * * *
13662 CAAAACTCTG-AAAAATATATAATTCAACGCCAAAAAAAATTGAAGGATTTTTCACGCTTCTAAA
55 CAATACTCAGAAAAAATATATAATTCAACGCC-AAAAAAATTGAAGGGTTTTTCACGCTTCTAAT
* * *** * *
13726 ATCATTTTTCAAATTTTTTTAGAATTAAATTCTAATTAAATCGAAATAAGATTCAGATGCACGTA
119 ATCGTTTTTC-CATTTTTACCGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTA
** *
13791 AAAACAAATCCTTAAATTCAACATGGCTGAGATTTGATTAGATGAATCAAGATATTTCAAGGAGT
183 AAAACAAATCCTTAAATTCAATGTGGCTGAGATTTGATTAGATGAATAAAGATATTTCAAGGAGT
* * * *
13856 CTTTATGCCAAAAACCATGCAAAATTGAGACGAAGCCCCGAAACGCGTTTATAGCCAAAAACCAT
248 CTTTATGCCAAAAACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGT
13921 GATAGTTAGT
313 GATAGTTAGT
* ** * * *
13931 ACATGATTTCAACTAAAAATTGACACGATAAGTTTTTCCTCAATTT-TT-TGTCACAAAACTCAG
1 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCT-TCACAATACTCAG
* * * *
13994 AAAAAATATATAATTCAACACCAAAAAAATGGAAGGGTTTTTAACGCTTCTAATATCATTTTTCC
65 AAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCC
*
14059 ATTTTTACCGAATTTATTTCTAATTAAATCCAAATAAGATTCAGATGCACGTAAAAACAAATCCT
130 ATTTTTACCGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAAAACAAATCCT
* * * *
14124 TAGATTCAATGTGGCTGAGATTTGATTAGATAAATAAAGATATATT-AGGGAATCTTTATGCCAA
195 TAAATTCAATGTGGCTGAGATTTGATTAGATGAATAAAGATAT-TTCAAGGAGTCTTTATGCCAA
* * * *
14188 AAACCAGGCAAAACCGAGACGAGGCCCCGAAACGCGTTTTTAG-C-AAAACCATGATACTTAGT
259 AAACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGT
* * *
14250 ACACGATTTCGGCTAAAAATTGACCAGAAAATTTTTTCCTCAATTTCTTCTTCACAATACTAAGA
1 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGA
* *
14315 AAAAATATATAATTCAACGCCAAAAAATTTGAA-GGTTTTTCACGATTCTAATATCGTTTTTCCA
66 AAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA
* * * **
14379 ATTTTACCGAATTTATTTCTAATTAAATGGAAATAAATATTCAGATGCACGTAAAAAC-AATTTT
131 TTTTTACCGAATTTATTTCTAATTAAATCGAAAT-AAGATTCAGATGCACGTAAAAACAAATCCT
* * *
14443 TAAATTCAATGTGGCTGAGATTTGGTTCA-ATGAATATAA-ATATTTGAAGGAGT-ATTATGGCC
195 TAAATTCAATGTGGCTGAGATTTGATT-AGATGAATA-AAGATATTTCAAGGAGTCTTTAT-GCC
* * * * * * * * * *
14505 CAAAATCTTGCAAAATTGAGCCG-GGACTCCGGAACGCGTTTTTAG-TAAAATATCGTGATGGTT
257 AAAAACCATGCAAAACTGAGACGAGG-CCCCGAAACGCGTTTTTAGCCAAAA-ACCGTGATAGTT
* *
14568 CGA
320 AGT
* * * * * **
14571 ACACGATTTCGGCAAAACTTTTGCAAAAACTGAGCCGAAAAATTTTTACTAAATTT-TTCACCAC
1 ACACGATTTCGG-----C---T--AAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCAC
* * * *
14635 AATACTCTG-AAAAATATATAATTTAACG-AAAAAAAATTGAAGGATTTTTCACGCTTCTAATAT
56 AATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATAT
* * * *
14698 CGTTTTT-CATATTTTTCTCGAATTAAATTCTAATTAAATCGAAATAAGATTCAGATGCATGTAA
121 CGTTTTTCCAT-TTTTAC-CGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTAA
* * * * *
14762 AAGCATATCCTTAAATTAAATGTGGCTGAGATTTGATTAGATGAATAAAGCTATTTCGAGGAGTC
184 AAACAAATCCTTAAATTCAATGTGGCTGAGATTTGATTAGATGAATAAAGATATTTCAAGGAGTC
*
14827 TTTATGCCAAAAACCATGTAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTG
249 TTTATGCCAAAAACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTG
14892 ATAGTTAGT
314 ATAGTTAGT
*
14901 ACAAGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGA
1 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGA
* * *
14966 AAAATATATATAATTCAACGCCAAAAAGATTGAA-GGTTTATCACGATTCTAATATCGTTTTTCC
66 AAAA-ATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCC
* * * *
15030 AATTTTACCTAATTTATTTCTAATTAAATCGAAATAAATATTCAGATGCACGTAAAAACAAATTC
130 ATTTTTACCGAATTTATTTCTAATTAAATCGAAAT-AAGATTCAGATGCACGTAAAAACAAATCC
* * * *
15095 TTAAATTCAATGTGGCAGAGAATTT-ATTAGATGAATAAAGATATTTTAGGGAATCTTTATGCCA
194 TTAAATTCAATGTGGCTGAG-ATTTGATTAGATGAATAAAGATATTTCAAGGAGTCTTTATGCCA
15159 AAAACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGT
258 AAAACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGT
*
15224 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCTTCAATTTCTTCTTCACAATACTCAGA
1 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGA
*
15289 AAAAATATATAATTCAACGCCAAAAAAATTGAA-GGTTTTTCACGATTCTAATATCGTTTTTCCA
66 AAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA
* *
15353 ATTTTACCGAATTTATTTCTAATTAAATCGAAATAAAGATTCAGATGCACGTAAAAACAAATTCT
131 TTTTTACCGAATTTATTTCTAATTAAATCGAAAT-AAGATTCAGATGCACGTAAAAACAAATCCT
* * * * *
15418 TAAATTCAATGTGGCAGAGATTTGGTTAGATGAATATAGATATTTCAGGGAATCTTTATGCCAAA
195 TAAATTCAATGTGGCTGAGATTTGATTAGATGAATAAAGATATTTCAAGGAGTCTTTATGCCAAA
*
15483 AACCATGCAAAACTGAGACGAGGCCCCAAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGT
260 AACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGT
*
15546 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTAAGA
1 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGA
15611 AAAAATATAATAATT-AACGCCAAAAAAATTGAA-GGTTTTTCACGCTTCTAATATCGTTTTTCC
66 AAAAATAT-ATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCC
* *
15674 ATTTTTACCGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAAAGCATATCCT
130 ATTTTTACCGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAAAACAAATCCT
* * * ** *
15739 TAAATTCAATGTGGCTGAGATTTGGTTCA-ATGAATATAA-ATATTTGAAGGAGTATTTGCGCCC
195 TAAATTCAATGTGGCTGAGATTTGATT-AGATGAATA-AAGATATTTCAAGGAGTCTTTATGCCA
* * * * * * * * * * * *
15802 AAAATCTTGCAAAATTGAGCCG-GGACTCCGGAACGCGTTTTCAG-TATAATATCGTGATGGTTC
258 AAAACCATGCAAAACTGAGACGAGG-CCCCGAAACGCGTTTTTAGCCA-AAAACCGTGATAGTTA
15865 GT
321 GT
* * **
15867 ACACGATTTCGGCAAAAATTTTGCAAAAACTGACCCGAAAAATTTTTCCTCAATTT-TTCGCCAC
1 ACACGATTTCGGC--------T--AAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCAC
* * *
15931 AATACTCTG-AAAAATATATAATTTAACGCCAAAAAAATTGAAGGATTTTTCACGCTTCTAATAT
56 AATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATAT
* ** * *
15995 CGTTTTTCATATTTTTTTCGAATTAAATTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAA
121 CGTTTTTC-CATTTTTACCGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAA
* * *
16060 AGCATATCCTTAAATTCAATGTGGCTGAGATTTGATTAGATGAATAAAGATATTTCGAGGAGTCT
185 AACAAATCCTTAAATTCAATGTGGCTGAGATTTGATTAGATGAATAAAGATATTTCAAGGAGTCT
16125 TTATGCCAAAAACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGA
250 TTATGCCAAAAACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGA
16190 TAGTTAGT
315 TAGTTAGT
16198 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGA
1 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGA
* *
16263 AAAAATATATAATTCAACGCCAAAAAATTTGAA-GGTTTTTCACGATTCTAATATCGTTTTTCCA
66 AAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA
* *
16327 ATTTTACCGAATTTATTTCTAATTAAATCGAAATAAATATTCAGATGCACGTAAAAACAAATCCT
131 TTTTTACCGAATTTATTTCTAATTAAATCGAAAT-AAGATTCAGATGCACGTAAAAACAAATCCT
* * * *
16392 TAAATCCAATATGGCTGAGATTTGATTAGACGAATATAGATATTTCAAGGAGTCTTTATGCCAAA
195 TAAATTCAATGTGGCTGAGATTTGATTAGATGAATAAAGATATTTCAAGGAGTCTTTATGCCAAA
16457 AACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGT
260 AACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGT
16520 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGA
1 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGA
* *
16585 AAAAATATATAATTCAACGCCAAAATAATTGAA-GGATTTTCACGCTTCTAATATCGTTTTTCCA
66 AAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA
* * * *
16649 TTTTTACCGAATTTATTTCTAATCAAATCGAAATAAGATTCAGATGCACGTAAAAGCATATCCTC
131 TTTTTACCGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAAAACAAATCCTT
* * * ** *
16714 AAATTCAATGTGGCTGAGATTTGGTTCA-ATGAATATAA-ATATTTGAAGGAGTATTTGCGCCCA
196 AAATTCAATGTGGCTGAGATTTGATT-AGATGAATA-AAGATATTTCAAGGAGTCTTTATGCCAA
* * * * * * * * ** * *
16777 AAATCTTGCAAAATTGAGCCG-GGACTCCGAAACGCGTCTTCAG-TAAAATATGGTGATGGTTCG
259 AAACCATGCAAAACTGAGACGAGG-CCCCGAAACGCGTTTTTAGCCAAAA-ACCGTGATAGTTAG
16840 T
322 T
16841 ACACGATTTCGGC-AAAAATT
1 ACACGATTTCGGCTAAAAATT
16861 TAGCAAAAAC
Statistics
Matches: 3675, Mismatches: 450, Indels: 211
0.85 0.10 0.05
Matches are distributed among these distances:
318 8 0.00
319 195 0.05
320 214 0.06
321 863 0.23
322 992 0.27
323 405 0.11
324 50 0.01
325 107 0.03
326 30 0.01
328 19 0.01
329 100 0.03
330 186 0.05
331 243 0.07
332 168 0.05
333 48 0.01
334 24 0.01
335 22 0.01
336 1 0.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (322 bp):
ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGA
AAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA
TTTTTACCGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAAAACAAATCCTT
AAATTCAATGTGGCTGAGATTTGATTAGATGAATAAAGATATTTCAAGGAGTCTTTATGCCAAAA
ACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGT
Found at i:15992 original size:974 final size:963
Alignment explanation
Indices: 12309--16935 Score: 5637
Period size: 974 Copynumber: 4.8 Consensus size: 963
12299 TCAATAGTGC
* * * * *
12309 ACACGATTTCGGCTAAAAACTGACCTGAAAAATTTTTCCTCAAATTTTTTATT-ACAATACTCAG
1 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTC-AATTTCTTCTTCACAATACTCAG
* * * * *
12373 AAAAAATATATAATTCAACGCTAAAAAAATTAAAGGGGTTTTCACGCTTCTAATATCATTTTT-C
65 AAAAAATATATAATTCAACGCCAAAAAAATTGAA-GGTTTTTCACGATTCTAATATCGTTTTTCC
*** * * * *
12437 ATATTTTTTTTGAATTAAATTCTAATTAAATCGAAAT-AAGATTCAGATGCACGTAAAAATAAAT
129 A-A-TTTTACCGAATTTATTTCTAATTAAATCGAAATAAATATTCAGATGCACGTAAAAACAAAT
* * *
12501 CCTTAAATTCAATGTGGCTGAGATTTGATTAGATAAATAAAGATATTTCAAGGAGTCTTTATGCC
192 CCTTAAATTCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCC
* * * *
12566 AAACACCATGCAAAACAGAGACAAGGCCCCGAAAGGCGTTTTTAGCCAAAAACCGTGATAGTTAG
257 AAAAACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAG
* ** * *
12631 TACATGATTTCAACTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTT-GTCACAATACACAG
322 TACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAG
*
12695 AAAAAATATATAATTTAACACCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCC
387 AAAAAATATATAA-TTAACGCCAAAAAAATTGAA-GGTTTTTCACGCTTCTAATATCGTTTTTCC
* * * *
12760 ATTTTTACTGAATTTATTTCTAATTAAATCGAAATAAGATTCATATGCACGTAAAAACAAATCCT
450 ATTTTTACCGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAAAGCATATCCT
* * * *
12825 TAAATTCAATGTGGCTGAGATTCGATTAGATGGATAAAGATATTTTAAGGAATCTTTATGCCAAA
515 TAAATTCAATGTGGCTGAGATTTGATTAGATGAATAAA-ATATTTGAAGGAGTCTTTATGCCAAA
* * * * * *
12890 AACCATGCAAAACTGAGAC-GAAGCCCTGAAACGCGTTTTTAACCAAAAACTGTGATAGTTAGTA
579 AACCATGCAAAATTGAGACGGGA-CCCCGAAACGCG-TTTTCAGCAAAAACCGTGATAGTTAGTA
* * *
12954 CATGACTTC-G--ATTAAAAATTGACCCGAAAAGTTTTTCCTCAATTCTTT-TTCACAATACTCA
642 CACGATTTCGGCAATTAAAAATTGACCCGAAAAGTTTTTCCTCAATT-TTTCGTCACAATACTCA
* *
13015 GAAAAATATCTAATTCAATGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCC
706 GAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCC
* * * * *
13080 ATTTTTACCGAATTTATTTCTAATTAAATCGAAACAAAAATTCAGATGCTCGCGAAAAA-AAATC
771 AATTTTACCGAATTTATTTCTAATTAAATCGAAA-TAAGATTCAGATGCACG-TAAAAACAAATC
* * * * *
13144 CTTAAATTCAATATGGCTGAGATTTGGTTAGATGAATATAA-ATATTTCA-AGAAGTCTTTTTGC
834 CTTAAATTCAATGTGGCTGAGATTTGATTAGATGAATA-AAGATATTTTAGGGAA-TCTTTATGC
** * * * *
13207 CAAAAACCATAAAAAACTGAGACGAGGCCTCGAAACGTGTTTTTTGCTAAAAACCCGTGATTA-T
897 CAAAAACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAA-CCGTGA-TAGT
13271 TAGT
960 TAGT
* * * * * * * * **
13275 ATAAGATTTCGGCTAAAAACTGACCCGGAAAATTTTTTTCTCAATTTGTT-TGCAAAATTTTCAG
1 ACACGATTTCGGCTAAAAATTGACCC-GAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAG
* * ** *
13339 -AAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTCACGCTT-TCAATATCGTTTTTCC
65 AAAAAATATATAATTCAACGCCAAAAAAATTGAAGGTTTTTCACGATTCT-AATATCGTTTTTCC
** * * * ** * *
13402 AATTTTTTTTTTCGAATTAATTTCCAATTAAATC-AAA-ACAATATTTAGATGCTTGGAAAAATA
129 AA----TTTTACCGAATTTATTTCTAATTAAATCGAAATA-AATATTCAGATGCACGTAAAAACA
* * * * * * *
13465 AATCCTTATATCCAATGTAGCTGAGATTTGGTTCA-ATGAATATAAATATTTGAAGGAGTATTTG
189 AATCCTTAAATTCAATGTGGCTGAGATTTGGTT-AGATGAATATAGATATTTCAAGGAGTCTTTA
* * * * * * * * * * *
13529 CGCCCAAAATCTTGCAAAATTGAGCCG-GGACTCCGGAACGCGTTTTCAGTCAAAAACCGTGATG
253 TGCCAAAAACCATGCAAAACTGAGACGAGG-CCCCGAAACGCGTTTTTAGCCAAAAACCGTGATA
* * *
13593 GTTAGTACACGATTTCGACTAAAATTTCGCAAAAACTGACCCGAAAAGTTTTTTCTCAATTT-TT
317 GTTAGTACACGATTTCGGC-------T---AAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTT
* * *
13657 -TGCCACAAAACTCTG-AAAAATATATAATTCAACGCCAAAAAAAATTGAAGGATTTTTCACGCT
372 CT-TCACAATACTCAGAAAAAATATATAATT-AACGCC-AAAAAAATTGAAGG-TTTTTCACGCT
* * * *** * *
13720 TCTAAAATCATTTTTCAAATTTTTTTAGAATTAAATTCTAATTAAATCGAAATAAGATTCAGATG
433 TCTAATATCGTTTTTC-CATTTTTACCGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATG
* * ** * *
13785 CACGTAAAAACAAATCCTTAAATTCAACATGGCTGAGATTTGATTAGATGAATCAAGATATTTCA
497 CACGTAAAAGCATATCCTTAAATTCAATGTGGCTGAGATTTGATTAGATGAAT-AAAATATTTGA
*
13850 AGGAGTCTTTATGCCAAAAACCATGCAAAATTGAGAC-GAAGCCCCGAAACGCGTTTAT-AGCCA
561 AGGAGTCTTTATGCCAAAAACCATGCAAAATTGAGACGGGA-CCCCGAAACGCGTTT-TCAG-CA
* * * * *
13913 AAAACCATGATAGTTAGTACATGATTT---CAACTAAAAATTGACACGATAAGTTTTTCCTCAAT
623 AAAACCGTGATAGTTAGTACACGATTTCGGCAATTAAAAATTGACCCGAAAAGTTTTTCCTCAAT
* * * * *
13975 TTTTTGTCACAAAACTCAGAAAAAATATATAATTCAACACCAAAAAAATGGAAGGGTTTTTAACG
688 TTTTCGTCACAATACTCAG-AAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACG
* * *
14040 CTTCTAATATCATTTTTCCATTTTTACCGAATTTATTTCTAATTAAATCCAAATAAGATTCAGAT
752 CTTCTAATATCGTTTTTCCAATTTTACCGAATTTATTTCTAATTAAATCGAAATAAGATTCAGAT
* * *
14105 GCACGTAAAAACAAATCCTTAGATTCAATGTGGCTGAGATTTGATTAGATAAATAAAGATATATT
817 GCACGTAAAAACAAATCCTTAAATTCAATGTGGCTGAGATTTGATTAGATGAATAAAGATATTTT
* *
14170 AGGGAATCTTTATGCCAAAAACCAGGCAAAACCGAGACGAGGCCCCGAAACGCGTTTTTAG-C-A
882 AGGGAATCTTTATGCCAAAAACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAA
* *
14233 AAACCATGATACTTAGT
947 AAACCGTGATAGTTAGT
* * *
14250 ACACGATTTCGGCTAAAAATTGACCAGAAAATTTTTTCCTCAATTTCTTCTTCACAATACTAAGA
1 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGA
*
14315 AAAAATATATAATTCAACGCCAAAAAATTTGAAGGTTTTTCACGATTCTAATATCGTTTTTCCAA
66 AAAAATATATAATTCAACGCCAAAAAAATTGAAGGTTTTTCACGATTCTAATATCGTTTTTCCAA
* **
14380 TTTTACCGAATTTATTTCTAATTAAATGGAAATAAATATTCAGATGCACGTAAAAAC-AATTTTT
131 TTTTACCGAATTTATTTCTAATTAAATCGAAATAAATATTCAGATGCACGTAAAAACAAATCCTT
* * * *
14444 AAATTCAATGTGGCTGAGATTTGGTTCA-ATGAATATAAATATTTGAAGGAGT-ATTATGGCCCA
196 AAATTCAATGTGGCTGAGATTTGGTT-AGATGAATATAGATATTTCAAGGAGTCTTTAT-GCCAA
* * * * * * * * * *
14507 AAATCTTGCAAAATTGAGCCG-GGACTCCGGAACGCGTTTTTAG-TAAAATATCGTGATGGTTCG
259 AAACCATGCAAAACTGAGACGAGG-CCCCGAAACGCGTTTTTAGCCAAAA-ACCGTGATAGTTAG
* * * * * * **
14570 AACACGATTTCGGCAAAACTTTTGCAAAAACTGAGCCGAAAAATTTTTACTAAATTT-TTCACCA
322 TACACGATTTCGG-----C---T--AAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCA
* *
14634 CAATACTCTG-AAAAATATATAATTTAACG-AAAAAAAATTGAAGGATTTTTCACGCTTCTAATA
377 CAATACTCAGAAAAAATATATAA-TTAACGCCAAAAAAATTGAAGG-TTTTTCACGCTTCTAATA
* * * *
14697 TCGTTTTT-CATATTTTTCTCGAATTAAATTCTAATTAAATCGAAATAAGATTCAGATGCATGTA
440 TCGTTTTTCCAT-TTTTAC-CGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTA
* *
14761 AAAGCATATCCTTAAATTAAATGTGGCTGAGATTTGATTAGATGAATAAAGCTATTTCG-AGGAG
503 AAAGCATATCCTTAAATTCAATGTGGCTGAGATTTGATTAGATGAATAAA-ATATTT-GAAGGAG
* * *
14825 TCTTTATGCCAAAAACCATGTAAAACTGAGACGAGG-CCCCGAAACGCGTTTTTAGCCAAAAACC
566 TCTTTATGCCAAAAACCATGCAAAATTGAGACG-GGACCCCGAAACGCGTTTTCAG-CAAAAACC
*
14889 GTGATAGTTAGTACAAGATTTCGGC---TAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTC
629 GTGATAGTTAGTACACGATTTCGGCAATTAAAAATTGACCCGAAAAGTTTTTCCTCAATTT-TTC
* * * *
14951 TTCACAATACTCAGAAAAATATATATAATTCAACGCCAAAAAGATTGAA-GGTTTATCACGATTC
693 GTCACAATACTCAG-AAAA-ATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTC
* *
15015 TAATATCGTTTTTCCAATTTTACCTAATTTATTTCTAATTAAATCGAAATAAATATTCAGATGCA
756 TAATATCGTTTTTCCAATTTTACCGAATTTATTTCTAATTAAATCGAAAT-AAGATTCAGATGCA
* *
15080 CGTAAAAACAAATTCTTAAATTCAATGTGGCAGAGAATTT-ATTAGATGAATAAAGATATTTTAG
820 CGTAAAAACAAATCCTTAAATTCAATGTGGCTGAG-ATTTGATTAGATGAATAAAGATATTTTAG
15144 GGAATCTTTATGCCAAAAACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAA
884 GGAATCTTTATGCCAAAAACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAA
15209 ACCGTGATAGTTAGT
949 ACCGTGATAGTTAGT
*
15224 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCTTCAATTTCTTCTTCACAATACTCAGA
1 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGA
15289 AAAAATATATAATTCAACGCCAAAAAAATTGAAGGTTTTTCACGATTCTAATATCGTTTTTCCAA
66 AAAAATATATAATTCAACGCCAAAAAAATTGAAGGTTTTTCACGATTCTAATATCGTTTTTCCAA
* *
15354 TTTTACCGAATTTATTTCTAATTAAATCGAAATAAAGATTCAGATGCACGTAAAAACAAATTCTT
131 TTTTACCGAATTTATTTCTAATTAAATCGAAATAAATATTCAGATGCACGTAAAAACAAATCCTT
* * *
15419 AAATTCAATGTGGCAGAGATTTGGTTAGATGAATATAGATATTTCAGGGAATCTTTATGCCAAAA
196 AAATTCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAA
*
15484 ACCATGCAAAACTGAGACGAGGCCCCAAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACA
261 ACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACA
*
15549 CGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTAAGAAAA
326 CGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGAAAA
15614 AATATAATAATTAACGCCAAAAAAATTGAAGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTT
391 AATAT-ATAATTAACGCCAAAAAAATTGAAGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTT
15679 TACCGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAAAGCATATCCTTAAAT
455 TACCGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAAAGCATATCCTTAAAT
* * ** * *
15744 TCAATGTGGCTGAGATTTGGTTCA-ATGAATATAAATATTTGAAGGAGTATTTGCGCCCAAAATC
520 TCAATGTGGCTGAGATTTGATT-AGATGAATA-AAATATTTGAAGGAGTCTTTATGCCAAAAACC
* * * * * * * * *
15808 TTGCAAAATTGAGCCGGGACTCCGGAACGCGTTTTCAGTATAATATCGTGATGGTTCGTACACGA
583 ATGCAAAATTGAGACGGGACCCCGAAACGCGTTTTCAGCA-AAAACCGTGATAGTTAGTACACGA
* * *
15873 TTTCGGCAAAAATTTTGCAAAAACTGACCCGAAAAATTTTTCCTCAATTTTTCGCCACAATACTC
647 TTTCGGC---AA--TT--AAAAATTGACCCGAAAAGTTTTTCCTCAATTTTTCGTCACAATACTC
* * *
15938 TGAAAAATATATAATTTAACGCCAAAAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTT-
705 AGAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTC
** * * * *
16002 CATATTTTTTTCGAATTAAATTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAAAGCATAT
770 CA-A-TTTTACCGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAAAACAAAT
* *
16067 CCTTAAATTCAATGTGGCTGAGATTTGATTAGATGAATAAAGATA-TTTCGAGGAGTCTTTATGC
833 CCTTAAATTCAATGTGGCTGAGATTTGATTAGATGAATAAAGATATTTTAG-GGAATCTTTATGC
16131 CAAAAACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTA
897 CAAAAACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTA
16196 GT
962 GT
16198 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGA
1 ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGA
*
16263 AAAAATATATAATTCAACGCCAAAAAATTTGAAGGTTTTTCACGATTCTAATATCGTTTTTCCAA
66 AAAAATATATAATTCAACGCCAAAAAAATTGAAGGTTTTTCACGATTCTAATATCGTTTTTCCAA
16328 TTTTACCGAATTTATTTCTAATTAAATCGAAATAAATATTCAGATGCACGTAAAAACAAATCCTT
131 TTTTACCGAATTTATTTCTAATTAAATCGAAATAAATATTCAGATGCACGTAAAAACAAATCCTT
* * * *
16393 AAATCCAATATGGCTGAGATTTGATTAGACGAATATAGATATTTCAAGGAGTCTTTATGCCAAAA
196 AAATTCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAA
16458 ACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACA
261 ACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACA
16523 CGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGAAAA
326 CGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGAAAA
* *
16588 AATATATAATTCAACGCCAAAATAATTGAAGGATTTTCACGCTTCTAATATCGTTTTTCCATTTT
391 AATATATAATT-AACGCCAAAAAAATTGAAGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTT
* *
16653 TACCGAATTTATTTCTAATCAAATCGAAATAAGATTCAGATGCACGTAAAAGCATATCCTCAAAT
455 TACCGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAAAGCATATCCTTAAAT
* * ** * *
16718 TCAATGTGGCTGAGATTTGGTTCA-ATGAATATAAATATTTGAAGGAGTATTTGCGCCCAAAATC
520 TCAATGTGGCTGAGATTTGATT-AGATGAATA-AAATATTTGAAGGAGTCTTTATGCCAAAAACC
* * * * * ** * *
16782 TTGCAAAATTGAGCCGGGACTCCGAAACGCGTCTTCAGTAAAATATGGTGATGGTTCGTACACGA
583 ATGCAAAATTGAGACGGGACCCCGAAACGCGTTTTCAGCAAAA-ACCGTGATAGTTAGTACACGA
* * * * *
16847 TTTCGGCAAAAATTTAGCAAAAACTGACGCGAAAAATTTTTCCTAAATTTTTCGCCACAATACTC
647 TTTCGGC---AA-TT---AAAAATTGACCCGAAAAGTTTTTCCTCAATTTTTCGTCACAATACTC
* * *
16912 TGGAAAATATATAATTTAACGCCA
705 AGAAAAATATATAATTCAACGCCA
Statistics
Matches: 3246, Mismatches: 315, Indels: 192
0.86 0.08 0.05
Matches are distributed among these distances:
963 1 0.00
964 25 0.01
965 63 0.02
966 218 0.07
967 222 0.07
968 24 0.01
969 8 0.00
970 241 0.07
971 83 0.03
972 358 0.11
973 80 0.02
974 1094 0.34
975 196 0.06
976 122 0.04
977 92 0.03
978 323 0.10
979 96 0.03
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (963 bp):
ACACGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGA
AAAAATATATAATTCAACGCCAAAAAAATTGAAGGTTTTTCACGATTCTAATATCGTTTTTCCAA
TTTTACCGAATTTATTTCTAATTAAATCGAAATAAATATTCAGATGCACGTAAAAACAAATCCTT
AAATTCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAA
ACCATGCAAAACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACA
CGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTCTTCTTCACAATACTCAGAAAA
AATATATAATTAACGCCAAAAAAATTGAAGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTT
ACCGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAAAGCATATCCTTAAATT
CAATGTGGCTGAGATTTGATTAGATGAATAAAATATTTGAAGGAGTCTTTATGCCAAAAACCATG
CAAAATTGAGACGGGACCCCGAAACGCGTTTTCAGCAAAAACCGTGATAGTTAGTACACGATTTC
GGCAATTAAAAATTGACCCGAAAAGTTTTTCCTCAATTTTTCGTCACAATACTCAGAAAAATATA
TAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAATTTTACCG
AATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCACGTAAAAACAAATCCTTAAATTCAAT
GTGGCTGAGATTTGATTAGATGAATAAAGATATTTTAGGGAATCTTTATGCCAAAAACCATGCAA
AACTGAGACGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGT
Done.