Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019679.1 Corchorus olitorius cultivar O-4 contig19712, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6342
ACGTcount: A:0.19, C:0.23, G:0.25, T:0.33


Found at i:942 original size:22 final size:22

Alignment explanation


    Indices: 896--944  Score: 62
    Period size: 22  Copynumber: 2.2  Consensus size: 22

        886 TTTCAGAACC

                          *       
        896 CGAAGCGACGTGCCTCAAAACT
          1 CGAAGCGACGTGCCGCAAAACT

                        *   *   * 
        918 CGAAGCGACGTGGCGCGAAATT
          1 CGAAGCGACGTGCCGCAAAACT

                 
        940 CGAAG
          1 CGAAG

        945 TACAGTTTCC


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.31, C:0.27, G:0.31, T:0.12


Consensus pattern (22 bp):   
CGAAGCGACGTGCCGCAAAACT
Done.