Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019683.1 Corchorus olitorius cultivar O-4 contig19716, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12106
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.31


Found at i:8072 original size:40 final size:40

Alignment explanation


    Indices: 8017--8099  Score: 166
    Period size: 40  Copynumber: 2.1  Consensus size: 40

       8007 TCATGATTAA

                                                    
       8017 CATATATTAGTTTTCTCCCGACCAATCAACGTCAACACAG
          1 CATATATTAGTTTTCTCCCGACCAATCAACGTCAACACAG

                                                    
       8057 CATATATTAGTTTTCTCCCGACCAATCAACGTCAACACAG
          1 CATATATTAGTTTTCTCCCGACCAATCAACGTCAACACAG

               
       8097 CAT
          1 CAT

       8100 GAGAAAAGGC


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  40   43  1.00

ACGTcount: A:0.33, C:0.30, G:0.10, T:0.28


Consensus pattern (40 bp):   
CATATATTAGTTTTCTCCCGACCAATCAACGTCAACACAG

Found at i:11497 original size:25 final size:24

Alignment explanation


    Indices: 11469--11525  Score: 80
    Period size: 25  Copynumber: 2.4  Consensus size: 24

      11459 GTGGATTGTA

                        *            
      11469 AAATAAATTGAATAATTAAGACATT
          1 AAATAAATTGAAGAATTAA-ACATT

                     *              
      11494 AAATAAATTTAAGAATTAAACATT
          1 AAATAAATTGAAGAATTAAACATT

                     
      11518 AAA-AAATT
          1 AAATAAATT

      11526 CAAGGTTGAC


Statistics
Matches: 30,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  23    5  0.17
  24    8  0.27
  25   17  0.57

ACGTcount: A:0.60, C:0.04, G:0.05, T:0.32


Consensus pattern (24 bp):   
AAATAAATTGAAGAATTAAACATT
Done.