genome.fa.s19685.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019685.1 Corchorus olitorius cultivar O-4 contig19718, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  220974

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
954--2888	649	3.0	645	78	9	1942	33	13	15	37	1.87
4845--4918	35	2.1	35	95	2	132	36	12	5	45	1.64
5490--5547	29	2.0	30	86	3	82	50	3	3	43	1.36
6967--7013	17	2.8	16	81	9	58	34	21	21	23	1.97
11527--11556	2	15.0	2	100	0	60	50	0	0	50	1.00
12488--12540	25	2.1	26	82	10	65	15	20	15	49	1.80
13923--13966	21	2.1	21	82	0	52	54	13	11	20	1.69
14421--14466	2	21.5	2	91	8	65	47	0	6	45	1.28
14421--14466	24	2.0	23	95	4	83	47	0	6	45	1.28
14630--14797	56	3.0	56	97	0	320	34	23	1	39	1.66
14861--14943	42	2.0	42	92	0	139	31	6	15	46	1.70
15702--15748	23	2.0	24	88	12	71	63	10	21	4	1.43
17859--17932	37	2.1	34	83	14	96	41	9	13	35	1.77
18814--18843	2	15.0	2	100	0	60	50	0	0	50	1.00
25234--25258	2	12.5	2	100	0	50	48	0	52	0	1.00
42064--42098	11	3.2	11	83	0	52	77	17	5	0	0.96
43146--43249	55	1.9	55	89	0	163	16	34	18	30	1.93
43267--43343	39	2.0	40	92	2	129	27	16	37	18	1.92
49352--49404	12	4.4	12	87	0	61	24	7	30	37	1.83
49354--49394	4	10.2	4	94	0	64	26	4	24	43	1.74
52962--53003	18	2.3	19	88	8	61	2	14	0	83	0.75
60498--60554	1	57.0	1	75	0	51	0	3	8	87	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61211--61235	13	1.9	13	100	0	50	40	4	8	48	1.51
74381--74831	250	1.8	250	94	0	796	33	17	17	30	1.94
75760--75940	95	1.9	95	100	0	362	33	11	23	32	1.90
77093--77121	2	14.5	2	100	0	58	51	0	0	48	1.00
82750--82862	60	1.9	60	87	3	165	38	16	14	30	1.88
82923--83085	60	2.7	60	86	4	222	30	17	16	35	1.92
83477--83639	80	2.0	80	95	0	290	39	17	15	27	1.90
89604--89644	20	2.0	21	85	4	57	56	4	9	29	1.53
94484--94855	186	2.1	176	87	6	541	40	16	18	25	1.91
94484--94855	185	2.0	179	89	5	568	40	16	18	25	1.91
96825--96853	14	2.1	14	100	0	58	41	6	6	44	1.58
100225--100260	18	2.0	18	89	10	56	5	27	16	50	1.68
101642--101684	14	2.8	15	82	13	52	53	2	2	41	1.26
101642--101691	10	4.9	10	77	22	59	54	2	2	42	1.23
108356--108499	72	2.0	72	100	0	288	30	13	18	37	1.89
126589--126622	5	6.6	5	96	3	59	2	17	0	79	0.86
138807--138844	17	2.2	17	90	0	58	21	28	21	28	1.98
138814--138854	17	2.4	17	87	0	55	19	21	21	36	1.95
145109--145135	4	6.8	4	100	0	54	77	0	22	0	0.76
149135--149195	22	2.8	22	82	0	68	26	42	24	6	1.79
155329--155368	21	1.9	21	100	0	80	47	15	7	30	1.72
156640--156723	44	1.9	44	95	0	150	44	15	5	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160884--160932	17	2.9	16	85	8	62	34	22	20	22	1.97
176004--176098	40	2.3	43	87	7	142	17	16	14	50	1.78
177194--177230	2	18.0	2	94	5	65	48	2	0	48	1.15
177363--177570	107	1.9	107	99	0	407	42	6	10	40	1.64
181078--181206	59	2.2	60	84	6	165	33	18	20	27	1.96
181235--181338	31	3.5	31	70	21	112	24	21	22	32	1.98
186284--186364	40	2.0	40	100	0	162	27	24	28	19	1.99
186324--186546	76	3.0	76	90	1	351	31	26	23	18	1.97
195067--195109	18	2.4	19	88	7	63	48	25	9	16	1.75
197416--197469	21	2.7	19	80	5	63	31	20	11	37	1.88
198896--198933	11	3.5	11	85	10	51	57	2	0	39	1.12
204653--204740	43	2.0	43	97	0	167	26	31	13	28	1.94
209909--209968	29	2.1	29	100	0	120	20	11	23	45	1.83
214512--214542	15	2.1	15	94	5	55	51	6	0	41	1.27

Tables:   1

The End!