Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019686.1 Corchorus olitorius cultivar O-4 contig19719, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19646

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
738--825
3
29.3
3
100
0
176
32
0
0
67
0.91
2006--2047
5
8.4
5
89
10
59
45
0
0
54
0.99
2006--2052
15
3.1
16
84
9
62
46
0
0
53
1.00
2434--2578
22
6.5
22
67
17
75
40
12
9
37
1.76
2434--2515
22
3.8
21
79
4
83
39
9
12
39
1.76
2594--2646
22
2.4
22
77
0
61
24
16
9
49
1.76
3894--3954
30
2.0
30
81
15
72
45
1
6
45
1.39
16139--17915
332
5.4
331
79
6
1675
33
14
15
36
1.88
16148--17915
663
2.7
658
81
5
1965
33
14
15
36
1.88
17928--19512
335
4.8
331
77
8
1268
34
14
15
35
1.88
18177--19462
667
1.9
667
82
6
1584
34
14
15
35
1.88

Tables:   1

The End!