Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019688.1 Corchorus olitorius cultivar O-4 contig19721, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25372

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
302--1764
315
4.6
315
77
9
1243
33
13
16
36
1.88
1292--2213
480
1.9
472
80
8
1076
34
13
15
36
1.87
10247--10289
12
3.7
12
87
3
61
60
9
25
4
1.47
13088--13113
1
26.0
1
100
0
52
0
0
0
100
0.00
13148--13208
21
2.8
22
85
7
79
21
18
0
60
1.36
13172--13207
8
4.9
8
80
19
51
22
22
0
55
1.44
13180--13653
241
2.0
235
88
4
713
38
10
6
44
1.66
13696--13731
15
2.4
15
90
0
54
47
0
0
52
1.00
16557--18269
328
5.2
329
78
8
1533
33
14
15
36
1.88
23919--23954
16
2.2
16
95
0
63
19
19
5
55
1.62

Tables:   1

The End!