Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019689.1 Corchorus olitorius cultivar O-4 contig19722, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2781
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38


Found at i:1999 original size:122 final size:122

Alignment explanation


    Indices: 1866--2105  Score: 353
    Period size: 122  Copynumber: 1.9  Consensus size: 122

       1856 TTGTTTAAAG

                 *                                                           
       1866 TTTTATAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATAT-CTT-TA-TA-
          1 TTTTACAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCTTATACTAT

                           *                                             
       1927 ATTTTTACCATTTTATTATTTTAATTAAAAAACTTATATATATTAGAATTTTTAAATATAC
         66 ATTTTTACCATTTTACTA----AATTAAAAAACTTATATATATTAGAATTTTTAAATATAC

                                       *                                     
       1988 TTTTACAGTTTTACTCAACTAAAAACTTTATTTTTATTTAATTAAATCTAATATCCTTATACCTA
          1 TTTTACAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCTTATA-CTA

                                                                 
       2053 TTTTATTTTTACCATTTTACTAAATTAAAAAACTTATATATATTAGAATTTTT
         65 ---TATTTTTACCATTTTACTAAATTAAAAAACTTATATATATTAGAATTTTT

       2106 TAGATATATT


Statistics
Matches: 107,  Mismatches: 3, Indels: 12
        0.88            0.02        0.10

Matches are distributed among these distances:
 122   52  0.49
 123    3  0.03
 124    2  0.02
 126   33  0.31
 130   17  0.16

ACGTcount: A:0.38, C:0.10, G:0.02, T:0.50


Consensus pattern (122 bp):   
TTTTACAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCTTATACTAT
ATTTTTACCATTTTACTAAATTAAAAAACTTATATATATTAGAATTTTTAAATATAC
Done.