genome.fa.s19690.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019690.1 Corchorus olitorius cultivar O-4 contig19723, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55031

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--42	2	18.5	2	94	5	67	47	0	2	50	1.15
1107--1234	68	1.9	66	88	6	195	53	11	9	25	1.66
2574--2639	18	3.5	18	73	18	71	24	18	34	22	1.96
2568--2652	39	2.2	40	95	2	154	31	14	30	23	1.94
2706--2768	24	2.6	25	87	12	87	23	19	44	12	1.85
6965--6996	3	10.3	3	93	6	55	34	0	0	65	0.93
16805--16830	1	26.0	1	100	0	52	100	0	0	0	0.00
19127--19184	27	2.1	28	90	3	91	22	22	12	43	1.86
19283--19357	29	2.6	29	80	6	89	42	16	21	20	1.89
21289--21366	30	2.7	28	77	15	77	30	14	25	29	1.94
22584--22631	16	3.1	15	87	6	60	70	0	25	4	1.04
22973--23007	18	1.9	18	94	0	61	62	0	14	22	1.31
34883--34967	43	2.0	43	97	0	161	21	24	21	32	1.97
35100--35132	15	2.2	15	100	0	66	18	30	0	51	1.46
37486--37567	39	2.1	39	95	0	146	30	4	43	20	1.73
48779--49918	185	6.1	185	80	7	1341	40	12	15	31	1.84
48784--49916	378	3.0	368	83	7	1401	40	12	15	31	1.84
49513--50246	328	2.2	327	93	0	1272	41	11	14	32	1.82
49918--50358	185	2.4	187	89	1	683	43	11	13	31	1.80
50734--51188	237	1.9	237	89	0	705	40	13	13	33	1.83
51181--51494	159	2.0	157	91	2	513	42	11	14	31	1.81
51597--51933	184	1.8	184	87	1	505	43	10	14	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54392--54431	21	1.9	21	89	0	62	40	10	15	35	1.80

Tables:   1

The End!