Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019692.1 Corchorus olitorius cultivar O-4 contig19725, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22911
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:18591 original size:46 final size:46

Alignment explanation


    Indices: 18524--18617  Score: 188
    Period size: 46  Copynumber: 2.0  Consensus size: 46

      18514 TTACAATTTA

                                                          
      18524 AATAAATCTTACAAATTACAAACAAACTCACATTCTGTGAAAGTTG
          1 AATAAATCTTACAAATTACAAACAAACTCACATTCTGTGAAAGTTG

                                                          
      18570 AATAAATCTTACAAATTACAAACAAACTCACATTCTGTGAAAGTTG
          1 AATAAATCTTACAAATTACAAACAAACTCACATTCTGTGAAAGTTG

              
      18616 AA
          1 AA

      18618 CTCAAGACCT


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   48  1.00

ACGTcount: A:0.47, C:0.17, G:0.09, T:0.28


Consensus pattern (46 bp):   
AATAAATCTTACAAATTACAAACAAACTCACATTCTGTGAAAGTTG
Done.