genome.fa.s19698.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019698.1 Corchorus olitorius cultivar O-4 contig19731, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42314

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7--2414	981	2.4	980	81	6	2582	35	15	14	33	1.88
531--2626	654	3.2	648	80	7	2043	35	15	13	34	1.88
4073--4753	341	2.0	342	92	2	1134	34	14	20	29	1.93
7251--7382	31	4.3	31	89	0	183	17	25	24	33	1.96
9479--9573	44	2.2	44	96	0	172	43	15	7	33	1.75
11630--11672	8	5.5	8	83	5	61	62	16	2	18	1.43
11630--11672	15	2.8	16	78	7	61	62	16	2	18	1.43
11626--11672	23	2.0	23	100	0	94	61	17	4	17	1.49
12184--15381	336	9.6	327	78	8	2870	33	14	15	36	1.88
13205--15381	330	6.5	329	80	6	2170	32	13	16	37	1.88
20432--20462	16	1.9	16	93	0	53	35	22	25	16	1.94
20813--22082	669	1.9	672	81	5	1558	38	16	13	32	1.87
20668--22654	329	6.0	327	74	11	1265	37	15	13	33	1.86
27543--27703	79	2.1	79	95	1	288	42	12	10	34	1.77
28193--28354	56	2.9	56	92	0	272	35	20	2	41	1.66
28337--28578	118	2.1	118	97	0	457	36	7	14	41	1.74
28538--28618	42	1.9	42	89	0	126	25	7	17	49	1.72
31586--31629	14	2.9	14	80	12	52	40	0	9	50	1.34
31589--31634	19	2.6	18	86	10	67	41	0	6	52	1.27
31589--31637	5	9.6	5	80	12	55	40	0	6	53	1.26
32609--32633	4	6.2	4	100	0	50	76	0	0	24	0.80
34833--35278	220	2.0	221	88	5	668	42	8	12	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38469--38498	2	15.0	2	92	0	51	50	3	0	46	1.18
39293--39332	2	20.0	2	100	0	80	50	0	0	50	1.00
41533--41602	36	1.9	36	91	0	113	21	10	8	60	1.55

Tables:   1

The End!