Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019703.1 Corchorus olitorius cultivar O-4 contig19736, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37130

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
170--771
308
2.0
308
90
0
961
38
12
11
37
1.80
2193--2235
22
2.0
22
95
0
77
34
18
4
41
1.71
12457--12499
2
21.5
2
100
0
86
48
0
0
51
1.00
12926--13006
41
2.0
41
92
0
135
41
16
12
29
1.84
15251--15296
6
7.8
6
83
9
51
2
15
2
80
0.91
15967--16004
19
2.0
20
94
5
69
39
0
0
60
0.97
15974--16015
19
2.2
19
86
0
57
42
2
0
54
1.13
16741--16783
18
2.4
18
84
7
52
65
9
0
25
1.22
17140--17176
13
2.8
13
87
0
56
16
43
8
32
1.77
17175--17251
40
1.9
40
91
0
127
44
14
12
28
1.82
18497--18546
24
2.1
24
100
0
100
30
16
26
28
1.96
25223--25274
2
25.0
2
86
3
59
44
3
3
48
1.39
25897--25927
16
1.9
16
93
0
53
51
3
3
41
1.34
29683--29757
36
2.1
36
97
0
141
34
14
17
33
1.90
31895--31969
25
3.2
25
64
24
72
34
9
16
40
1.80
31882--31975
45
2.1
45
100
0
188
36
8
12
42
1.74
36762--36791
15
2.0
15
100
0
60
46
26
6
20
1.75

Tables:   1

The End!