Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019704.1 Corchorus olitorius cultivar O-4 contig19737, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44998

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12901--12930
6
5.2
6
92
8
53
0
33
0
66
0.92
25877--25908
2
16.0
2
100
0
64
50
0
0
50
1.00
27096--27154
30
2.0
30
93
0
100
33
13
28
23
1.93
27959--28008
25
2.0
25
100
0
100
24
24
16
36
1.94
35571--35784
42
5.0
42
89
1
329
42
10
16
29
1.82
35573--35784
43
5.0
43
89
2
338
42
10
16
30
1.82
35573--35784
85
2.5
85
96
0
388
42
10
16
30
1.82
38871--38901
3
10.3
3
92
0
53
64
0
35
0
0.94
40826--40851
2
13.0
2
100
0
52
50
0
0
50
1.00
41494--41641
76
1.9
76
94
2
262
27
4
24
43
1.74
41962--42884
333
2.8
331
87
4
1272
33
13
16
36
1.88
42654--43104
225
2.0
228
82
3
554
33
16
15
35
1.90
42335--43442
558
2.0
555
83
4
1410
33
14
15
36
1.89
42882--44104
332
3.7
329
84
4
1449
33
14
16
35
1.89
43877--44330
226
2.0
224
81
4
520
33
17
14
34
1.91

Tables:   1

The End!