Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019705.1 Corchorus olitorius cultivar O-4 contig19738, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46717

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--683
331
2.1
330
89
2
1050
34
13
17
34
1.88
154--1227
557
1.9
557
79
4
1216
33
15
16
35
1.90
681--2897
663
3.3
660
85
3
2688
33
14
16
35
1.89
680--2897
332
6.7
331
85
4
2511
33
14
16
35
1.89
2700--3123
225
1.9
226
81
4
525
32
16
15
35
1.90
2412--3412
555
1.8
556
80
4
1212
31
15
16
36
1.90
2957--4162
335
3.6
333
81
6
1338
33
15
14
36
1.87
6036--6383
40
8.6
39
90
3
473
29
27
6
36
1.82
26233--26300
32
2.1
32
86
5
93
26
25
8
39
1.85
26316--26395
32
2.5
32
95
2
144
28
16
30
25
1.96
32944--33081
31
4.5
31
76
3
125
21
23
23
31
1.99
33457--33491
7
4.9
7
93
6
61
14
0
0
85
0.59
33457--33490
15
2.3
15
100
0
68
11
0
0
88
0.52
42754--42853
50
2.0
50
96
0
182
26
12
19
43
1.85
45663--45702
18
2.2
18
86
0
53
60
2
32
5
1.32

Tables:   1

The End!