Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019709.1 Corchorus olitorius cultivar O-4 contig19742, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 34139
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:611 original size:333 final size:332
Alignment explanation
Indices: 5--1282 Score: 2190
Period size: 333 Copynumber: 3.9 Consensus size: 332
1 ACCT
* * * *
5 GAAAGATTTTTTCTCAATTTTTACCTAGAATACTCATAAAAAATATATAATTTAACGCCAAAAAG
1 GAAAGATTTTTCCTCAATTTTTTCCCAGAATACTCATAAAAAATATATAATTCAACGCCAAAAAG
* *
70 ATTGGAGAGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTCTTTTTAATTATTTTCTAAATTA
66 ATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTT-TTCTTAATTATTTTCTAAATTA
135 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATCATTGCTGAGATTTGGC
130 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATCATTGCTGAGATTTGGC
* *
200 TAGATGAAAATAGATATTTCAAGGAGCCTTGGCGTCAAAAATCATGCAAAACTTAGTCGGGCCGC
195 TAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAAAACTTAGTCGGGCCAC
265 CAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAA
260 CAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAA
330 ATTGACCC
325 ATTGACCC
338 GAAAGATTTTTCCTCAATTTTTTCCTCAGAATACTCATAAAAAATATATAATTCAACGCCAAAAA
1 GAAAGATTTTTCCTCAATTTTTTCC-CAGAATACTCATAAAAAATATATAATTCAACGCCAAAAA
403 GATTGGAGGGCTTTTCACGCTTCTAATATCG-TTTTCGTTTTTTTTCTTAATTATTTTCTAAATT
65 GATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTC-TTTTTTTTCTTAATTATTTTCTAAATT
467 AAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATCATTGCTGAGATTTGG
129 AAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATCATTGCTGAGATTTGG
* *
532 CTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAATATCATGCAAAACTTAGTCGGGCCG
194 CTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAAAACTTAGTCGGGCCA
597 CCAGAACGCGTTTTTAGCCTAAAA-CGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAA
259 CCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAA
661 AATTGACCC
324 AATTGACCC
*
670 GAAAGATTTTTTCTCAATTTTTTCCCAGAATACTCATAAAAAATATATAATTCAACGCCAAAAAG
1 GAAAGATTTTTCCTCAATTTTTTCCCAGAATACTCATAAAAAATATATAATTCAACGCCAAAAAG
*
735 ATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTTCTTAATTATTTTCAAAATTA
66 ATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTC-TTTTTTTTCTTAATTATTTTCTAAATTA
*
800 AATCGAAACAAGATTCAGATGCTCCTAAAAACAAATCCTTAAATCCATCATTGCTGAGATTTGGC
130 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATCATTGCTGAGATTTGGC
* * * *
865 AAGATGAAAATTGATATTTCAAGGAGTCTAGGCCTCAAAAATCATGCAAAACTTAGTCGGGCCAC
195 TAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAAAACTTAGTCGGGCCAC
* * * **
930 CAAAACGCGTTTTTAACCTAAAACTGTGATGGTTAGTACACGATTTCAACTAAAATTTTGCAAAA
260 CAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAA
*
995 ATTGATCC
325 ATTGACCC
* *
1003 GAAAGATTTTTCCTCACTTTTTTCCCAGAATACTCATAAAAAATATATGATTCAACGCCAAAAAG
1 GAAAGATTTTTCCTCAATTTTTTCCCAGAATACTCATAAAAAATATATAATTCAACGCCAAAAAG
* * *
1068 ATTGGAGGGCTTTTCA-GCATCTAGT-TCG-TTTTCTTTTTTTTCTTAATTAATTTCTAAATTAA
66 ATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTCTTAATTATTTTCTAAATTAA
* *
1130 ATCGAAACAAGATTAAGATGTTCGTAAAAACAAATCCTTAAATCCATCATTGCTGAGATTTGGCT
131 ATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATCATTGCTGAGATTTGGCT
*
1195 AGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAATAA-CATGCAAAATTTAGTCGGGCCAC
196 AGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAA-AATCATGCAAAACTTAGTCGGGCCAC
1259 CAGAACGCGTTTTTAGCCTAAAAC
260 CAGAACGCGTTTTTAGCCTAAAAC
1283 TGAGACGATT
Statistics
Matches: 899, Mismatches: 41, Indels: 14
0.94 0.04 0.01
Matches are distributed among these distances:
329 167 0.19
330 7 0.01
331 73 0.08
332 256 0.28
333 323 0.36
334 73 0.08
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.33
Consensus pattern (332 bp):
GAAAGATTTTTCCTCAATTTTTTCCCAGAATACTCATAAAAAATATATAATTCAACGCCAAAAAG
ATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTCTTAATTATTTTCTAAATTAA
ATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATCATTGCTGAGATTTGGCT
AGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAAAACTTAGTCGGGCCACC
AGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAA
TTGACCC
Found at i:1386 original size:84 final size:84
Alignment explanation
Indices: 1245--1415 Score: 333
Period size: 84 Copynumber: 2.0 Consensus size: 84
1235 ACATGCAAAA
1245 TTTAGTCGGGCCACCAGAACGCGTTTTTAGCCTAAAACTGAGACGATTTCGTCTAAAGTTTTACA
1 TTTAGTCGGGCCACCAGAACGCGTTTTTAGCCTAAAACTGAGACGATTTCGTCTAAAGTTTTACA
1310 AAAATTGACCCGAAAGATT
66 AAAATTGACCCGAAAGATT
*
1329 TTTAGTCGGGCCACCAGAACGCGTTTTTAGCCTAAAACTGTGACGATTTCGTCTAAAGTTTTACA
1 TTTAGTCGGGCCACCAGAACGCGTTTTTAGCCTAAAACTGAGACGATTTCGTCTAAAGTTTTACA
1394 AAAATTGACCCGAAAGATT
66 AAAATTGACCCGAAAGATT
1413 TTT
1 TTT
1416 CCTCAATTTT
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 86 1.00
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (84 bp):
TTTAGTCGGGCCACCAGAACGCGTTTTTAGCCTAAAACTGAGACGATTTCGTCTAAAGTTTTACA
AAAATTGACCCGAAAGATT
Found at i:14016 original size:221 final size:217
Alignment explanation
Indices: 13636--14048 Score: 693
Period size: 221 Copynumber: 1.9 Consensus size: 217
13626 ATCAACTTAT
*
13636 TGAAAATCCCAAGTCACACAGCACAAGGCACACACAACATCATTTTACCAAGAGTAGTTAATGAA
1 TGAAAATCCCAAGTCACACAGCACAAGGCACACACAACAGCATTTTACCAAGAGTAGTTAATGAA
* *
13701 GTTAAAATGTAACTTACTGAATTCATGAGACAATCAACTTATTGAAGAATTACAGAGCAAAATAA
66 GTTAAAATGTAACTTACTGAATTCATGAGACAATCAACTTATTGAAGAATAACAAAGCAAAATAA
13766 AGAAATCTACTTGCCTAAAGAGCGGATCAATGTAGACTTACCAGATCCTGAAGGTCGAGCAGTTT
131 AGAAATCTACTTGCCTAAAGAGCGGATCAATGTAGACTTACCAGATCCTGAAGGTCGAGCAGTTT
13831 CTCTATCCCCTGACAGAACTGC
196 CTCTATCCCCTGACAGAACTGC
* *
13853 TGAAAATCCCAAGTCACACAGCATAAGGGCACACATAACAGCATTTTACCAAGGAG-AGTAATCA
1 TGAAAATCCCAAGTCACACAGCACAA-GGCACACACAACAGCATTTTACCAA-GAGTAGT--T-A
*
13917 ATGAAGTTAAAATGTAACTTATTGAATTCATGAGACAATCAACTTATTGAAGAATAACAAAGCAA
61 ATGAAGTTAAAATGTAACTTACTGAATTCATGAGACAATCAACTTATTGAAGAATAACAAAGCAA
* * *
13982 AATGAAGAAATCTACTTGCCTAAAGAGTGGATCAATGTAGACTTACCGGATCCTGAAGGTCGAGC
126 AATAAAGAAATCTACTTGCCTAAAGAGCGGATCAATGTAGACTTACCAGATCCTGAAGGTCGAGC
14047 AG
191 AG
14049 AACAATCTAC
Statistics
Matches: 182, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
217 25 0.14
218 26 0.14
219 3 0.02
220 1 0.01
221 127 0.70
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (217 bp):
TGAAAATCCCAAGTCACACAGCACAAGGCACACACAACAGCATTTTACCAAGAGTAGTTAATGAA
GTTAAAATGTAACTTACTGAATTCATGAGACAATCAACTTATTGAAGAATAACAAAGCAAAATAA
AGAAATCTACTTGCCTAAAGAGCGGATCAATGTAGACTTACCAGATCCTGAAGGTCGAGCAGTTT
CTCTATCCCCTGACAGAACTGC
Found at i:14321 original size:172 final size:173
Alignment explanation
Indices: 14035--14380 Score: 534
Period size: 172 Copynumber: 2.0 Consensus size: 173
14025 TACCGGATCC
* * *
14035 TGAAGGTCGAGCAGAACAATCTACGCGAGCAGTTTCTCTATCCCCTGTCAGAAATGCTGAAAATC
1 TGAAGGTCGAGCAGAACAATCTACGCGAACAGTTTCTCTATCCCCTGACAGAAATGCTAAAAATC
* * *
14100 CCTAGTCACACAGCATAAGGGCACACACAAACGAGAAAACTTAAAACACACGACATTCATATTTT
66 CCTAGTCACACAGCATAAGAGCACACACAAACGAGAAAACTTAAAACACACGACAGTCATACTTT
14165 CATAGATGAGCC-AATTATACCTTCTCTCTGAGTAGATCTCAA
131 CATAGATGAGCCAAATTATACCTTCTCTCTGAGTAGATCTCAA
* * *
14207 TGAAGGTCGAGTAGAACAATCTACGCGAACAGTTTCTTTTTCCCCTGACAGAAATGCTAAAAAT-
1 TGAAGGTCGAGCAGAACAATCTACGCGAACAGTTTCTCTATCCCCTGACAGAAATGCTAAAAATC
* * * * *
14271 CCTAAGTCACACATCATAAGAGCATACACAAATGAGAAAACTTAAAACACACGGCAGTCATGCTT
66 CCT-AGTCACACAGCATAAGAGCACACACAAACGAGAAAACTTAAAACACACGACAGTCATACTT
14336 TCATAGATGAGCCAAAATTATACCTTCTCTCTGAGTAGATCTCAA
130 TCATAGATGAGCC-AAATTATACCTTCTCTCTGAGTAGATCTCAA
14381 ATTCCCCTGT
Statistics
Matches: 157, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
171 3 0.02
172 124 0.79
174 30 0.19
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (173 bp):
TGAAGGTCGAGCAGAACAATCTACGCGAACAGTTTCTCTATCCCCTGACAGAAATGCTAAAAATC
CCTAGTCACACAGCATAAGAGCACACACAAACGAGAAAACTTAAAACACACGACAGTCATACTTT
CATAGATGAGCCAAATTATACCTTCTCTCTGAGTAGATCTCAA
Found at i:14504 original size:18 final size:18
Alignment explanation
Indices: 14483--14534 Score: 86
Period size: 18 Copynumber: 2.8 Consensus size: 18
14473 TCCGAACATA
14483 AGGTGGATCAATGGCAGC
1 AGGTGGATCAATGGCAGC
*
14501 AGGTGGATCAATGGCTGC
1 AGGTGGATCAATGGCAGC
14519 AGGTGGATCAACTGGC
1 AGGTGGATCAA-TGGC
14535 TTTTTGGAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
18 28 0.88
19 4 0.12
ACGTcount: A:0.25, C:0.17, G:0.38, T:0.19
Consensus pattern (18 bp):
AGGTGGATCAATGGCAGC
Found at i:16376 original size:14 final size:14
Alignment explanation
Indices: 16357--16385 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
16347 AGACTTGATA
16357 ATGAAATTAAGACT
1 ATGAAATTAAGACT
16371 ATGAAATTAAGACT
1 ATGAAATTAAGACT
16385 A
1 A
16386 AGTGAGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (14 bp):
ATGAAATTAAGACT
Found at i:24113 original size:867 final size:850
Alignment explanation
Indices: 22437--24129 Score: 2513
Period size: 867 Copynumber: 2.0 Consensus size: 850
22427 CCTTATTATT
*
22437 GGTAGTTTGTATCCTCAAATTTAAGAAGTTCAAATGCTTTCAGAAACTCAAGTGGATGAAAACCA
1 GGTAGTTTCTATCCTCAAATTTAAGAAGTTCAAATGCTTTCAGAAACTCAAGTGGATGAAAACCA
*
22502 GCTATCTAATGTTGCTTAAGCATCTTGCAAGAAAAATTCAATAATGGTAAGCCAGCATGTGCTAG
66 GCTATCTAATGTTGCTTAAGCATCTTGCAAGAAAAATTCAATAATGGTAAGCCAGCATATGCTAG
**
22567 CTCTGTTAAGTCAAAAAGATAACAAGGAATTCCTGAATAATTCTTGCCGTTTGGGAGTTTTCTTT
131 CTCTGTTAAGTCAAAAAGATAACAAGGAATTCCTGAATAATTCTTGCCACTTGGGAGTTTTCTTT
* *
22632 AATGTTAAATATTTAAAGTTGGACTAAGTTAAATCCAAACAGTTTGTTTACCTTTTTTTTTAAAA
196 AATGCTAAATATTTAAAGTTGGACTAAGTTAAATCCAAACAGTTTGTTTACCTTTTTTCTT----
* *
22697 AAAAAAAATTAAATTAAATTAGGAATAATCAAGTAAAATATTGTGTCTAACTTGTGGTTTAAGAG
257 -------ATT-AA-TAAATTAGGAATAATCAAGTAAAATATTGTATCTAAATTGTGGTTTAAGAG
* *
22762 TCTTTTGATTACTTCTTGCAGGTGCATACAAATTATTGCAGCCATAGATGCCTGCATGTATTGCA
313 TCTTTTGATTACTTCTTGCAGGTGAATACAAATTATTGCAGCCATAGATGCCTGCATATATTGCA
*
22827 TCTCATCTCTCAATGTGGGGTTAGTCTTGCATTTCTTCACATGCGTTCAGCTTCACTCAGACCTG
378 TCTCATCTCTCAATGTGGGGTTAGTATTGCATTTCTTCACATGCGTTCAGCTTCACTCAGACCTG
* *
22892 GAACATGGGATCTTACATAGTTTACATAGTTCACATCAAGTCTATGTAAGTGGCTCATGACTTCT
443 GAACATGGGATCTTACATAGTTTACATAG-T---ATCAAGTCTATGTAAGTGCCTCATGACATCT
* * * *
22957 TTATCTGATTCTTGATATCAAGTGACTTCCTTAAATGGTTGCTTGACAATTTAAATGCATCATTC
504 TTATATGATTCTTGATATCAAGTGACTTCCTGAAATGGTTCCTTGACAATCTAAATGCATCATTC
*
23022 TGCTGCCCTTTACAGTATTTTGTGGAACAATTATTTTACTGGAATCATCACTAAAGGGATCACTG
569 TGCTGCCCTTTACAGTATTTTGTGGAACAATTATTTTACTGGAATCATCACCAAAGGGATCACTG
*
23087 AGCTCAAGGAATTGGAGGGGTTGGACTTGGGATATAAGAATTGCAGTAGACCTCTTCCCCCTGAA
634 AGATCAAGGAATTGGAGGGGTTGGACTTGGGATATAAGAATTGCAGTAGACCTCTTCCCCCTGAA
* * *
23152 CTTGGGAGTAATCTGTCACTAACGATCTTGTAAGTCAATATTGTCAAAAAGTTTGGTTCTCAGTC
699 CTTGGCAGAAATCTGTCACTAACGATCTTGTAAGTCAATATTGTCAAAAAGTTTGGTTCTCAGAC
*
23217 TCTGGAGGTTCTTTATCTCTCACCAGTAGAATAATTCAATTTTATGCCTATTTTGCGGTTTACTG
764 TCTGGAGGTTCTCTATCTCTCACCAGTAGAATAATTCAATTTTATGCCTATTTTGCGGTTTACTG
23282 GGCCATAATGAGCTTGAAGCTA
829 GGCCATAATGAGCTTGAAGCTA
* *
23304 GGTAGTTTCTCTCCTGAAATTTAAGAAGTTCAAATGCTTTCAGAAACTCAAGTGGATGAAAACCA
1 GGTAGTTTCTATCCTCAAATTTAAGAAGTTCAAATGCTTTCAGAAACTCAAGTGGATGAAAACCA
23369 GCTATCTAATGTTGCTTAAGCATCTTGCAAGAAAAATTCAATACATGGTAAGCCTAAGCCAGCAT
66 GCTATCTAATGTTGCTTAAGCATCTTGCAAGAAAAATTCAATA-AT-G---G--TAAGCCAGCAT
* *
23434 ATGCTAGCTCTGTTAAGTTAAAAAGATAACAAGGAATTCTTGAATAATTCTTGCCACTTGGGAGT
124 ATGCTAGCTCTGTTAAGTCAAAAAGATAACAAGGAATTCCTGAATAATTCTTGCCACTTGGGAGT
** * * * *
23499 TTTCTTTAATGCTAAATATTTAAAGTTTTATTAAGTTAAATGCAAACTGTTTGTTTGCCTTGATT
189 TTTCTTTAATGCTAAATATTTAAAGTTGGACTAAGTTAAATCCAAACAGTTTGTTTACCTT--TT
23564 TTCTT-TT-A-AAATTAGGAATAATCAAGTAAAATATTGTATCTAAATTGTGGTTTAAGAGT-TT
252 TTCTTATTAATAAATTAGGAATAATCAAGTAAAATATTGTATCTAAATTGTGGTTTAAGAGTCTT
* *
23625 TTGGTTACTTCTTGCAAGTTCATACAGATATGGAATAGGTGCAAGTTATTGCAGCCATAGATGCC
317 TTGATTACTTCTTGC-AG--------G---T-GAATA----CAAATTATTGCAGCCATAGATGCC
**
23690 TGCATATATTGCATCTTGTCTCTCAATGTGGGGTTAGTATTGCATTTCTTCACATGCGTTCAGCT
365 TGCATATATTGCATCTCATCTCTCAATGTGGGGTTAGTATTGCATTTCTTCACATGCGTTCAGCT
* *
23755 TCACTCAGACGTGGAACATGGGATCTTACGTAG-TT-CATA-T-T-AAGTCTATGTAAGTGCCTC
430 TCACTCAGACCTGGAACATGGGATCTTACATAGTTTACATAGTATCAAGTCTATGTAAGTGCCTC
* *
23815 ATGGCATCTTTATATGATTCTTGATATGAAGTGACTTCCTGAAATGGTTCCTTGACAATCTAAAT
495 ATGACATCTTTATATGATTCTTGATATCAAGTGACTTCCTGAAATGGTTCCTTGACAATCTAAAT
*
23880 GCATCATTCTGCTGCCCTTTACAGTATTTTGTGGAACAATTCTTTTACTGGAATCATCACCAAAG
560 GCATCATTCTGCTGCCCTTTACAGTATTTTGTGGAACAATTATTTTACTGGAATCATCACCAAAG
* *
23945 GGATCACTGAGATCAAGGAATTGGAGGTGTTGGATTTGGGATATAAGAATTGCAGTAGACCTCTT
625 GGATCACTGAGATCAAGGAATTGGAGGGGTTGGACTTGGGATATAAGAATTGCAGTAGACCTCTT
*
24010 CCCCCTGAACTTGGCAGAAATCTGTCACTAACGATCTTGTAAGTCAATATTGTTAAAAAGTTTGG
690 CCCCCTGAACTTGGCAGAAATCTGTCACTAACGATCTTGTAAGTCAATATTGTCAAAAAGTTTGG
* *
24075 TTCTCAGACTCTGGAGGTTCTCTATCTCTCATCAGTAGAATAATTTAATTTTATG
755 TTCTCAGACTCTGGAGGTTCTCTATCTCTCACCAGTAGAATAATTCAATTTTATG
24130 AACTTCAAAT
Statistics
Matches: 753, Mismatches: 47, Indels: 52
0.88 0.06 0.06
Matches are distributed among these distances:
859 16 0.02
860 51 0.07
862 1 0.00
864 2 0.00
867 419 0.56
868 4 0.01
869 1 0.00
871 1 0.00
872 6 0.01
874 129 0.17
875 2 0.00
876 121 0.16
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (850 bp):
GGTAGTTTCTATCCTCAAATTTAAGAAGTTCAAATGCTTTCAGAAACTCAAGTGGATGAAAACCA
GCTATCTAATGTTGCTTAAGCATCTTGCAAGAAAAATTCAATAATGGTAAGCCAGCATATGCTAG
CTCTGTTAAGTCAAAAAGATAACAAGGAATTCCTGAATAATTCTTGCCACTTGGGAGTTTTCTTT
AATGCTAAATATTTAAAGTTGGACTAAGTTAAATCCAAACAGTTTGTTTACCTTTTTTCTTATTA
ATAAATTAGGAATAATCAAGTAAAATATTGTATCTAAATTGTGGTTTAAGAGTCTTTTGATTACT
TCTTGCAGGTGAATACAAATTATTGCAGCCATAGATGCCTGCATATATTGCATCTCATCTCTCAA
TGTGGGGTTAGTATTGCATTTCTTCACATGCGTTCAGCTTCACTCAGACCTGGAACATGGGATCT
TACATAGTTTACATAGTATCAAGTCTATGTAAGTGCCTCATGACATCTTTATATGATTCTTGATA
TCAAGTGACTTCCTGAAATGGTTCCTTGACAATCTAAATGCATCATTCTGCTGCCCTTTACAGTA
TTTTGTGGAACAATTATTTTACTGGAATCATCACCAAAGGGATCACTGAGATCAAGGAATTGGAG
GGGTTGGACTTGGGATATAAGAATTGCAGTAGACCTCTTCCCCCTGAACTTGGCAGAAATCTGTC
ACTAACGATCTTGTAAGTCAATATTGTCAAAAAGTTTGGTTCTCAGACTCTGGAGGTTCTCTATC
TCTCACCAGTAGAATAATTCAATTTTATGCCTATTTTGCGGTTTACTGGGCCATAATGAGCTTGA
AGCTA
Found at i:25386 original size:41 final size:39
Alignment explanation
Indices: 25294--25434 Score: 203
Period size: 40 Copynumber: 3.6 Consensus size: 39
25284 ATCTTCCGTT
*
25294 GTGTGTGTGGGGAGCATCACTGCCGAGAGTCGCGTCTGC
1 GTGTGTGTGGGGAGCATCACTGCTGAGAGTCGCGTCTGC
* *
25333 GTTGTGTGTGGGGAGCATCACTTCTGAGAGTTTGCGTCTGC
1 G-TGTGTGTGGGGAGCATCACTGCTGAGAG-TCGCGTCTGC
* *
25374 GATGTATTTGGGGAGCATCACTGCTGAGAGTCGCGTCTGC
1 G-TGTGTGTGGGGAGCATCACTGCTGAGAGTCGCGTCTGC
25414 GT-TGTGTGGGGAGCATCACTG
1 GTGTGTGTGGGGAGCATCACTG
25435 TCGAGAGCCG
Statistics
Matches: 90, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
38 17 0.19
39 2 0.02
40 36 0.40
41 35 0.39
ACGTcount: A:0.14, C:0.19, G:0.38, T:0.28
Consensus pattern (39 bp):
GTGTGTGTGGGGAGCATCACTGCTGAGAGTCGCGTCTGC
Found at i:25626 original size:40 final size:40
Alignment explanation
Indices: 25519--25665 Score: 224
Period size: 40 Copynumber: 3.7 Consensus size: 40
25509 TCTTCCGTTG
** * *
25519 TGTGTGTGGGGAGCATCACTGCCGAGAGTCACGTTTGCGA
1 TGTGTGTGGGGAGCATCACTGCCGAGAGTCGTGTCTGCGT
*
25559 TGTGTGT-GGGAGCATCACTACCGAGAGTCGTGTCTGCGT
1 TGTGTGTGGGGAGCATCACTGCCGAGAGTCGTGTCTGCGT
*
25598 TGTGTGTGGGGAGCATCACTGCCAAGAGTCGTGTCTGCGT
1 TGTGTGTGGGGAGCATCACTGCCGAGAGTCGTGTCTGCGT
*
25638 TGCGTGTGGGGAGCATCACTGCCGAGAG
1 TGTGTGTGGGGAGCATCACTGCCGAGAG
25666 CCGTTTGATA
Statistics
Matches: 97, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 34 0.35
40 63 0.65
ACGTcount: A:0.16, C:0.20, G:0.38, T:0.25
Consensus pattern (40 bp):
TGTGTGTGGGGAGCATCACTGCCGAGAGTCGTGTCTGCGT
Found at i:25647 original size:79 final size:80
Alignment explanation
Indices: 25519--25665 Score: 224
Period size: 79 Copynumber: 1.9 Consensus size: 80
25509 TCTTCCGTTG
* * *
25519 TGTGTGTGGGGAGCATCACTGCCGAGAGTCACGTTTGCGATGTGTGT-GGGAGCATCACTACCGA
1 TGTGTGTGGGGAGCATCACTGCCAAGAGTCACGTCTGCGATGCGTGTGGGGAGCATCACTACCGA
25583 GAGTCGTGTCTGCGT
66 GAGTCGTGTCTGCGT
** * *
25598 TGTGTGTGGGGAGCATCACTGCCAAGAGTCGTGTCTGCGTTGCGTGTGGGGAGCATCACTGCCGA
1 TGTGTGTGGGGAGCATCACTGCCAAGAGTCACGTCTGCGATGCGTGTGGGGAGCATCACTACCGA
25663 GAG
66 GAG
25666 CCGTTTGATA
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
79 41 0.68
80 19 0.32
ACGTcount: A:0.16, C:0.20, G:0.38, T:0.25
Consensus pattern (80 bp):
TGTGTGTGGGGAGCATCACTGCCAAGAGTCACGTCTGCGATGCGTGTGGGGAGCATCACTACCGA
GAGTCGTGTCTGCGT
Found at i:25669 original size:224 final size:223
Alignment explanation
Indices: 25279--25810 Score: 841
Period size: 224 Copynumber: 2.4 Consensus size: 223
25269 TATAATTTTA
25279 TAATAATCTTCCGTTGTGTGTGTGGGGAGCATCACTGCCGAGAGTCGCGTCTGCGTTGTGTGTGG
1 TAATAATCTTCCGTTGTGTGTGTGGGGAGCATCACTGCCGAGAGTCGCGTCTGCGTTGTGTGT-G
* * * **
25344 GGAGCATCACTTCTGAGAGTTTGCGTCTGCGATGTATTTGGGGAGCATCACTGCTGAGAGTCGCG
65 GGAGCATCACTTCCGAGAGTTCGCGTCTGCGATGTATGTGGGGAGCATCACTGCCAAGAGTCGCG
* * *
25409 TCTGCGTTGTGTGGGGAGCATCACTGTCGAGAGCCGTTTAATAAAATTATAATTTAAAATATAAT
130 TCTGCGTTGTGTGGGGAGCATCACTGCCGAGAGCCGTTTAATAAAATTATAATCTAAAATACAAT
25474 AACTTTATAACTTGATAATATAGTAACCC
195 AACTTTATAACTTGATAATATAGTAACCC
* * *
25503 TAATAATCTTCCGTTGTGTGTGTGGGGAGCATCACTGCCGAGAGTCACGTTTGCGATGTGTGTGG
1 TAATAATCTTCCGTTGTGTGTGTGGGGAGCATCACTGCCGAGAGTCGCGTCTGCGTTGTGTGTGG
* * * * *
25568 GAGCATCACTACCGAGAG-TCGTGTCTGCGTTGTGTGTGGGGAGCATCACTGCCAAGAGTCGTGT
66 GAGCATCACTTCCGAGAGTTCGCGTCTGCGATGTATGTGGGGAGCATCACTGCCAAGAGTCGCGT
* *
25632 CTGCGTTGCGTGTGGGGAGCATCACTGCCGAGAGCCGTTTGATAAAATTATAATCTAAAATACAG
131 CTGCGTT--GTGTGGGGAGCATCACTGCCGAGAGCCGTTTAATAAAATTATAATCTAAAATACAA
25697 TAACTTTATAACTTGATAATATAGTAACCC
194 TAACTTTATAACTTGATAATATAGTAACCC
* *
25727 TAATAATCTTCCGTTGTGTGTGTGGGGAGCATCACTGCCGAGAGTCGCATCTGCGTTGTGTGCGG
1 TAATAATCTTCCGTTGTGTGTGTGGGGAGCATCACTGCCGAGAGTCGCGTCTGCGTTGTGTG-TG
25792 GGAGCATCACTTCCGAGAG
65 GGAGCATCACTTCCGAGAG
25811 CCGTTTAATA
Statistics
Matches: 281, Mismatches: 24, Indels: 5
0.91 0.08 0.02
Matches are distributed among these distances:
222 45 0.16
223 18 0.06
224 199 0.71
225 19 0.07
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (223 bp):
TAATAATCTTCCGTTGTGTGTGTGGGGAGCATCACTGCCGAGAGTCGCGTCTGCGTTGTGTGTGG
GAGCATCACTTCCGAGAGTTCGCGTCTGCGATGTATGTGGGGAGCATCACTGCCAAGAGTCGCGT
CTGCGTTGTGTGGGGAGCATCACTGCCGAGAGCCGTTTAATAAAATTATAATCTAAAATACAATA
ACTTTATAACTTGATAATATAGTAACCC
Found at i:25892 original size:145 final size:143
Alignment explanation
Indices: 25595--25972 Score: 517
Period size: 145 Copynumber: 2.6 Consensus size: 143
25585 GTCGTGTCTG
* *
25595 CGTTGTGTGTGGGGAGCATCACTGCCAAGAGTCGTGTCTGCGTTGCGTGTGGGGAGCATCACTGC
1 CGTTGTGTGTGGGGAGCATCACTGCCGAGAGTCGTGTCTGCGTTGTGTGTGGGGAGCATCACTGC
* * * *
25660 CGAGAGCCGTTTGATAAAATTATAATCTAAAATACAGTAACTTTATAACTTGATAATATAGTAAC
66 CGAGAGCCGTTTAATAAAATTACAATCTAAAATACAATAACTTTATAACTTGATAATATAATAAC
*
25725 CCTAATAATCTTC
131 CATAATAATCTTC
** *
25738 CGTTGTGTGTGTGGGGAGCATCACTGCCGAGAGTCGCATCTGCGTTGTGTGCGGGGAGCATCACT
1 CG-T-TGTGTGTGGGGAGCATCACTGCCGAGAGTCGTGTCTGCGTTGTGTGTGGGGAGCATCACT
* * * *
25803 TCCGAGAGCCGTTTAATAAAATTACAATTTAAAATATAATAATAACTTTTTAACTTGATAATATA
64 GCCGAGAGCCGTTTAATAAAATTACAATCT-AAA-AT-ACAATAACTTTATAACTTGATAATATA
25868 ATAA-CATAATAATCTTC
126 ATAACCATAATAATCTTC
* * *
25885 CGTTGTGTGTGCGGGGAGCATCACTGCCGAGAGTCGTGTCTGCGATGTATTTGGGGAGCATCACT
1 CGTTGTGTGT--GGGGAGCATCACTGCCGAGAGTCGTGTCTGCGTTGTGTGTGGGGAGCATCACT
*
25950 GGCGAGAGCCGTTTAA-AAAATTA
64 GCCGAGAGCCGTTTAATAAAATTA
25973 TTATAATTTA
Statistics
Matches: 206, Mismatches: 22, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
143 2 0.01
144 1 0.00
145 88 0.43
146 11 0.05
147 77 0.37
148 27 0.13
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (143 bp):
CGTTGTGTGTGGGGAGCATCACTGCCGAGAGTCGTGTCTGCGTTGTGTGTGGGGAGCATCACTGC
CGAGAGCCGTTTAATAAAATTACAATCTAAAATACAATAACTTTATAACTTGATAATATAATAAC
CATAATAATCTTC
Found at i:25941 original size:147 final size:144
Alignment explanation
Indices: 25595--25972 Score: 528
Period size: 147 Copynumber: 2.6 Consensus size: 144
25585 GTCGTGTCTG
* *
25595 CGTTGTGTGT-GGGGAGCATCACTGCCAAGAGTCGTGTCTGCGTTGCGTGTGGGGAGCATCACTG
1 CGTTGTGTGTGGGGGAGCATCACTGCCGAGAGTCGTGTCTGCGTTGTGTGTGGGGAGCATCACTG
* * * *
25659 CCGAGAGCCGTTTGATAAAATTATAATCTAAAATACAGTAACTTTATAACTTGATAATATAGTAA
66 CCGAGAGCCGTTTAATAAAATTACAATCTAAAATACAATAACTTTATAACTTGATAATATAATAA
*
25724 CCCTAATAATCTTC
131 CCATAATAATCTTC
** *
25738 CGTTGTGTGTGTGGGGAGCATCACTGCCGAGAGTCGCATCTGCGTTGTGTGCGGGGAGCATCACT
1 CGTTGTGTGTG-GGGGAGCATCACTGCCGAGAGTCGTGTCTGCGTTGTGTGTGGGGAGCATCACT
* * * *
25803 TCCGAGAGCCGTTTAATAAAATTACAATTTAAAATATAATAATAACTTTTTAACTTGATAATATA
65 GCCGAGAGCCGTTTAATAAAATTACAATCT-AAA-AT-ACAATAACTTTATAACTTGATAATATA
25868 ATAA-CATAATAATCTTC
127 ATAACCATAATAATCTTC
* * *
25885 CGTTGTGTGTGCGGGGAGCATCACTGCCGAGAGTCGTGTCTGCGATGTATTTGGGGAGCATCACT
1 CGTTGTGTGTG-GGGGAGCATCACTGCCGAGAGTCGTGTCTGCGTTGTGTGTGGGGAGCATCACT
*
25950 GGCGAGAGCCGTTTAA-AAAATTA
65 GCCGAGAGCCGTTTAATAAAATTA
25973 TTATAATTTA
Statistics
Matches: 207, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
143 10 0.05
145 74 0.36
146 10 0.05
147 86 0.42
148 27 0.13
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (144 bp):
CGTTGTGTGTGGGGGAGCATCACTGCCGAGAGTCGTGTCTGCGTTGTGTGTGGGGAGCATCACTG
CCGAGAGCCGTTTAATAAAATTACAATCTAAAATACAATAACTTTATAACTTGATAATATAATAA
CCATAATAATCTTC
Found at i:26005 original size:147 final size:143
Alignment explanation
Indices: 25595--26021 Score: 472
Period size: 147 Copynumber: 2.9 Consensus size: 143
25585 GTCGTGTCTG
* *
25595 CGTTGTGTGT-GGGGAGCATCACTGCCAAGAGTCGTGTCTGCGTTGCGTGTGGGGAGCATCACTG
1 CGTTGTGTGTGGGGGAGCATCACTGCCGAGAGTCGTGTCTGCGTTGTGTGTGGGGAGCATCACTG
* * * * *
25659 CCGAGAGCCGTTTGATAAAATTATAATCTAA---AATACAGTAACTTTATAACTTGATAATATAG
66 CCGAGAGCCGTTTAATAAAATTATAATTTAATTTAAAAC-TTAA--TTATAACTTGATAATATAA
*
25721 TAACCCTAATAATCTTC
128 TAA-CATAATAATCTTC
** *
25738 CGTTGTGTGTGTGGGGAGCATCACTGCCGAGAGTCGCATCTGCGTTGTGTGCGGGGAGCATCACT
1 CGTTGTGTGTG-GGGGAGCATCACTGCCGAGAGTCGTGTCTGCGTTGTGTGTGGGGAGCATCACT
* *
25803 TCCGAGAGCCGTTTAATAAAATTACAATTTAAAATATAATAATAACTT--TT-TAACTTGATAAT
65 GCCGAGAGCCGTTTAATAAAATTATAATTT--AAT-T--TAA-AACTTAATTATAACTTGATAAT
25865 ATAATAACATAATAATCTTC
124 ATAATAACATAATAATCTTC
* * *
25885 CGTTGTGTGTGCGGGGAGCATCACTGCCGAGAGTCGTGTCTGCGATGTATTTGGGGAGCATCACT
1 CGTTGTGTGTG-GGGGAGCATCACTGCCGAGAGTCGTGTCTGCGTTGTGTGTGGGGAGCATCACT
* * * *
25950 GGCGAGAGCCGTTTAAAAAATTATTATAATTTAACTTTAAAACTTAATTACAACTTGTAAAATTA
65 GCCGAGAGCCGTTTAATAAA--ATTATAATTTAA-TTTAAAACTTAATTATAACTTG-ATAA-TA
26015 TAATAAC
125 TAATAAC
26022 TTTATAACTT
Statistics
Matches: 239, Mismatches: 26, Indels: 32
0.80 0.09 0.11
Matches are distributed among these distances:
143 10 0.04
144 5 0.02
145 77 0.32
146 2 0.01
147 98 0.41
148 22 0.09
149 20 0.08
153 3 0.01
154 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (143 bp):
CGTTGTGTGTGGGGGAGCATCACTGCCGAGAGTCGTGTCTGCGTTGTGTGTGGGGAGCATCACTG
CCGAGAGCCGTTTAATAAAATTATAATTTAATTTAAAACTTAATTATAACTTGATAATATAATAA
CATAATAATCTTC
Found at i:29339 original size:34 final size:34
Alignment explanation
Indices: 29296--29361 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
29286 AATAGTAGAT
29296 CCCAAATTTCTTGAGACACATGTAAACGATGAAA
1 CCCAAATTTCTTGAGACACATGTAAACGATGAAA
*
29330 CCCAAATTTCTTGAGACCCATGTAAACGATGA
1 CCCAAATTTCTTGAGACACATGTAAACGATGA
29362 GATTATAGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.24
Consensus pattern (34 bp):
CCCAAATTTCTTGAGACACATGTAAACGATGAAA
Found at i:32510 original size:332 final size:332
Alignment explanation
Indices: 29738--34139 Score: 6130
Period size: 331 Copynumber: 13.3 Consensus size: 332
29728 CCAGCCCTAC
* *
29738 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCATGCTTCTAATATCGCTTTTCTTTTTATTTTCTT
1 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTT-TTTTCTT
*
29803 AATTATTTTCTAAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATCCAT
65 AATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAT
* *
29868 CATTGCTGAGA--TGGCTAGATGAAAATAAATATTTCAAGGAGTCTTGGCGTC-AAAATCATGCA
130 CATTGCTGAGATTTGGTTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCA
* * *
29930 AAACTTAGTCGAGCCTCCAGAACGCGTTTTTAGCCTAAAACCGT-A-----ACGTACATGATTTC
195 AAACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTA-GTACACGATTTC
* * *
29989 GGCTAAAATTTTGTAAAAATTGACCCGAAAGATTTTTCCACAATTTTCTCCCAGAATACTCATAA
259 GGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCAGAATACTCATAA
*
30054 AAATATATC
324 AAATATATA
*
30063 ATTCAATGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTTCCTT
1 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTT-CTT
* *
30128 AGTTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAAAAATCCTTAAATCCAT
65 AATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAT
* * *
30193 CGTTGCTGAGATTTGGCTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTGAAAAATCATGCA
130 CATTGCTGAGATTTGGTTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCA
* * *
30258 AAACTTAGTCGGGCCACCAGAACGCGTTTTTACCCTAAAACCGTGATGGTTAGTACACGATTCCG
195 AAACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCG
* *
30323 ACTAAAATTTTGCAAAAATTGACCCTAAAGATTTTTCCTCAATTTTTTCCCAGAATACTCATGAA
260 GCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCAGAATACTCAT-AA
30388 AAATATATA
324 AAATATATA
** *
30397 ATTCAACGCCAAAATTATTGGACGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTTCTTA
1 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTTCTTA
* * *
30462 ATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAACCAAATCCTTAAGTCAATC
66 ATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATC
* * *
30527 ATTGCTGAGATTTGGTTAGATCAAAATAGATATTCCAAGGAGTCTTGGCG-CAAAAAATAATGCA
131 ATTGCTGAGATTTGGTTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTC-AAAAATCATGCA
* * ** *
30591 AAACATAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGAT-TTTCTTAGTACACGATTTT
195 AAACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCG-TGATGGTTAGTACACGATTTC
* * * * *
30655 GGATAAAATTTTACAAAGATTGACCCGAAAGATTTTTCCTCATTTTTTTTCCCAGAATTCTCATA
259 GGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCA-ATTTTTTCCCAGAATACTCATA
30720 AAAATATATA
323 AAAATATATA
*
30730 ATTCAACGCCAAAAAGATT------C--TTCACGCTTCTAATATCG----T-TTTTTTTTTCTGA
1 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTTCTTA
* * *
30782 ATTAATTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCCTAAATCCAAC
66 ATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATC
* * * * * * * *
30847 GTTGCT-AAACTTTTGTTAAATGAATATGGATATTTTAATGAGTCTTGGCGTCAAATAA-CATGC
131 ATTGCTGAGA-TTTGGTTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAA-AATCATGC
* * * * * * *
30910 AAAACTGATTCATGG-C-CCAGGAACGCGTTTTTAGCCAAAAATCGTGAGGGTTAGTCCACGATT
194 AAAACTTAGTC-GGGCCGCCA-GAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGA-T
* * *
30973 TTC-GCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCAC-ATTTTTTAGCCACAATACTC
256 TTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTT-CCCAGAATACTC
31036 ATAAAAA-ATATA
320 ATAAAAATATATA
* * * * * ** *
31048 TATT-AACGCCAGAACGATTGGAGTGCTTTTCACCCTTCTAGTATCGTTTTTTCAATTTTTTTCC
1 -ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCG-TTTTTCTTTTTTTTTCT
* * * * *
31112 GAATTAATTTCT-AATAAAATCGAAACAATATTCAGATTCTCGTAAAAACAAATCCTTAAAT--A
64 TAATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCA
** * ** * * * *
31174 AAATAT--TGAGATTTTGTTAGATGATTATAGGTACTTCAAGGAGTCTTGGCGCCGAAAATCATG
129 TCAT-TGCTGAGATTTGGTTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATG
* * * * *
31237 CAAAACTTAGTCGGCCCGCCGGAACGCGTTTTTAGGCTAAATCTGTGATGGTTAGTACACGATTT
193 CAAAACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTT
*
31302 CGGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTCACAGAATACTCATA
258 CGGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCAGAATACTCATA
31367 AAAATATATA
323 AAAATATATA
* * * **
31377 ATTCAACGGCAAAAAGATTGGAGGGCTTTTCA-GGTTACTAAAATCG--TTT-TTTTTTTTTCAG
1 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTT-CTAATATCGTTTTTCTTTTTTTTTCTT
31438 AATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAT
65 AATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAT
* * * *
31503 CATTGCTGAGATTTGGTTAGATGAAAATAGATATTCCAAGGCGTCTCGGCGCCAAAAATCATGCA
130 CATTGCTGAGATTTGGTTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCA
* * * *
31568 AAACTTAGTCGGGCCGCCATAACGTGTTTTTAGCCTAAAATCGTGATGGTTAGTATACGATTTCG
195 AAACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCG
* *
31633 GCTAAAATTTTGCAAACATTGACTCGAAA-AGTTTTTCCTCAATTTTTTCCCAGAATACTCATAA
260 GCTAAAATTTTGCAAAAATTGACCCGAAAGA-TTTTTCCTCAATTTTTTCCCAGAATACTCATAA
31697 AAATATATA
324 AAATATATA
* * *
31706 ATTAAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTC-TTTTTTTGCTGA
1 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTTCTTA
* * *
31770 ATTATTTTCTAAATTAAATTGAAACAAGATTCAGATTCTCGTAAAAACAAATCTTTAAATCCATC
66 ATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATC
* * * * *
31835 ATTGCTAAGATTTGGCTAGATGAAAATACATATTTCAAGGAGTCTCGGCGTCAAACATCATGCAA
131 ATTGCTGAGATTTGGTTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAA
* * * *
31900 AACTTAGTCGAGCCGTCGGAACGCGTTTTTAGCCTAAAACCGTGATTGTTAGTACACGATTTCGG
196 AACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCGG
* * * *
31965 CT-AAACTATGCAAAGATTGACCCGAAAGATTTTCCCTCAA-TTTTTCCCAGAATACTCATAAAA
261 CTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCAGAATACTCATAAAA
*
32028 ATATATG
326 ATATATA
* **
32035 ATTCAACGCCAAAAAGATTGGGGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTTCCGA
1 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTTCTTA
*
32100 ATTATTTTCTAAATTAAATCGAAACAAGATTAAGATGCTCGTAAAAACAAATCCTTAAATCCATC
66 ATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATC
* * * *
32165 ATTGCTAAGATTTGGCTATATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAGATCATGCAA
131 ATTGCTGAGATTTGGTTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAA
* *
32230 AACTTAGTCGGGCCGCCAGAACGCGTTTTTAGGCTAAAACCGTGATGGTTAGTACACGATTTCGA
196 AACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCGG
* *
32295 CTAAAATTTTGCAAAAATTGACACGAAAGATTTTTCCTCAA-TTTTTCCCATAATACTCATAAAA
261 CTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCAGAATACTCAT-AAA
32359 AATATATA
325 AATATATA
* * * *
32367 ATTCAACGGCAAAAAGATTGGAAGGCTTTTCACGCTTCTAATATTGTTTTTCTTTTTTTTTCTCA
1 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTTCTTA
* *
32432 ATTAATTTCTAAATTAAATTGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATC
66 ATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATC
* * * *
32497 ATTGCTGAGATTTGGTTAGATGAAAATAGATATTCCAAGGAGTCTCGGCGCCAAAAATCATGGAA
131 ATTGCTGAGATTTGGTTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAA
* * * *
32562 AACTTAGTCGGGCTGCCAGAACGGGTTTTTACCCTAAAACCGTGATGGTTAGTATACGATTTCGG
196 AACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCGG
*
32627 CTAAAATTTTGCAAAGATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCAGAATACTCATAAAA
261 CTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCAGAATACTCATAAAA
*
32692 ATATATC
326 ATATATA
* *
32699 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCATCTAATATCGTTTTTC-TTTTTTTCCTTA
1 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTTCTTA
*
32763 ATTATTTTCTAATTTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATC
66 ATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATC
* *
32828 ATTGCTGAGATTTGGCTAGATGAAAATAGATACTTCAAGGAGTCTTGGCGTCAAAAATCATGCAA
131 ATTGCTGAGATTTGGTTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAA
* *
32893 AACTTAGTCGGGCCTCCAAAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCGG
196 AACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCGG
* * * *
32958 CTAAAATTATGCAAAGATTGACCCGAAAGATTTTTCATCAATTTTTTCCCAAAATACTCATAAAG
261 CTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCAGAATACTCATAAA-
33023 ATATATATA
325 A-ATATATA
* *
33032 ATTCAACGCCAAAAATATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTCCTTA
1 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTTCTTA
33097 ATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATC
66 ATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATC
*
33162 ATTGCTGAGATTTGGCTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAA
131 ATTGCTGAGATTTGGTTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAA
** *
33227 AACTTAGTCGGGCCGCTGGAACGCGTTTTTAGCCTAAAACCGTGATCGTTAGTACACGATTTCGG
196 AACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCGG
* *
33292 CTAAAATTTTGCAAAGATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCAGAATAGTCATAAAA
261 CTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCAGAATACTCATAAAA
33357 ATATATA
326 ATATATA
* *
33364 ATTCAACGCCAGAAAGATTGGAGGGCTTTTCACTCTTCTAATATCGTTTTTCTTTTTTTTTCTTA
1 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTTCTTA
*
33429 ATTATTTTCTAAATTAAATCGAAACAAGACTCAGATGCTCGTAAAAACAAATCCTTAAATCCATC
66 ATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATC
* * * * * *
33494 ACTGCTGATATTTGGTTAGATGAAAATAGATATTCCAAGGAGTCTTGGCGTCTAAAATCACGGAA
131 ATTGCTGAGATTTGGTTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAA
* *
33559 AACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTTAAACCGTGATGGTTA-TACACGATTTCGA
196 AACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCGG
* * *
33623 CTAAAATTGTGCAAAAATTGACTCGAAAGATTTTTCCTCAATTTTTTCCTAGAATACTCATAAAA
261 CTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCAGAATACTCATAAAA
33688 ATATATA
326 ATATATA
* *
33695 ATTCAATGCCAAAAAGGTTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTC-TTTTTTTTCTTG
1 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTTCTT-
* * *
33759 AATTAATTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAATCAAATCCTTAAATCCAA
65 AATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAT
* * * * * * *
33824 CGTTGCCGAGCTTTTGTTAGATGAATATGGATATTTCAATGAGTCTTGGCGTCAAATAA-CATGC
130 CATTGCTGAGATTTGGTTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAA-AATCATGC
* * * * *
33888 AAAACTGAGTCATGG-C-CCAGGAACGTGTTTTTAGCCAAAAATCGTGATGGTTAGTACACGATT
194 AAAACTTAGTC-GGGCCGCCA-GAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGA-T
* * ** * *
33951 TTC-GTTAAAATTGTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAGCTACAATACTCA
256 TTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCAGAATACTCA
34015 TAAAAAATATATA
321 T-AAAAATATATA
* * *
34028 TAGT-AATG-CAAAAACGATTGGAGGGCTTTTCACGCTTCTAGTATCGTTTTTCGATTTTTTTTT
1 -ATTCAACGCCAAAAA-GATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTC--TTTTTTTTT
** * * *
34091 CCGAATTAATTTT-T-GA-TAAATCGTAAACAATATTCAGATTCTCGTAAAA
62 CTTAATT-ATTTTCTAAATTAAATCG-AAACAAGATTCAGATGCTCGTAAAA
Statistics
Matches: 3647, Mismatches: 351, Indels: 149
0.88 0.08 0.04
Matches are distributed among these distances:
318 24 0.01
319 25 0.01
320 192 0.05
321 9 0.00
324 5 0.00
325 166 0.05
326 65 0.02
327 47 0.01
328 202 0.06
329 342 0.09
330 242 0.07
331 817 0.22
332 675 0.19
333 444 0.12
334 374 0.10
335 5 0.00
336 13 0.00
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (332 bp):
ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTTCTTA
ATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATC
ATTGCTGAGATTTGGTTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAA
AACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCGG
CTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCAGAATACTCATAAAA
ATATATA
Found at i:33529 original size:997 final size:996
Alignment explanation
Indices: 29738--34139 Score: 6249
Period size: 997 Copynumber: 4.4 Consensus size: 996
29728 CCAGCCCTAC
* *
29738 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCATGCTTCTAATATCGCTTTTCTTTTTATTTTCTT
1 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTC-TTTT-TTTTCTT
*
29803 AATTATTTTCTAAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATCCAT
64 AATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAT
*
29868 CATTGCTGAGA--TGGCTAGATGAAAATAAATATTTCAAGGAGTCTTGGCGTC-AAAATCATGCA
129 CATTGCTGAGATTTGGCTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCA
* *
29930 AAACTTAGTCGAGCCTCCAGAACGCGTTTTTAGCCTAAAACCGT-A-----ACGTACATGATTTC
194 AAACTTAGTCGGGCCTCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTA-GTACACGATTTC
* * * *
29989 GGCTAAAATTTTGTAAAAATTGACCCGAAAGATTTTTCCA-CAATTTTCTCCCAGAATACTCATA
258 GGCTAAAATTATGCAAAAATTGACCCGAAAGATTTTT-CATCAATTTTTTCCCACAATACTCATA
* *
30053 AAAATATATCATTCAATGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTT
322 AAAATATATAATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTT
* * *
30118 TTTTTTCCTTAGTTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAAAAATCC
387 TTTTTTCC-GAATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCC
* *
30183 TTAAATCCATCGTTGCTGAGATTTGGCTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTGAA
451 TTAAATCCATCATTGCTGAGATTTGGCTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAA
* *
30248 AAATCATGCAAAACTTAGTCGGGCCACCAGAACGCGTTTTTACCCTAAAACCGTGATGGTTAGTA
516 AAATCATGCAAAACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTA
* *
30313 CACGATTCCGACTAAAATTTTGCAAAAATTGACCCTAAAGATTTTTCCTCAATTTTTTCCCAGAA
581 CACGATTTCGACTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCAGAA
* ** *
30378 TACTCATGAAAAATATATAATTCAACGCCAAAATTATTGGACGGCTTTTCACGCTTCTAATATCG
646 TACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCG
30443 TTTTTCTTTTTTTTTCTTAATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAA
711 TTTTTCTTTTTTTTTCTTAATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAA
* * * * *
30508 CCAAATCCTTAAGTCAATCATTGCTGAGATTTGGTTAGATCAAAATAGATATTCCAAGGAGTCTT
776 ACAAATCCTTAAATCCATCATTGCTGAGATTTGGTTAGATGAAAATAGATATTCCAAGGAGTCTC
* * * *
30573 GGCGCAAAAAATAATGCAAAACATAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGAT-T
841 GGCGCCAAAAATCATGCAAAACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCG-TGA
** * * * *
30637 TTCTTAGTACACGATTTTGGATAAAATTTTACAAAGATTGACCCGAAAGATTTTTCCTCATTTTT
905 TGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAGATTGACCCGAAAGATTTTTCCTCA-ATTT
*
30702 TTTCCCAGAATTCTCATAAAAATATATA
969 TTTCCCAGAATACTCATAAAAATATATA
*
30730 ATTCAACGCCAAAAAGATT------C--TTCACGCTTCTAATATCG---TT-TTTTTTTTCTGAA
1 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTCTTAA
* * * *
30783 TTAATTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCCTAAATCCAACG
66 TTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATCA
* * * * * * * *
30848 TTGCT-AAACTTTTGTTAAATGAATATGGATATTTTAATGAGTCTTGGCGTCAAATAA-CATGCA
131 TTGCTGAGA-TTTGGCTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAA-AATCATGCA
* * * * * * *
30911 AAACTGATTCATGG-C-CCAGGAACGCGTTTTTAGCCAAAAATCGTGAGGGTTAGTCCACGATTT
194 AAACTTAGTC-GGGCCTCCA-GAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGA-TT
* *
30974 TC-GCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTC--CACATTTTTTAGCCACAATACTC
256 TCGGCTAAAATTATGCAAAAATTGACCCGAAAGATTTTTCATCA-ATTTTTT-CCCACAATACTC
* * * * *
31036 ATAAAAA-ATATATATT-AACGCCAGAACGATTGGAGTGCTTTTCACCCTTCTAGTATCGTTTTT
319 ATAAAAATATATA-ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCG-TTTT
** * * * *
31099 TCAATTTTTTTCCGAATTAATTTCT-AATAAAATCGAAACAATATTCAGATTCTCGTAAAAACAA
382 TCTTTTTTTTTCCGAATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAA
** * * ** * *
31163 ATCCTTAAAT--AAAATAT--TGAGATTTTGTTAGATGATTATAGGTACTTCAAGGAGTCTTGGC
447 ATCCTTAAATCCATCAT-TGCTGAGATTTGGCTAGATGAAAATAGATATTTCAAGGAGTCTTGGC
* * * * * * *
31224 GCCGAAAATCATGCAAAACTTAGTCGGCCCGCCGGAACGCGTTTTTAGGCTAAATCTGTGATGGT
511 GTCAAAAATCATGCAAAACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGT
* *
31289 TAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTCA
576 TAGTACACGATTTCGACTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTCC
* *
31354 CAGAATACTCAT-AAAAATATATAATTCAACGGCAAAAAGATTGGAGGGCTTTTCA-GGTTACTA
641 CAGAATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTT-CTA
* **
31417 AAATCG--TTT-TTTTTTTTTCAGAATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTC
705 ATATCGTTTTTCTTTTTTTTTCTTAATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTC
31479 GTAAAAACAAATCCTTAAATCCATCATTGCTGAGATTTGGTTAGATGAAAATAGATATTCCAAGG
770 GTAAAAACAAATCCTTAAATCCATCATTGCTGAGATTTGGTTAGATGAAAATAGATATTCCAAGG
* * * *
31544 CGTCTCGGCGCCAAAAATCATGCAAAACTTAGTCGGGCCGCCATAACGTGTTTTTAGCCTAAAAT
835 AGTCTCGGCGCCAAAAATCATGCAAAACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAAC
* * *
31609 CGTGATGGTTAGTATACGATTTCGGCTAAAATTTTGCAAACATTGACTCGAAA-AGTTTTTCCTC
900 CGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAGATTGACCCGAAAGA-TTTTTCCTC
31673 AATTTTTTCCCAGAATACTCATAAAAATATATA
964 AATTTTTTCCCAGAATACTCATAAAAATATATA
* * *
31706 ATTAAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTGCTGAA
1 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTCTTAA
* * *
31771 TTATTTTCTAAATTAAATTGAAACAAGATTCAGATTCTCGTAAAAACAAATCTTTAAATCCATCA
66 TTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATCA
* * * *
31836 TTGCTAAGATTTGGCTAGATGAAAATACATATTTCAAGGAGTCTCGGCGTCAAACATCATGCAAA
131 TTGCTGAGATTTGGCTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAAA
* * *
31901 ACTTAGTCGAGCCGT-CGGAACGCGTTTTTAGCCTAAAACCGTGATTGTTAGTACACGATTTCGG
196 ACTTAGTCGGGCC-TCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCGG
* * * * *
31965 CT-AAACTATGCAAAGATTGACCCGAAAGATTTTCCCTCAA-TTTTTCCCAGAATACTCATAAAA
260 CTAAAATTATGCAAAAATTGACCCGAAAGATTTTTCATCAATTTTTTCCCACAATACTCATAAAA
* *
32028 ATATATGATTCAACGCCAAAAAGATTGGGGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTT
325 ATATATAATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTT
*
32093 TTTCCGAATTATTTTCTAAATTAAATCGAAACAAGATTAAGATGCTCGTAAAAACAAATCCTTAA
390 TTTCCGAATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAA
* * *
32158 ATCCATCATTGCTAAGATTTGGCTATATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAGAT
455 ATCCATCATTGCTGAGATTTGGCTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAAT
*
32223 CATGCAAAACTTAGTCGGGCCGCCAGAACGCGTTTTTAGGCTAAAACCGTGATGGTTAGTACACG
520 CATGCAAAACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACG
* *
32288 ATTTCGACTAAAATTTTGCAAAAATTGACACGAAAGATTTTTCCTCAA-TTTTTCCCATAATACT
585 ATTTCGACTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCAGAATACT
* * *
32352 CATAAAAAATATATAATTCAACGGCAAAAAGATTGGAAGGCTTTTCACGCTTCTAATATTGTTTT
650 CATAAAAAATATATAATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTT
* * *
32417 TCTTTTTTTTTCTCAATTAATTTCTAAATTAAATTGAAACAAGATTCAGATGCTCGTAAAAACAA
715 TCTTTTTTTTTCTTAATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAA
32482 ATCCTTAAATCCATCATTGCTGAGATTTGGTTAGATGAAAATAGATATTCCAAGGAGTCTCGGCG
780 ATCCTTAAATCCATCATTGCTGAGATTTGGTTAGATGAAAATAGATATTCCAAGGAGTCTCGGCG
* * * *
32547 CCAAAAATCATGGAAAACTTAGTCGGGCTGCCAGAACGGGTTTTTACCCTAAAACCGTGATGGTT
845 CCAAAAATCATGCAAAACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTT
*
32612 AGTATACGATTTCGGCTAAAATTTTGCAAAGATTGACCCGAAAGATTTTTCCTCAATTTTTTCCC
910 AGTACACGATTTCGGCTAAAATTTTGCAAAGATTGACCCGAAAGATTTTTCCTCAATTTTTTCCC
*
32677 AGAATACTCATAAAAATATATC
975 AGAATACTCATAAAAATATATA
* *
32699 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCATCTAATATCGTTTTTCTTTTTTTCCTTAA
1 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTCTTAA
*
32764 TTATTTTCTAATTTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATCA
66 TTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATCA
*
32829 TTGCTGAGATTTGGCTAGATGAAAATAGATACTTCAAGGAGTCTTGGCGTCAAAAATCATGCAAA
131 TTGCTGAGATTTGGCTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAAA
*
32894 ACTTAGTCGGGCCTCCAAAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCGGC
196 ACTTAGTCGGGCCTCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCGGC
* *
32959 TAAAATTATGCAAAGATTGACCCGAAAGATTTTTCATCAATTTTTTCCCAAAATACTCATAAAGA
261 TAAAATTATGCAAAAATTGACCCGAAAGATTTTTCATCAATTTTTTCCCACAATACTCATAAA-A
*
33024 TATATATAATTCAACGCCAAAAATATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTC-TTTT
325 -ATATATAATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTT
*
33088 TTTTCCTTAATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTT
389 TTTTCC-GAATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTT
33153 AAATCCATCATTGCTGAGATTTGGCTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAA
453 AAATCCATCATTGCTGAGATTTGGCTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAA
** *
33218 ATCATGCAAAACTTAGTCGGGCCGCTGGAACGCGTTTTTAGCCTAAAACCGTGATCGTTAGTACA
518 ATCATGCAAAACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACA
* *
33283 CGATTTCGGCTAAAATTTTGCAAAGATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCAGAATA
583 CGATTTCGACTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCAGAATA
* * *
33348 GTCAT-AAAAATATATAATTCAACGCCAGAAAGATTGGAGGGCTTTTCACTCTTCTAATATCGTT
648 CTCATAAAAAATATATAATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTT
*
33412 TTTCTTTTTTTTTCTTAATTATTTTCTAAATTAAATCGAAACAAGACTCAGATGCTCGTAAAAAC
713 TTTCTTTTTTTTTCTTAATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAC
* * *
33477 AAATCCTTAAATCCATCACTGCTGATATTTGGTTAGATGAAAATAGATATTCCAAGGAGTCTTGG
778 AAATCCTTAAATCCATCATTGCTGAGATTTGGTTAGATGAAAATAGATATTCCAAGGAGTCTCGG
* * * * *
33542 CGTCTAAAATCACGGAAAACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTTAAACCGTGATGG
843 CGCCAAAAATCATGCAAAACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGG
* * * *
33607 TTA-TACACGATTTCGACTAAAATTGTGCAAAAATTGACTCGAAAGATTTTTCCTCAATTTTTTC
908 TTAGTACACGATTTCGGCTAAAATTTTGCAAAGATTGACCCGAAAGATTTTTCCTCAATTTTTTC
*
33671 CTAGAATACTCATAAAAATATATA
973 CCAGAATACTCATAAAAATATATA
* *
33695 ATTCAATGCCAAAAAGGTTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTCTTGA
1 ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTCTT-A
* * *
33760 ATTAATTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAATCAAATCCTTAAATCCAAC
65 ATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATC
* * * * * * * *
33825 GTTGCCGAGCTTTTGTTAGATGAATATGGATATTTCAATGAGTCTTGGCGTCAAATAA-CATGCA
130 ATTGCTGAGATTTGGCTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAA-AATCATGCA
* * * * *
33889 AAACTGAGTCATGG-C-CCAGGAACGTGTTTTTAGCCAAAAATCGTGATGGTTAGTACACGATTT
194 AAACTTAGTC-GGGCCTCCA-GAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGA-TT
* * * ** *
33952 TC-GTTAAAATTGTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAGCTACAATACTCAT
256 TCGGCTAAAATTATGCAAAAATTGACCCGAAAGATTTTTCATCAATTTTTTCCCACAATACTCAT
* * *
34016 AAAAAATATATATAGT-AATG-CAAAAACGATTGGAGGGCTTTTCACGCTTCTAGTATCGTTTTT
321 -AAAAATATATA-ATTCAACGCCAAAAA-GATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTT
* * *
34079 CGATTTTTTTTTCCGAATTAATTTT-T-GA-TAAATCGTAAACAATATTCAGATTCTCGTAAAA
383 C--TTTTTTTTTCCGAATT-ATTTTCTAAATTAAATCG-AAACAAGATTCAGATGCTCGTAAAA
Statistics
Matches: 3045, Mismatches: 290, Indels: 145
0.88 0.08 0.04
Matches are distributed among these distances:
976 50 0.02
977 223 0.07
978 76 0.02
979 7 0.00
980 82 0.03
981 208 0.07
982 7 0.00
983 1 0.00
984 82 0.03
985 56 0.02
986 123 0.04
987 132 0.04
988 167 0.05
989 25 0.01
990 198 0.07
991 3 0.00
992 23 0.01
993 506 0.17
994 36 0.01
995 27 0.01
996 203 0.07
997 762 0.25
998 33 0.01
999 15 0.00
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (996 bp):
ATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTCTTAA
TTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATCA
TTGCTGAGATTTGGCTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATCATGCAAA
ACTTAGTCGGGCCTCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGATTTCGGC
TAAAATTATGCAAAAATTGACCCGAAAGATTTTTCATCAATTTTTTCCCACAATACTCATAAAAA
TATATAATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTTCTTTTTTT
TTCCGAATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAA
TCCATCATTGCTGAGATTTGGCTAGATGAAAATAGATATTTCAAGGAGTCTTGGCGTCAAAAATC
ATGCAAAACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACACGA
TTTCGACTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCAGAATACTC
ATAAAAAATATATAATTCAACGCCAAAAAGATTGGAGGGCTTTTCACGCTTCTAATATCGTTTTT
CTTTTTTTTTCTTAATTATTTTCTAAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAA
TCCTTAAATCCATCATTGCTGAGATTTGGTTAGATGAAAATAGATATTCCAAGGAGTCTCGGCGC
CAAAAATCATGCAAAACTTAGTCGGGCCGCCAGAACGCGTTTTTAGCCTAAAACCGTGATGGTTA
GTACACGATTTCGGCTAAAATTTTGCAAAGATTGACCCGAAAGATTTTTCCTCAATTTTTTCCCA
GAATACTCATAAAAATATATA
Done.