Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019711.1 Corchorus olitorius cultivar O-4 contig19744, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11110
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32


Found at i:5697 original size:1 final size:1

Alignment explanation


    Indices: 5691--5727  Score: 74
    Period size: 1  Copynumber: 37.0  Consensus size: 1

       5681 AAGCTTTCTG

                                                 
       5691 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

       5728 CTTGCCTGTT


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   36  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Done.