Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019712.1 Corchorus olitorius cultivar O-4 contig19745, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19667
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31


Found at i:10636 original size:13 final size:13

Alignment explanation


    Indices: 10618--10642  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

      10608 CTATTTTGTA

                         
      10618 TACTATGAAATAG
          1 TACTATGAAATAG

                        
      10631 TACTATGAAATA
          1 TACTATGAAATA

      10643 TATTCCGTTA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32


Consensus pattern (13 bp):   
TACTATGAAATAG

Found at i:15195 original size:15 final size:15

Alignment explanation


    Indices: 15175--15207  Score: 57
    Period size: 15  Copynumber: 2.2  Consensus size: 15

      15165 ATGGTGTTCC

                           
      15175 TGTTCCGGTTGATGG
          1 TGTTCCGGTTGATGG

                       *   
      15190 TGTTCCGGTTGTTGG
          1 TGTTCCGGTTGATGG

               
      15205 TGT
          1 TGT

      15208 GGTGGATGGG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.03, C:0.12, G:0.39, T:0.45


Consensus pattern (15 bp):   
TGTTCCGGTTGATGG
Done.