Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019713.1 Corchorus olitorius cultivar O-4 contig19746, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 134787
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:622 original size:21 final size:19
Alignment explanation
Indices: 596--653 Score: 71
Period size: 21 Copynumber: 2.9 Consensus size: 19
586 CGCTGCTCTA
*
596 ATAATCTCATCTGTACAGT
1 ATAATCTCATATGTACAGT
*
615 ACATAATCTAATATGTACAGT
1 --ATAATCTCATATGTACAGT
*
636 GTAATCTCATATGTACAG
1 ATAATCTCATATGTACAG
654 GCTCCTTATC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 16 0.48
21 17 0.52
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.34
Consensus pattern (19 bp):
ATAATCTCATATGTACAGT
Found at i:761 original size:21 final size:19
Alignment explanation
Indices: 735--786 Score: 68
Period size: 21 Copynumber: 2.6 Consensus size: 19
725 CGCTGCTCTA
735 ATAATCTCATCTGTACAGT
1 ATAATCTCATCTGTACAGT
*
754 ACATAATCTAATCTGTACAGT
1 --ATAATCTCATCTGTACAGT
*
775 GTAATCTCATCT
1 ATAATCTCATCT
787 ATATAGTTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 10 0.36
21 18 0.64
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.37
Consensus pattern (19 bp):
ATAATCTCATCTGTACAGT
Found at i:781 original size:139 final size:140
Alignment explanation
Indices: 530--784 Score: 431
Period size: 139 Copynumber: 1.8 Consensus size: 140
520 ACTGTTTGAT
** *
530 CGTTTCACCATTGTTTTAGGACCAAAAGGAAGTTTAAGTGTAAACTCCATTTCAATCGCTGCTCT
1 CGTTTCACCACCGTTTTAGGACCAAAAGGAAGCTTAAGTGTAAACTCCATTTCAATCGCTGCTCT
595 AATAATCTCATCTGTACAGTACATAATCTAATATGTACAGTGTAATCTCATATGTACAGGCTCCT
66 AATAATCTCATCTGTACAGTACATAATCTAATATGTACAGTGTAATCTCATATGTACAGGCTCCT
660 TATCTGTAAC
131 TATCTGTAAC
* * **
670 CGTTTCACCACCGTTTTGGGACCAAACGG-AGCTTAAGTGTAAACTCTGTTTCAATCGCTGCTCT
1 CGTTTCACCACCGTTTTAGGACCAAAAGGAAGCTTAAGTGTAAACTCCATTTCAATCGCTGCTCT
*
734 AATAATCTCATCTGTACAGTACATAATCTAATCTGTACAGTGTAATCTCAT
66 AATAATCTCATCTGTACAGTACATAATCTAATATGTACAGTGTAATCTCAT
785 CTATATAGTT
Statistics
Matches: 107, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
139 82 0.77
140 25 0.23
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (140 bp):
CGTTTCACCACCGTTTTAGGACCAAAAGGAAGCTTAAGTGTAAACTCCATTTCAATCGCTGCTCT
AATAATCTCATCTGTACAGTACATAATCTAATATGTACAGTGTAATCTCATATGTACAGGCTCCT
TATCTGTAAC
Found at i:879 original size:57 final size:57
Alignment explanation
Indices: 791--902 Score: 170
Period size: 57 Copynumber: 2.0 Consensus size: 57
781 TCATCTATAT
* * * *
791 AGTTGCCAAACAGTGTCAATCGCACCGCTACCGCACCGCTCTACTAAACGAAGCCAC
1 AGTTGCCAAACAGTGTCAATCACACCGCTACCACACCACTCTACTAAAAGAAGCCAC
* *
848 AGTTGCCAAACAGTGTCAATCACACGGCTACCACATCACTCTACTAAAAGAAGCC
1 AGTTGCCAAACAGTGTCAATCACACCGCTACCACACCACTCTACTAAAAGAAGCC
903 TTAAGACATG
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.33, C:0.34, G:0.16, T:0.17
Consensus pattern (57 bp):
AGTTGCCAAACAGTGTCAATCACACCGCTACCACACCACTCTACTAAAAGAAGCCAC
Found at i:1863 original size:3 final size:3
Alignment explanation
Indices: 1857--1881 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
1847 TATGCTTTTT
1857 TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
1882 ACATCTATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:29442 original size:33 final size:33
Alignment explanation
Indices: 29400--29463 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
29390 AATTTCTTGA
*
29400 TTTTTTTTTTACTTATAAGACCTGAACTCAATT
1 TTTTTTTTTTACTTATAAGACCCGAACTCAATT
29433 TTTTTTTTTTACTTATAAGACCCGAACTCAA
1 TTTTTTTTTTACTTATAAGACCCGAACTCAA
29464 AATCTTATTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.28, C:0.17, G:0.06, T:0.48
Consensus pattern (33 bp):
TTTTTTTTTTACTTATAAGACCCGAACTCAATT
Found at i:36861 original size:17 final size:18
Alignment explanation
Indices: 36834--36867 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
36824 AACAACATGG
36834 ATTACTATAATCATAATC
1 ATTACTATAATCATAATC
36852 ATTA-TATAATCATAAT
1 ATTACTATAATCATAAT
36868 ACGCTATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (18 bp):
ATTACTATAATCATAATC
Found at i:36982 original size:17 final size:18
Alignment explanation
Indices: 36955--37002 Score: 66
Period size: 17 Copynumber: 2.8 Consensus size: 18
36945 AACAACATGG
36955 ATTACTATAATCATAATT
1 ATTACTATAATCATAATT
36973 ATTA-TATAATCATAATT
1 ATTACTATAATCATAATT
*
36990 A--GCTATAATCATA
1 ATTACTATAATCATA
37003 TATATATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 10 0.36
17 14 0.50
18 4 0.14
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.42
Consensus pattern (18 bp):
ATTACTATAATCATAATT
Found at i:37460 original size:73 final size:74
Alignment explanation
Indices: 37380--37531 Score: 288
Period size: 73 Copynumber: 2.1 Consensus size: 74
37370 ATGTACAAAC
37380 TAATATTTTTAATCTATTACTAACTTTAGGGCATATTCTCAATG-TTTTTTTTTAGAAATCATAT
1 TAATATTTTTAATCTATTACTAACTTTAGGGCATATTCTCAATGTTTTTTTTTTAGAAATCATAT
37444 GTTCAATGT
66 GTTCAATGT
*
37453 TAATATTTTTAATTTATTACTAACTTTAGGGCATATTCTCAATGTTTTTTTTTTAGAAATCATAT
1 TAATATTTTTAATCTATTACTAACTTTAGGGCATATTCTCAATGTTTTTTTTTTAGAAATCATAT
37518 GTTCAATGT
66 GTTCAATGT
37527 TAATA
1 TAATA
37532 GTATAACCAT
Statistics
Matches: 77, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
73 43 0.56
74 34 0.44
ACGTcount: A:0.31, C:0.10, G:0.09, T:0.50
Consensus pattern (74 bp):
TAATATTTTTAATCTATTACTAACTTTAGGGCATATTCTCAATGTTTTTTTTTTAGAAATCATAT
GTTCAATGT
Found at i:42277 original size:28 final size:30
Alignment explanation
Indices: 42218--42279 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
42208 AAATGACTTC
*
42218 AAATTGCAAGTTCAAGGGGCAAAATGTCCA
1 AAATTGCAAGTTCAAGGGGCAAAACGTCCA
* *
42248 AAATTG-AAGTTTAGGGGGCAAAACGT-CA
1 AAATTGCAAGTTCAAGGGGCAAAACGTCCA
42276 AAAT
1 AAAT
42280 CATACAAGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 6 0.21
29 17 0.59
30 6 0.21
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (30 bp):
AAATTGCAAGTTCAAGGGGCAAAACGTCCA
Found at i:43464 original size:1 final size:1
Alignment explanation
Indices: 43458--43482 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
43448 TAATAGGCGG
43458 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
43483 AAAGCCAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:54747 original size:1 final size:1
Alignment explanation
Indices: 54741--54781 Score: 82
Period size: 1 Copynumber: 41.0 Consensus size: 1
54731 CATGTTAAAG
54741 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
54782 GAACAAACGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:57023 original size:20 final size:20
Alignment explanation
Indices: 56998--57040 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
56988 GACTTGCAAG
56998 TCATTAAGAACCTTCAATTT
1 TCATTAAGAACCTTCAATTT
* *
57018 TCATTAAGAACTTTGAATTT
1 TCATTAAGAACCTTCAATTT
57038 TCA
1 TCA
57041 CACAAACCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.35, C:0.16, G:0.07, T:0.42
Consensus pattern (20 bp):
TCATTAAGAACCTTCAATTT
Found at i:64918 original size:18 final size:18
Alignment explanation
Indices: 64895--64929 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
64885 TACTAATCTA
64895 ATATTAATAGAATAGAAT
1 ATATTAATAGAATAGAAT
*
64913 ATATTAATATAATAGAA
1 ATATTAATAGAATAGAA
64930 AGAAAATTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (18 bp):
ATATTAATAGAATAGAAT
Found at i:72224 original size:15 final size:15
Alignment explanation
Indices: 72206--72244 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
72196 ATATCTTGAA
* * *
72206 GATGATGACGAGGAT
1 GATGATGATGACGAG
72221 GATGATGATGACGAG
1 GATGATGATGACGAG
72236 GATGATGAT
1 GATGATGAT
72245 AGTGGTGACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.38, T:0.23
Consensus pattern (15 bp):
GATGATGATGACGAG
Found at i:72229 original size:18 final size:18
Alignment explanation
Indices: 72206--72244 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
72196 ATATCTTGAA
72206 GATGATGACGAGGATGAT
1 GATGATGACGAGGATGAT
72224 GATGATGACGAGGATGAT
1 GATGATGACGAGGATGAT
72242 GAT
1 GAT
72245 AGTGGTGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.38, T:0.23
Consensus pattern (18 bp):
GATGATGACGAGGATGAT
Found at i:73157 original size:40 final size:40
Alignment explanation
Indices: 73108--73188 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
73098 TTCGTTTACT
73108 GTAAACCTCATAGCAGCTGGATTCTTAGTTCCAGTGACTA
1 GTAAACCTCATAGCAGCTGGATTCTTAGTTCCAGTGACTA
73148 GTAAACCTCATAGCAGCTGGATTCTTAGTTCCAGTGACTA
1 GTAAACCTCATAGCAGCTGGATTCTTAGTTCCAGTGACTA
73188 G
1 G
73189 AGTTCGATCC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (40 bp):
GTAAACCTCATAGCAGCTGGATTCTTAGTTCCAGTGACTA
Found at i:80046 original size:2 final size:2
Alignment explanation
Indices: 80039--80076 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
80029 AATAATCAAC
80039 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80077 CTTGTAAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:83441 original size:3 final size:3
Alignment explanation
Indices: 83428--83466 Score: 51
Period size: 3 Copynumber: 12.0 Consensus size: 3
83418 ATTGATAAAA
83428 TAT TCAT TAT TAT TAT TAT TAT TAT TAT TGAT ATAT TAT
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT T-AT -TAT TAT
83467 ATAAATAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 25 0.76
4 7 0.21
5 1 0.03
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:83807 original size:2 final size:2
Alignment explanation
Indices: 83793--83832 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
83783 ATATATGCAA
*
83793 AT AT AC AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
83833 CTGGTTCTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:93607 original size:19 final size:19
Alignment explanation
Indices: 93583--93621 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
93573 TGTATTTATA
93583 ACCGTTTCATCAACGTTTT
1 ACCGTTTCATCAACGTTTT
*
93602 ACCGTTTCATCATCGTTTT
1 ACCGTTTCATCAACGTTTT
93621 A
1 A
93622 GACTCAAACG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.26, G:0.10, T:0.44
Consensus pattern (19 bp):
ACCGTTTCATCAACGTTTT
Found at i:107206 original size:20 final size:19
Alignment explanation
Indices: 107159--107202 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
107149 CTTTTGTTAA
107159 TTTTGCTTTAATCTGACTT
1 TTTTGCTTTAATCTGACTT
*
107178 TTTTGCTTTAATCTGTCTT
1 TTTTGCTTTAATCTGACTT
107197 TTTTGC
1 TTTTGC
107203 CTTTTAAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.11, C:0.16, G:0.11, T:0.61
Consensus pattern (19 bp):
TTTTGCTTTAATCTGACTT
Found at i:107762 original size:12 final size:12
Alignment explanation
Indices: 107745--107773 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
107735 ATGAATTATT
107745 ATCAGATCCACC
1 ATCAGATCCACC
107757 ATCAGATCCACC
1 ATCAGATCCACC
107769 ATCAG
1 ATCAG
107774 TGGAGTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.38, G:0.10, T:0.17
Consensus pattern (12 bp):
ATCAGATCCACC
Found at i:114679 original size:14 final size:14
Alignment explanation
Indices: 114660--114686 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
114650 TTTTTAGCAC
114660 CTATATATATATAG
1 CTATATATATATAG
114674 CTATATATATATA
1 CTATATATATATA
114687 TATAATTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.44
Consensus pattern (14 bp):
CTATATATATATAG
Found at i:125980 original size:42 final size:42
Alignment explanation
Indices: 125893--125982 Score: 99
Period size: 42 Copynumber: 2.1 Consensus size: 42
125883 TTGCAGCAGT
** * ** * *
125893 AAAACCTGATCTTTCTACCATAAAACCTGAAAGGGCATCAGC
1 AAAACCTGATCTCCCTACCACAAAACCTGAAAGCACAGCACC
* *
125935 AAAACCTGATCTCCCTACCACAAGACCTGTAAGCACAGCACC
1 AAAACCTGATCTCCCTACCACAAAACCTGAAAGCACAGCACC
125977 AAAACC
1 AAAACC
125983 CGATTACTTC
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.39, C:0.32, G:0.12, T:0.17
Consensus pattern (42 bp):
AAAACCTGATCTCCCTACCACAAAACCTGAAAGCACAGCACC
Found at i:129049 original size:61 final size:61
Alignment explanation
Indices: 128973--129092 Score: 222
Period size: 61 Copynumber: 2.0 Consensus size: 61
128963 TCTCAGGTTC
* *
128973 GAGACCTTGTGTACGCAGCTGCCCCTGTGAGACTGACTAGGTGCGCGTCAATAAATTTACT
1 GAGACCTTGTATACGCAGCTGCCCCTGTGAGACTGACCAGGTGCGCGTCAATAAATTTACT
129034 GAGACCTTGTATACGCAGCTGCCCCTGTGAGACTGACCAGGTGCGCGTCAATAAATTTA
1 GAGACCTTGTATACGCAGCTGCCCCTGTGAGACTGACCAGGTGCGCGTCAATAAATTTA
129093 TCAAATTGTA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (61 bp):
GAGACCTTGTATACGCAGCTGCCCCTGTGAGACTGACCAGGTGCGCGTCAATAAATTTACT
Found at i:130504 original size:16 final size:16
Alignment explanation
Indices: 130483--130517 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
130473 ACAATTCAGA
130483 AAGCAGAAAAGCTCTG
1 AAGCAGAAAAGCTCTG
130499 AAGCAGAAAAGCTCTG
1 AAGCAGAAAAGCTCTG
130515 AAG
1 AAG
130518 TATTTTCAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (16 bp):
AAGCAGAAAAGCTCTG
Found at i:130673 original size:41 final size:41
Alignment explanation
Indices: 130623--131062 Score: 544
Period size: 41 Copynumber: 10.6 Consensus size: 41
130613 TTGAAGATTG
**
130623 AGTCATCGAGACCCTTGAATTAAATTATCAATTCAAGATTG
1 AGTCATCGAGACCCTTGAATTAAATTATCAATTCAAGATCA
* *
130664 AGTCATCGAGACCCTTGAATTAAATTAACAATTCAAGATTGA
1 AGTCATCGAGACCCTTGAATTAAATTATCAATTCAAGA-TCA
* *
130706 A-TCATCGAGACCCTTGAATTAAATTATCAATTCAAAAACA
1 AGTCATCGAGACCCTTGAATTAAATTATCAATTCAAGATCA
* **
130746 AGTCATCGAGACCCTTGAATTAAATTAACAATTCAAGATTG
1 AGTCATCGAGACCCTTGAATTAAATTATCAATTCAAGATCA
*
130787 AGTCATCGAGACCCTTGATGAATTAAATTATCAATTCAAGAACA
1 AGTCATCGAGACCC-T--TGAATTAAATTATCAATTCAAGATCA
**
130831 AGTCATCGAGACCCTTGAATTAAATTATCAATTCAAGATTG
1 AGTCATCGAGACCCTTGAATTAAATTATCAATTCAAGATCA
* *
130872 AGTCATCGAGACCCTTGAATTAAATTATTAATTCAAGAACA
1 AGTCATCGAGACCCTTGAATTAAATTATCAATTCAAGATCA
* *
130913 AGTCATCGAGACCCTTGAATTGAATTATCAATTCAAGAACA
1 AGTCATCGAGACCCTTGAATTAAATTATCAATTCAAGATCA
** * *
130954 AGTCATCGAGAATCTTGAATCGAATTATTATCAATTCAAGACCA
1 AGTCATCGAGACCCTTGAAT-TAA--ATTATCAATTCAAGATCA
* * * * * *
130998 AGTCGTCAAGACCCTTGAATTAGATTGTTAATTCAAGACCA
1 AGTCATCGAGACCCTTGAATTAAATTATCAATTCAAGATCA
*
131039 AGTCATTC--GACCCTTGAATCAAAT
1 AGTCA-TCGAGACCCTTGAATTAAAT
131063 CAAATCAAAC
Statistics
Matches: 349, Mismatches: 41, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
40 16 0.05
41 256 0.73
42 6 0.02
43 2 0.01
44 69 0.20
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (41 bp):
AGTCATCGAGACCCTTGAATTAAATTATCAATTCAAGATCA
Found at i:130889 original size:167 final size:167
Alignment explanation
Indices: 130616--131035 Score: 607
Period size: 167 Copynumber: 2.5 Consensus size: 167
130606 TCGTTTGTTG
***
130616 AAGATTGAGTCATCGAGACCC-T--TGAATTAAATTATCAATTCAAGATTGAGTCATCGAGACCC
1 AAGATTGAGTCATCGAGACCCTTGATGAATTAAATTATCAATTCAAGAACAAGTCATCGAGACCC
*
130678 TTGAATTAAATTAACAATTCAAGATTGAATCATCGAGACCCTTGAATTAAATTATCAATTCAAAA
66 TTGAATTAAATTATCAATTCAAGATTGAATCATCGAGACCCTTGAATTAAATTATCAATTCAAAA
130743 ACAAGTCATCGAGACCCTTGAATTAAATTAACAATTC
131 ACAAGTCATCGAGACCCTTGAATTAAATTAACAATTC
130780 AAGATTGAGTCATCGAGACCCTTGATGAATTAAATTATCAATTCAAGAACAAGTCATCGAGACCC
1 AAGATTGAGTCATCGAGACCCTTGATGAATTAAATTATCAATTCAAGAACAAGTCATCGAGACCC
* * *
130845 TTGAATTAAATTATCAATTCAAGATTGAGTCATCGAGACCCTTGAATTAAATTATTAATTCAAGA
66 TTGAATTAAATTATCAATTCAAGATTGAATCATCGAGACCCTTGAATTAAATTATCAATTCAAAA
* *
130910 ACAAGTCATCGAGACCCTTGAATTGAATTATCAATTC
131 ACAAGTCATCGAGACCCTTGAATTAAATTAACAATTC
*** ** * * *
130947 AAGAACAAGTCATCGAGAATCTTGAATCGAATT--ATTATCAATTCAAGACCAAGTCGTCAAGAC
1 AAGATTGAGTCATCGAGACCCTTG-AT-GAATTAAATTATCAATTCAAGAACAAGTCATCGAGAC
* * *
131010 CCTTGAATTAGATTGTTAATTCAAGA
64 CCTTGAATTAAATTATCAATTCAAGA
131036 CCAAGTCATT
Statistics
Matches: 231, Mismatches: 20, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
164 21 0.09
165 1 0.00
167 202 0.87
168 2 0.01
169 5 0.02
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.29
Consensus pattern (167 bp):
AAGATTGAGTCATCGAGACCCTTGATGAATTAAATTATCAATTCAAGAACAAGTCATCGAGACCC
TTGAATTAAATTATCAATTCAAGATTGAATCATCGAGACCCTTGAATTAAATTATCAATTCAAAA
ACAAGTCATCGAGACCCTTGAATTAAATTAACAATTC
Found at i:133030 original size:667 final size:665
Alignment explanation
Indices: 131365--134693 Score: 4692
Period size: 667 Copynumber: 5.1 Consensus size: 665
131355 CCATTAAGAT
* *
131365 TGGTTAGTACACGATTTCGGCAAAAATTTTGCAAATATTGACCCGAAAGATTTTTCATCAATTTT
1 TGGTTAATACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCATCAATTTT
* *
131430 TAACCGCAATACTCGTAAAAAATATATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTT
66 TAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGAGCTTTTCACGCTT
* * * *
131495 CTAATATCATTTTTTCAATTCTTTCCTGAATTAATTT-TGAATTAATTAGAAACAAGA-TCTTGA
131 CTAATATCATTTTTTCAATTTTTTCCTGAATTAATTTCT-AATTAAATCGAAACAAGATTC-AGA
*
131558 TGATCGTAAAAACAAATCCATAAATCCATTGTGGCTGAGATTTGAGATGATGAATATAGATATTT
194 TGATCGTAAAAACAAATCCATAAATCCATTGTGGCTGAGATTTGGGATGATGAATATAGATATTT
* * * * **
131623 GAATGAGTATTGGTGCCAAAAATAATGCAAAAACTGAGCAAGGGCCCCGGAACGCGTTTTTAGCC
259 CAATGAGTCTTGGCGCCAAAAATCATGC-AAAACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCC
131688 AAAAACCGTGATGATTAGTACACGATTTCGGCAAAAACTTTGCAAAAATTGACCCGAAA-ATTTT
323 AAAAACCGTGATG-TTAGTACACGATTTCGGCAAAAACTTTGCAAAAATTGACCCGAAAGATTTT
* *
131752 TCCTTAATTTTGAACCGCAATACTTGTAAAAAATATATAATTCAACGACAGAAAGATTGAAAGGC
387 TCCTTAATTTTGAACCGCAATACTCGTAAAAAATATATAATTCAACGGCAGAAAGATTGAAAGGC
*
131817 TTTTCAGGCGTCTAATATCATTCTCTTTCAATTTTTTTCGTATTAATTTCCGATTAAATCGAAAC
452 TTTTCAGGCGTCTAATATCATT-TCTTTCAATTTTTTCCGTATTAATTTCCGATTAAATCGAAAC
*
131882 ATGATTCAGATGCTCGTAAAATCAAATCCTT-AATCCAATGTGGTTGAGATTTGGGATGATGAAT
516 ATGATTCAGATGCTCGTAAAATCAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAAT
** *
131946 ATAGATATTTTGATCAGTCTTGGCGCCAAAAATCATGC-AAACTTAGTCGGGGCCCCAGATCGCG
581 ATAGATATTTCAATCAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGGCCCCAGATCGCG
*
132010 TTTTTAGCCAAAAACTGTGA
646 TTTTTAGCCAAAAACCGTGA
* *
132030 TGGTTAATACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGGTTTTTCTTCAATTTT
1 TGGTTAATACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCATCAATTTT
* * *
132095 TAACCGCAATACTCATAAAAAGTATATAATTCAACGCCAAAAAGATTGAAGAGATTTTCACGCTT
66 TAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGAGCTTTTCACGCTT
* * *
132160 CTAATATAATTTTTTCAATTCTTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATG
131 CTAATATCATTTTTTCAATTTTTTCCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATG
* *
132225 ATCGTAAAAACAAATCCATAAATCCATTGTGGCTGAGATTTGGGATGATTAATATATATATTTCA
196 ATCGTAAAAACAAATCCATAAATCCATTGTGGCTGAGATTTGGGATGATGAATATAGATATTTCA
* * * *
132290 ATGAGTCTTGGCGCCAAAAATCAAGCAAAACTGAGCCGGGGCCCTGTAACCCGTTTTTAGCCAAA
261 ATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCCAAA
* *
132355 AACCGTGATGGTTAGTACACGATTTCGGCAAAAACTTTGCAAATATTGACCCGAAAGATTTTTCA
326 AACCGTGAT-GTTAGTACACGATTTCGGCAAAAACTTTGCAAAAATTGACCCGAAAGATTTTTCC
* * * * * *
132420 TCAATTTTTAACCACAATACTCCTAAAAAATATATAATTCAACGCCA-ACAAGATTGAATGGCTT
390 TTAATTTTGAACCGCAATACTCGTAAAAAATATATAATTCAACGGCAGA-AAGATTGAAAGGCTT
* * * * * ** * * *
132484 TTCACGCTTCTAATTTCATTT-TTTCAATTCTTTCCCGAATTAATTTCTAATTAATTAGAAACAA
454 TTCAGGCGTCTAATATCATTTCTTTCAATT-TTTTCCGTATTAATTTCCGATTAAATCGAAACAT
* * * * * * * *
132548 GATTCTGATGATCGTAAAAACAAATCCTGAAATTCATTGTGGCTGAGAATTGGGATGATTAATAT
518 GATTCAGATGCTCGTAAAATCAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATAT
* * *
132613 AGATATTTCAATGAGTCTTGGCGCCAAAAAGCATGCAAAACTTAGCCGGGGCCCCAGAACGCGTT
583 AGATATTTCAATCAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGGCCCCAGATCGCGTT
132678 TTTAGCCAAAAACCGTGA
648 TTTAGCCAAAAACCGTGA
* * * *
132696 TGGTTAGTACACGATTTCGGCAAAAACTTTGCAAAAATTGACCCGAAAGA-TTTTCGCTTAATTT
1 TGGTTAATACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTC-ATCAATTT
* * * * * * *
132760 TGAACCGCAATACTCGTAAAAAATATATAATTCAATGGCATAAAGATTGAAGGGCTTTTCAGGCG
65 TTAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGAGCTTTTCACGCT
* ** *
132825 TCTAATATCATTTTCTTTCAATTTTTTCC-GTATTAATTTCCGATTAAATCGAAACATGATTCAG
130 TCTAATATCA-TTT-TTTCAATTTTTTCCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAG
** * ** * *
132889 ATTCTCGTAAAATCAAATCTTTGAATCCAATGTGGCTGAGATTTGGGATGATGAATATAGATATT
193 ATGATCGTAAAAACAAATCCATAAATCCATTGTGGCTGAGATTTGGGATGATGAATATAGATATT
**
132954 TCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTTTGCCGGGGCCCCGGAACGCGTTTTTAGCC
258 TCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCC
*
133019 AAAAACCGTGATGGTTAGTACACGATTTCGGCAAAAACTTTGCAAAAATCGACCCGAAAGA-TTT
323 AAAAACCGTGAT-GTTAGTACACGATTTCGGCAAAAACTTTGCAAAAATTGACCCGAAAGATTTT
* * * *
133083 TCCTTAATTTTGAGCTGCAATACTCGTAAAAAATATATAATTCAACGGTAGAAAGATTGAAGGGC
387 TCCTTAATTTTGAACCGCAATACTCGTAAAAAATATATAATTCAACGGCAGAAAGATTGAAAGGC
133148 TTTTCAGGCGTCTAATATCATTTTCTTTCAATTTTTTCCGTATTAATTTCCGATTAAATCGAAAC
452 TTTTCAGGCGTCTAATATCA-TTTCTTTCAATTTTTTCCGTATTAATTTCCGATTAAATCGAAAC
* * *
133213 ATGATTTAGATGATCGTAAAATCAAATCCTTAAATCCAATGTGGCTAAGATTTGGGATGATGAAT
516 ATGATTCAGATGCTCGTAAAATCAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAAT
*
133278 ATAGATATTTCAATCAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGGCCCCAGATCACG
581 ATAGATATTTCAATCAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGGCCCCAGATCGCG
133343 TTTTTAGCCAAAAACCGTGA
646 TTTTTAGCCAAAAACCGTGA
* *
133363 TGGTTAATACACGATTTCGGCAAAAATTTTGCAAATATTGACCAGAAAGATTTTTCATCAATTTT
1 TGGTTAATACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCATCAATTTT
* * * * *
133428 TAACCACAATACTCATAAAAAATTTATAATTCAACGCCAAAAAGATTGAAGAGATTTTCAAGCTT
66 TAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGAGCTTTTCACGCTT
* *
133493 CTAATATCATTTTTTCAAATTTTTCCTGAATTAATTTCTAATTAAATCGAAACAAGATTCGGATG
131 CTAATATCATTTTTTCAATTTTTTCCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATG
*
133558 ATCGTAAAAACAAATCCATAAATCCATTGTGGCTGAGATTTGGGATGATGAATATAGATATTTGA
196 ATCGTAAAAACAAATCCATAAATCCATTGTGGCTGAGATTTGGGATGATGAATATAGATATTTCA
* * *
133623 ATGACTCTTGGCGCCAAAAATCATGCAAAATTGAGCCGGGGCCCCGTAACGCGTTTTTAGCCAAA
261 ATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCCAAA
133688 AA-C-------T-GT---CGA------CAAAAACTTTGCAAAAATTGACCCGAAAGATTTTTCCT
326 AACCGTGATGTTAGTACACGATTTCGGCAAAAACTTTGCAAAAATTGACCCGAAAGATTTTTCCT
* *
133735 AAATTTTGAACCGTAATACTCGTAAAAAATATATAATTCAACGGCAGAAAGATTGAAAGGCTTTT
391 TAATTTTGAACCGCAATACTCGTAAAAAATATATAATTCAACGGCAGAAAGATTGAAAGGCTTTT
* * * *
133800 CAGGCGTATAATATCATTTTATTTTAATTTTTTCCGTATTAATTTCCGTTTAAATCGAAACATGA
456 CAGGCGTCTAATATCA-TTTCTTTCAATTTTTTCCGTATTAATTTCCGATTAAATCGAAACATGA
133865 TTCAGATGCTCGTAAAATCAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATATAG
520 TTCAGATGCTCGTAAAATCAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATATAG
* *
133930 ATATTTCAATCAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGTCCCC-GTAACGCGTTT
585 ATATTTCAATCAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGGCCCCAG-ATCGCGTTT
* *
133994 GTAGTCAAAAACCGTGA
649 TTAGCCAAAAACCGTGA
* * * * *
134011 TGGTTAGTACACGATTTTC-GCAAAAATTTTGCAAATACTAACCCGAAGGATTTTTCATCAATTT
1 TGGTTAATACACGA-TTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCATCAATTT
* * * * * *
134075 TTAACCGCAATACTTGTAAAAAATATATAACTCAACTCCAAAAAGATTGACGTGCTTTTCACACT
65 TTAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGAGCTTTTCACGCT
* * * *
134140 TCTAATATCA-TTTTTCAATTCTTTCCTGAATTAATTTCTAATTAATTAGAAACAAGATTCTGAT
130 TCTAATATCATTTTTTCAATTTTTTCCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGAT
* * *
134204 GATCGTAAAAACAAATCCATAAATCCATTGTGGTTGAAATTTGGGATGATGAAGATAGATA----
195 GATCGTAAAAACAAATCCATAAATCCATTGTGGCTGAGATTTGGGATGATGAATATAGATATTTC
*
134265 AATGAGTCTTGGCGCC-AAAATCATGCAAAACTGAGCCGGGG-CCCGGAACACGTTTTTAGCCAA
260 AATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCCAA
* *
134328 AAACC---------GT----GATTTCGGCAAAAATTTTGCAGAAATTGACCCGAAA-ATTTTTTC
325 AAACCGTGATGTTAGTACACGATTTCGGCAAAAACTTTGCAAAAATTGACCCGAAAGA-TTTTTC
* *
134379 CTTAATTTTGAACCGTAATACTCGTAGAAAATATATAATTCAACGGCAGAAAGATTG-AAGTGCT
389 CTTAATTTTGAACCGCAATACTCGTAAAAAATATATAATTCAACGGCAGAAAGATTGAAAG-GCT
* * * *
134443 TTTCAGGCGTCTAATATCATTCTCTTTTAATTTTTTTCGTATTAATTTCCGTTTAAATTGAAACA
453 TTTCAGGCGTCTAATATCATT-TCTTTCAATTTTTTCCGTATTAATTTCCGATTAAATCGAAACA
*
134508 TGATTCAGATGCTCGTAAAATCAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATT
517 TGATTCAGATGCTCGTAAAATCAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATA
* ** ** * *
134573 TAGATATTTCGATCAGTCTTGAAGCCAAAAATCATGCAAAACTTAATCGAGGCCCCAGCTCGCGT
582 TAGATATTTCAATCAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGGCCCCAGATCGCGT
*
134638 TTTTAGCAAAAAACCGTGA
647 TTTTAGCCAAAAACCGTGA
*
134657 TGGTTAATACACGATTTCGGCAAAAATTTTGTAAAAA
1 TGGTTAATACACGATTTCGGCAAAAATTTTGCAAAAA
134694 ACCGTGATGG
Statistics
Matches: 2392, Mismatches: 241, Indels: 81
0.88 0.09 0.03
Matches are distributed among these distances:
640 2 0.00
641 25 0.01
642 25 0.01
643 15 0.01
645 10 0.00
646 311 0.13
647 138 0.06
648 381 0.16
649 4 0.00
653 3 0.00
656 2 0.00
657 1 0.00
663 8 0.00
664 140 0.06
665 420 0.18
666 391 0.16
667 490 0.20
668 26 0.01
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (665 bp):
TGGTTAATACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCATCAATTTT
TAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGAGCTTTTCACGCTT
CTAATATCATTTTTTCAATTTTTTCCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATG
ATCGTAAAAACAAATCCATAAATCCATTGTGGCTGAGATTTGGGATGATGAATATAGATATTTCA
ATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCCAAA
AACCGTGATGTTAGTACACGATTTCGGCAAAAACTTTGCAAAAATTGACCCGAAAGATTTTTCCT
TAATTTTGAACCGCAATACTCGTAAAAAATATATAATTCAACGGCAGAAAGATTGAAAGGCTTTT
CAGGCGTCTAATATCATTTCTTTCAATTTTTTCCGTATTAATTTCCGATTAAATCGAAACATGAT
TCAGATGCTCGTAAAATCAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATATAGA
TATTTCAATCAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGGCCCCAGATCGCGTTTTT
AGCCAAAAACCGTGA
Found at i:133033 original size:334 final size:333
Alignment explanation
Indices: 131365--134693 Score: 4180
Period size: 333 Copynumber: 10.1 Consensus size: 333
131355 CCATTAAGAT
* * *
131365 TGGTTAGTACACGATTTCGGCAAAAATTTTGCAAATATTGACCCGAAAGATTTTTCATCAATTTT
1 TGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTTAATTTT
* * * *
131430 TAACCGCAATACTCGTAAAAAATATATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTT
66 GAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCAGGCGT
* * * * *
131495 CTAATATCA-TTTTTTCAATTCTTTCCTGAATTAATTT-TGAATTAATTAGAAACAAGA-TCTTG
131 CTAATATCATTTTTTTCAATTTTTTCC-GAATTAATTTCCG-ATTAAATCGAAACAAGATTC-AG
* * *
131557 ATGATCGTAAAAACAAATCCATAAATCCATTGTGGCTGAGATTTGAGATGATGAATATAGATATT
193 ATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATATAGATATT
* * * * * **
131622 TGAATGAGTATTGGTGCCAAAAATAATGCAAAAACTGAGCAAGGGCCCCGGAACGCGTTTTTAGC
258 TCAATGAGTCTTGGCGCCAAAAATCATGC-AAAACTTAGCCGGGGCCCCGGAACGCGTTTTTAGC
131687 CAAAAACCGTGA
322 CAAAAACCGTGA
* *
131699 TGATTAGTACACGATTTCGGCAAAAACTTTGCAAAAATTGACCCGAAA-ATTTTTCCTTAATTTT
1 TGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTTAATTTT
* * * *
131763 GAACCGCAATACTTGTAAAAAATATATAATTCAACGACAGAAAGATTGAAAGGCTTTTCAGGCGT
66 GAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCAGGCGT
* * * *
131828 CTAATATCATTCTCTTTCAATTTTTTTCGTATTAATTTCCGATTAAATCGAAACATGATTCAGAT
131 CTAATATCATT-TTTTTCAATTTTTTCCGAATTAATTTCCGATTAAATCGAAACAAGATTCAGAT
* * * *
131893 GCTCGTAAAATCAAATCCTT-AATCCAATGTGGTTGAGATTTGGGATGATGAATATAGATATTTT
195 GATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATATAGATATTTC
* * * * *
131957 GATCAGTCTTGGCGCCAAAAATCATGC-AAACTTAGTCGGGGCCCCAGATCGCGTTTTTAGCCAA
260 AATGAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGGCCCCGGAACGCGTTTTTAGCCAA
*
132021 AAACTGTGA
325 AAACCGTGA
* *
132030 TGGTTAATACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGGTTTTT-CTTCAATTT
1 TGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTT-AATTT
* * * * * * *
132094 TTAACCGCAATACTCATAAAAAGTATATAATTCAACGCCAAAAAGATTGAAGAGATTTTCACGCT
65 TGAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCAGGCG
* * **
132159 TCTAATAT-AATTTTTTCAATTCTTTCCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGA
130 TCTAATATCATTTTTTTCAATT-TTTTCCGAATTAATTTCCGATTAAATCGAAACAAGATTCAGA
* * * *
132223 TGATCGTAAAAACAAATCCATAAATCCATTGTGGCTGAGATTTGGGATGATTAATATATATATTT
194 TGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATATAGATATTT
* * * * *
132288 CAATGAGTCTTGGCGCCAAAAATCAAGCAAAACTGAGCCGGGGCCCTGTAACCCGTTTTTAGCCA
259 CAATGAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGGCCCCGGAACGCGTTTTTAGCCA
132353 AAAACCGTGA
324 AAAACCGTGA
* * * *
132363 TGGTTAGTACACGATTTCGGCAAAAACTTTGCAAATATTGACCCGAAAGATTTTTCATCAATTTT
1 TGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTTAATTTT
* * * * * * *
132428 TAACCACAATACTCCTAAAAAATATATAATTCAACGCCAACAAGATTGAATGGCTTTTCACGCTT
66 GAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCAGGCGT
* * ** * * *
132493 CTAATTTCA-TTTTTTCAATTCTTTCCCGAATTAATTTCTAATTAATTAGAAACAAGATTCTGAT
131 CTAATATCATTTTTTTCAATT-TTTTCCGAATTAATTTCCGATTAAATCGAAACAAGATTCAGAT
* * * * *
132557 GATCGTAAAAACAAATCCTGAAATTCATTGTGGCTGAGAATTGGGATGATTAATATAGATATTTC
195 GATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATATAGATATTTC
* *
132622 AATGAGTCTTGGCGCCAAAAAGCATGCAAAACTTAGCCGGGGCCCCAGAACGCGTTTTTAGCCAA
260 AATGAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGGCCCCGGAACGCGTTTTTAGCCAA
132687 AAACCGTGA
325 AAACCGTGA
*
132696 TGGTTAGTACACGATTTCGGCAAAAACTTTGCAAAAATTGACCCGAAAGA-TTTTCGCTTAATTT
1 TGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTC-CTTAATTT
* * *
132760 TGAACCGCAATACTCGTAAAAAATATATAATTCAATGGCATAAAGATTGAAGGGCTTTTCAGGCG
65 TGAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCAGGCG
* *
132825 TCTAATATCATTTTCTTTCAATTTTTTCCGTATTAATTTCCGATTAAATCGAAACATGATTCAGA
130 TCTAATATCATTTT-TTTCAATTTTTTCCGAATTAATTTCCGATTAAATCGAAACAAGATTCAGA
** * * *
132890 TTCTCGTAAAATCAAATCTTTGAATCCAATGTGGCTGAGATTTGGGATGATGAATATAGATATTT
194 TGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATATAGATATTT
*
132955 CAATGAGTCTTGGCGCCAAAAATCATGCAAAACTTTGCCGGGGCCCCGGAACGCGTTTTTAGCCA
259 CAATGAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGGCCCCGGAACGCGTTTTTAGCCA
133020 AAAACCGTGA
324 AAAACCGTGA
* *
133030 TGGTTAGTACACGATTTCGGCAAAAACTTTGCAAAAATCGACCCGAAAGA-TTTTCCTTAATTTT
1 TGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTTAATTTT
* * ** *
133094 GAGCTGCAATACTCGTAAAAAATATATAATTCAACGGTAGAAAGATTGAAGGGCTTTTCAGGCGT
66 GAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCAGGCGT
* * *
133159 CTAATATCATTTTCTTTCAATTTTTTCCGTATTAATTTCCGATTAAATCGAAACATGATTTAGAT
131 CTAATATCATTTT-TTTCAATTTTTTCCGAATTAATTTCCGATTAAATCGAAACAAGATTCAGAT
* *
133224 GATCGTAAAATCAAATCCTTAAATCCAATGTGGCTAAGATTTGGGATGATGAATATAGATATTTC
195 GATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATATAGATATTTC
* * * *
133289 AATCAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGGCCCCAGATCACGTTTTTAGCCAA
260 AATGAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGGCCCCGGAACGCGTTTTTAGCCAA
133354 AAACCGTGA
325 AAACCGTGA
* * * * *
133363 TGGTTAATACACGATTTCGGCAAAAATTTTGCAAATATTGACCAGAAAGATTTTTCATCAATTTT
1 TGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTTAATTTT
* * * * * * * *
133428 TAACCACAATACTCATAAAAAATTTATAATTCAACGCCAAAAAGATTGAAGAGATTTTCAAGCTT
66 GAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCAGGCGT
* ** *
133493 CTAATATCA-TTTTTTCAAATTTTTCCTGAATTAATTTCTAATTAAATCGAAACAAGATTCGGAT
131 CTAATATCATTTTTTTCAATTTTTTCC-GAATTAATTTCCGATTAAATCGAAACAAGATTCAGAT
* * *
133557 GATCGTAAAAACAAATCCATAAATCCATTGTGGCTGAGATTTGGGATGATGAATATAGATATTTG
195 GATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATATAGATATTTC
* *
133622 AATGACTCTTGGCGCCAAAAATCATGCAAAA-TTGAGCCGGGGCCCCGTAACGCGTTTTTAGCCA
260 AATGAGTCTTGGCGCCAAAAATCATGCAAAACTT-AGCCGGGGCCCCGGAACGCGTTTTTAGCCA
133686 AAAA-C----
324 AAAACCGTGA
* *
133691 ----T-GT---CGA------CAAAAACTTTGCAAAAATTGACCCGAAAGATTTTTCCTAAATTTT
1 TGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTTAATTTT
* * * *
133742 GAACCGTAATACTCGTAAAAAATATATAATTCAACGGCAGAAAGATTGAAAGGCTTTTCAGGCGT
66 GAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCAGGCGT
* * * * *
133807 ATAATATCATTTTATTTTAATTTTTTCCGTATTAATTTCCGTTTAAATCGAAACATGATTCAGAT
131 CTAATATCATTTT-TTTCAATTTTTTCCGAATTAATTTCCGATTAAATCGAAACAAGATTCAGAT
* *
133872 GCTCGTAAAATCAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATATAGATATTTC
195 GATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATATAGATATTTC
* * * * *
133937 AATCAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGTCCCCGTAACGCGTTTGTAGTCAA
260 AATGAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGGCCCCGGAACGCGTTTTTAGCCAA
134002 AAACCGTGA
325 AAACCGTGA
* * * * * *
134011 TGGTTAGTACACGATTTTC-GCAAAAATTTTGCAAATACTAACCCGAAGGATTTTTCATCAATTT
1 TGGTTAGTACACGA-TTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTTAATTT
* * * * * * ** *
134075 TTAACCGCAATACTTGTAAAAAATATATAACTCAACTCCAAAAAGATTGACGTGCTTTTCACACT
65 TGAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCAGGCG
* ** * * *
134140 TCTAATATCA--TTTTTCAATTCTTTCCTGAATTAATTTCTAATTAATTAGAAACAAGATTCTGA
130 TCTAATATCATTTTTTTCAATTTTTTCC-GAATTAATTTCCGATTAAATCGAAACAAGATTCAGA
* * * * *
134203 TGATCGTAAAAACAAATCCATAAATCCATTGTGGTTGAAATTTGGGATGATGAAGATAGATA---
194 TGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATATAGATATTT
* *
134265 -AATGAGTCTTGGCGCC-AAAATCATGCAAAACTGAGCCGGGG-CCCGGAACACGTTTTTAGCCA
259 CAATGAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGGCCCCGGAACGCGTTTTTAGCCA
134327 AAAACC----
324 AAAACCGTGA
*
134333 ------GT----GATTTCGGCAAAAATTTTGCAGAAATTGACCCGAAA-ATTTTTTCCTTAATTT
1 TGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGA-TTTTTCCTTAATTT
* * * * *
134387 TGAACCGTAATACTCGTAGAAAATATATAATTCAACGGCAGAAAGATTGAAGTGCTTTTCAGGCG
65 TGAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCAGGCG
* * * * *
134452 TCTAATATCATTCTCTTTT-AATTTTTTTCGTATTAATTTCCGTTTAAATTGAAACATGATTCAG
130 TCTAATATCATT-T-TTTTCAATTTTTTCCGAATTAATTTCCGATTAAATCGAAACAAGATTCAG
* * *
134516 ATGCTCGTAAAATCAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATTTAGATATT
193 ATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATATAGATATT
* * ** ** * * ** *
134581 TCGATCAGTCTTGAAGCCAAAAATCATGCAAAACTTAATCGAGGCCCCAGCTCGCGTTTTTAGCA
258 TCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGGCCCCGGAACGCGTTTTTAGCC
134646 AAAAACCGTGA
323 AAAAACCGTGA
* *
134657 TGGTTAATACACGATTTCGGCAAAAATTTTGTAAAAA
1 TGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAA
134694 ACCGTGATGG
Statistics
Matches: 2592, Mismatches: 337, Indels: 132
0.85 0.11 0.04
Matches are distributed among these distances:
311 5 0.00
312 101 0.04
314 183 0.07
315 163 0.06
316 21 0.01
318 12 0.00
319 21 0.01
320 25 0.01
323 1 0.00
324 2 0.00
325 2 0.00
326 23 0.01
327 23 0.01
328 18 0.01
330 10 0.00
331 155 0.06
332 241 0.09
333 1059 0.41
334 503 0.19
335 24 0.01
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (333 bp):
TGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTTAATTTT
GAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCAGGCGT
CTAATATCATTTTTTTCAATTTTTTCCGAATTAATTTCCGATTAAATCGAAACAAGATTCAGATG
ATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGGATGATGAATATAGATATTTCA
ATGAGTCTTGGCGCCAAAAATCATGCAAAACTTAGCCGGGGCCCCGGAACGCGTTTTTAGCCAAA
AACCGTGA
Done.