Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019716.1 Corchorus olitorius cultivar O-4 contig19749, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 210512
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:831 original size:333 final size:330
Alignment explanation
Indices: 1--3658 Score: 3605
Period size: 333 Copynumber: 11.2 Consensus size: 330
* *
1 GAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTTACAACGATTTCGACAAAAAATCTTTGCAA
1 GAACGCGTTTTTAGCCAAAAACCGTGATGG-TAG-TAC-ACGATTTCGGCAAAAAA--TTTGCAA
* * *
66 AAATTGACCCGAAATATTTTTCTTCAA-TTTTAACCGCAATACTCATAAAAAATATATAATTCAA
61 AAATTGACCCGAAAGATTTTTCATCAATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAA
* * *
130 AGCCAAAAAGATTGAAGAGATTTTCACGCTT-TCAATATCATTTTTTCAATTCTTTCCCGAATTA
126 CGCCAAAAAGATTGAAGGGCTTTTCACGCTTCT-AATATCATTTTTTCAATTCTTTCCCGAATTA
* * *
194 ATTTGTAATTAATTCGAAACAAGATTCAGATGATCGTAAAAAACAAATCCATAAATCCATTGTGG
190 ATTTCTAATTAAATCGAAACAAGATTCAGATGATCGT-AAAAACAAATCCTTAAATCCATTGTGG
** *
259 CTGAGATTTGGGATGATTAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATGCAAAATT
254 CTGAGATTTGTTA-GATTAATATAGATATTTCAATGAGTCTTG-CGCCAAAAATCATGCAAAACT
*
324 GAGCCGGGGCCCCA
317 GAGCCGGGGCCCCG
* * *
338 GAACGCGATTTTAGCCAAAAACCGT-A----ACGTACACGATTTCAGCAAAAATTTTG-AAAATA
1 GAACGCGTTTTTAGCCAAAAACCGTGATGGTA-GTACACGATTTCGGCAAAAAATTTGCAAAA-A
* *
397 TTGACCCGAAAGATATTTCATCAATTTTTAACCGCAATATTCGTAAAAAATATATAATTCAACGC
64 TTGACCCGAAAGATTTTTCATCAATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACGC
* * * * * *
462 AAAAAATATTGAAAGGCTTGTCACACTTCTAATATCATTTTTTCAACTCTTTCCCGAATTAATTT
129 CAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTTTCCCGAATTAATTT
* *
527 CTCATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAT
194 CTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAG
* *
592 ATTTGTTTAGTTTAATATAGATATTTCAATGAGTCTTAGCGCCAAAAATCATGCAAAACTGAGTC
259 ATTTG-TTAGATTAATATAGATATTTCAATGAGTCTT-GCGCCAAAAATCATGCAAAACTGAGCC
***
657 GGGGTTTCG
322 GGGGCCCCG
* *
666 GAACGTGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCAAAAAATTTGCAAATAT
1 GAACGCGTTTTTAGCCAAAAACCGTGATGG-TAGTACACGATTTCGGCAAAAAATTTGCAAAAAT
* * * *
731 TTACCCGAAAGATTTTTCATCAATTTCTAACCGCTATACTCGTAAAATATATATAATTCAACGCC
65 TGACCCGAAAGATTTTTCATCAATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACGCC
* * *
796 AAAAAGATAGAAGGGCTTTTCACGCTTCTAATATCATTTGTTAAATTCTTTCCCGAATTAATTTC
130 AAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTTTCCCGAATTAATTTC
* * * *
861 TAATTAAATAGAAACAAGATTCTGATGATCGTAAAAACAAATCCATAAATCCATTGTCGCTGAGA
195 TAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGA
** * *
926 TTTGGGATGATTAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCTTGCAAAACTGAAGCT
260 TTTGTTA-GATTAATATAGATATTTCAATGAGTCTT-GCGCCAAAAATCATGCAAAACTG-AGCC
* *
991 GGTGTCCCG
322 GGGGCCCCG
* * * * *
1000 GAACACGTTTTTAGCCAAAAACTGTGATAGTTAGTACACGATTTCAGCAAAAATTTTGCAAAAAT
1 GAACGCGTTTTTAGCCAAAAACCGTGAT-GGTAGTACACGATTTCGGCAAAAAATTTGCAAAAAT
* * * * *
1065 TGATCCGAAAGACTTTTC-CCTAATTTTTAACCACAATACTCGT-AAAAATATATAATTCTACGC
65 TGACCCGAAAGATTTTTCATC-AATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACGC
*
1128 CAAAAAGATTGAAGGGCTTTTCACTCTTCTAATAT-AGTTTTTTCAATTCTTTCCCGAATTAATT
129 CAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCA-TTTTTTCAATTCTTTCCCGAATTAATT
** * * *
1192 TCTAATTAAAGAGAAACAAGATTCTGATGATCGTAAAAACAAATCCATAAGTCCATTGTGGCTGA
193 TCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATCCATTGTGGCTGA
** * * **
1257 GATTTGGGATGATTAATATAGATATTTCAATGAGTCTTGGCACCAAAAATCATGTAAAACCAAGC
258 GATTTGTTA-GATTAATATAGATATTTCAATGAGTCTT-GCGCCAAAAATCATGCAAAACTGAGC
1322 CGGGG-CCCG
321 CGGGGCCCCG
* * *
1331 GAACGCGTTTTTAACC--AAA-----ATCGT-G-ACACGATTTCGGCAAAAAATTTGCAAATATT
1 GAACGCGTTTTTAGCCAAAAACCGTGATGGTAGTACACGATTTCGGCAAAAAATTTGCAAAAATT
*
1387 GACCCGAAAGATTTTTCATCAATTTTTAACCGCAATACTCATAAAAAATATATAATTCAACGCCA
66 GACCCGAAAGATTTTTCATCAATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACGCCA
* *
1452 AAAAGAATGAAGGGTTTTTCACGCTTCTAATATCATTTTTTCAATTCTTTCCCGAATTAATTTCT
131 AAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTTTCCCGAATTAATTTCT
* ** **
1517 AATTAAATAGAAACAAGATTTTGATGATCGTAAAAACAAATCAATAAATCCATTGTGGCTGAGAT
196 AATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGAT
** **
1582 TTGGGATGATTAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACCAAGCCGG
261 TTGTTA-GATTAATATAGATATTTCAATGAGTCTT-GCGCCAAAAATCATGCAAAACTGAGCCGG
*
1647 GGCCCTG
324 GGCCCCG
* * *
1654 GAATGCGTTTTTAGCCAAAAACCGTGATGGTCAGTACACGATTTCGGCAAAAATTTTGCAAATAT
1 GAACGCGTTTTTAGCCAAAAACCGTGATGGT-AGTACACGATTTCGGCAAAAAATTTGCAAAAAT
1719 TGACCCGAAAGATTTTTCATCAATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACGCC
65 TGACCCGAAAGATTTTTCATCAATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACGCC
* * * *
1784 AAAATGATTGAAGAGCTTTTCAAGTTTCTAATATCATTTTTTTCAATTCTTTCCCGAATTAATTT
130 AAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCA-TTTTTTCAATTCTTTCCCGAATTAATTT
* * *
1849 CTAATTAAATAGAAACAAGATTCTGATGATCGTAAAAACAAATCCATAAATCCATTGTGGCTGAG
194 CTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAG
** *
1914 ATTTTAGGAAGATTAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATCCAAAACTGAGC
259 A-TTT-GTTAGATTAATATAGATATTTCAATGAGTCTTG-CGCCAAAAATCATGCAAAACTGAGC
1979 CGGGGCCCCCG
321 CGGGG-CCCCG
*** * *
1990 GAACATATTTTTAGCCAAAAACCGTGATGGTA-CAC-CGATTTCGGCAAAAATTTTGCAAAAATT
1 GAACGCGTTTTTAGCCAAAAACCGTGATGGTAGTACACGATTTCGGCAAAAAATTTGCAAAAATT
* * *
2053 GATCCGAAAGATTTTTCCTTAATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACGCCA
66 GACCCGAAAGATTTTTCATCAATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACGCCA
* * * *
2118 AAAAGATTGAAGGGCTTTTCACGCTTCTAATATTATTTTTCCATTTGTTT-CCGAATTAATTTCT
131 AAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTTTCCCGAATTAATTTCT
* * * * * *
2182 AATTAAAT-GAAAACAAGATTGAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTTACA
196 AATTAAATCG-AAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGA
* * * * * * *
2246 TTTGGTTCGATGAATAAAGATATTTCAAGGAGTCTTTGTGCCAAAAAT-ACTTCAAAATTGAGCC
260 TTT-GTTAGATTAATATAGATATTTCAATGAGTC-TTGCGCCAAAAATCA-TGCAAAACTGAGCC
** *
2310 GGCTCTCCG
322 GGGGCCCCG
* *
2319 GAACGCGTTTTTAGCC---AA-----A----A--AC-C-ATTTCGGCTAAAATTTTGCAAAAATT
1 GAACGCGTTTTTAGCCAAAAACCGTGATGGTAGTACACGATTTCGGCAAAAAATTTGCAAAAATT
* * * ** ** *
2368 GACCCCAAAAATTTTTCCTCAATTTTTTGCCAG-AATACTCAGT-TTAAATATGTAATTCAACGC
66 GACCCGAAAGATTTTTCATCAATTTTTAACC-GCAATACTC-GTAAAAAATATATAATTCAACGC
* * * ** ** * **
2431 CAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTCCCTTTTTCTTTCCCAAATTTTTT
129 CAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTC-AATTCTTTCCCGAATTAATT
* * * * * * *
2496 TCTTATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACCAATTCTTAAGTCCAATGTTGCTGA
193 TCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATCCATTGTGGCTGA
* * * * * * * *
2561 GATTTAATTAGATAAATATAAATATTTTAAGGAGTCTTTCTGCCTAAAATCATGCAAAACTGAGT
258 GATTT-GTTAGATTAATATAGATATTTCAATGAGTCTTGC-GCCAAAAATCATGCAAAACTGAGC
2626 CGGGGCCCC-
321 CGGGGCCCCG
* * **
2635 -AACACGTTTTTTAGCCAAAAAAAACCGTGATGG--GTGCACGATTTCGG-TTAAAATTT-CGAA
1 GAACGCG-TTTTTAGCC---AAAAACCGTGATGGTAGTACACGATTTCGGCAAAAAATTTGC-AA
* ** ** * *
2695 AAACTGACCCGAAA-ATTTTTTTC-TCAATTTTTTGCCATAATAGTCAG-AAAAAATATATAACT
61 AAATTGACCCGAAAGA--TTTTTCATCAATTTTTAACCGCAATACTC-GTAAAAAATATATAATT
* * ** * * * *
2757 CAACACCAAAAA-AGTAGAAGGATTTTTCACGCTTCTATTATCA-TTTTTCCATTTTTTTCCGAA
123 CAACGCCAAAAAGA-TTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTTTCCCGAA
* * * * * *
2820 TTTATTTCTAATTAAATCGAAAAAAGATTTAGATGCTCGTAAAAACAAAT-CTGTGAATCCAATG
187 TTAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCT-TAAATCCATTG
* * * * * *
2884 TAGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGATTCTTTCTACCAAAAATCATGCAAA
251 TGGCTGAGATTT-GTTAGATTAATATAGATATTTCAATGAGTCTTGC-GCCAAAAATCATGCAAA
*
2949 ACTGAACCGGGGCCCCG
314 ACTGAGCCGGGGCCCCG
* * ** * * **
2966 AAACGCGTTTTTAGCAAAAAACCGT-AACGT-GTACACGATTTCGGCTAAAAA----C-TAACCT
1 GAACGCGTTTTTAGCCAAAAACCGTGATGGTAGTACACGATTTCGGCAAAAAATTTGCAAAAATT
** ** * **
3024 GA----AAATTTTTTTTC-TCAATTTTTTGCCACAATACTTATAAAAAAATATATAATTCAACGC
66 GACCCGAAA-GATTTTTCATCAATTTTTAACCGCAATACTCGT-AAAAAATATATAATTCAACGC
* * ** ** * * * * *
3084 CAAAAATATTGACGGGCTTTTCGGGCTTCTAATATC-GGTATTCCATTTTTTTCCAAATTAATTT
129 CAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTTTCCCGAATTAATTT
* * * *
3148 CTAATTAAATCGAAACAAAATTCAGAAGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
194 CTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAG
* * * * * * *
3213 ATTTGGTTCGATGAATATAGATATTTCAAGGAGTTTTTGCGCCAAAAATCATGTAAAATTGAGTC
259 ATTT-GTTAGATTAATATAGATATTTCAATGAG-TCTTGCGCCAAAAATCATGCAAAACTGAGCC
* * *
3278 GTGACTCCG
322 GGGGCCCCG
* *
3287 GAACGCGTTTTTAGCC-AAAACC---------GT----GATTTCGGCTAAAATTTTGCAAAAAAA
1 GAACGCGTTTTTAGCCAAAAACCGTGATGGTAGTACACGATTTCGGCAAAAAATTTGC--AAAAA
* * * *
3338 CTGACCCGATAAG--TTTTCCTCAATTTTT-GCCACAAATTACTCAG-AAAAAATATATAATTCA
64 TTGACCCGA-AAGATTTTTCATCAATTTTTAACCGC-AA-TACTC-GTAAAAAATATATAATTC-
* * * * * ** * *
3399 AACGCCCAAAATATTGAAAGTGTTTTTCACGCTTCTAATATC--GTTTTCCTTTTTTTCCGGAAT
124 AACGCCAAAAAGATTG-AAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTTTCCCGAAT
* * * * *
3462 TTATTT-TAATAAAATCAAAACAAGATTCAGATGCTCGT-AAAA-AAATCCTTAAATCCAATGTG
188 TAATTTCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATCCATTGTG
* * * * ** *
3524 GCTGATATTTGGTTACATGAATATAGATATTTCAAGGAGTCTGTATGCCAAAAACCATGCAAAAC
253 GCTGAGATTT-GTTAGATTAATATAGATATTTCAATGAGTCT-TGCGCCAAAAATCATGCAAAAC
* * *
3589 TGAG-TGAAGGCCTCG
316 TGAGCCG-GGGCCCCG
* * * *
3604 GAACGCGTTTTTACCCAAAAACAGTGATATGGTAATACACGATTTCGGCTAAAAA
1 GAACGCGTTTTTAGCCAAAAACCGTG--ATGGTAGTACACGATTTCGGCAAAAAA
3659 CTGATACAAA
Statistics
Matches: 2846, Mismatches: 354, Indels: 246
0.83 0.10 0.07
Matches are distributed among these distances:
309 14 0.00
313 3 0.00
315 118 0.04
316 32 0.01
317 212 0.07
318 21 0.01
319 55 0.02
320 75 0.03
321 282 0.10
322 218 0.08
323 19 0.01
324 8 0.00
325 3 0.00
326 3 0.00
327 7 0.00
328 162 0.06
329 154 0.05
330 203 0.07
331 109 0.04
332 116 0.04
333 717 0.25
334 197 0.07
335 60 0.02
336 35 0.01
337 23 0.01
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.32
Consensus pattern (330 bp):
GAACGCGTTTTTAGCCAAAAACCGTGATGGTAGTACACGATTTCGGCAAAAAATTTGCAAAAATT
GACCCGAAAGATTTTTCATCAATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACGCCA
AAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTTTCCCGAATTAATTTCT
AATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGAT
TTGTTAGATTAATATAGATATTTCAATGAGTCTTGCGCCAAAAATCATGCAAAACTGAGCCGGGG
CCCCG
Found at i:2322 original size:988 final size:982
Alignment explanation
Indices: 1--3658 Score: 3987
Period size: 988 Copynumber: 3.7 Consensus size: 982
* * * *
1 GAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTTACAACGATTTCGACAAAAAATCTTTGCAA
1 GAACACGTTTTTAGCCAAAAACCGTGATAG-T-G-TAC-ACGATTTCGGCAAAAAAT-TTTGCAA
* * *
66 AAATTGACCCGAAATATTTTT-CTTCAA-TTTTAACCGCAATACTCATAAAAAATATATAATTCA
61 AAATTGATCCGAAAGATTTTTCCTT-AATTTTTAACCACAATACTCATAAAAAATATATAATTCA
* * * *
129 AAGCCAAAAAGATTGAAGAGATTTTCACGCTT-TCAATATCATTTTTTCAATTCTTTCCCGAATT
125 ACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCT-AATATCATTTTTCCAATTCTTTCCCGAATT
* * *
193 AATTTGTAATTAATTCGAAACAAGATTCAGATGATCGTAAAAAACAAATCCATAAATCCATTGTG
189 AATTTCTAATTAAATCGAAACAAGATTCAGATGATCGT-AAAAACAAATCCATAAATCCAATGTG
* * *
258 GCTGAGATTTGGGATGATTAATATAGATATTTCAATGAGTC-TTGACGCCAAAAATCATGCAAAA
253 GCTGAGATTTGGGATGATGAATATAGATATTTCAAGGAGTCTTTG-CGCCAAAAATCATGTAAAA
* * * *
322 TTGAGCCGGGGCCCCAGAACGCGATTTTAGCCAAAAACCGTAACGTACACGATTTCAGCAAAAAT
317 TTGAGCCGGGGCTCCGGAACGCGTTTTTAGCC-AAAA-C----CGTAC-CGATTTCGGCAAAAAT
* * *
387 TTTG-AAAATATTGACCCGAAAGATATTTCATCAATTTTTAACCGCAATATTCGTAAAAAATATA
375 TTTGCAAAA-ATTGACCCGAAAGATTTTTCATCAATTTTTAACCGCAATACTCATAAAAAATATA
* * * * * * *
451 TAATTCAACGCAAAAAATATTGAAAGGCTTGTCACACTTCTAATATCATTTTTTCAACTCTTTCC
439 TAATTCAACGCCAAAAATAATGAAGGGTTTTTCACGCTTCTAATATCATTTTTTCAATTCTTTCC
* *
516 CGAATTAATTTCTCATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATCCA
504 CGAATTAATTTCTAATTAAATAGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATCCA
* * ** * * *
581 TTGTGGCTGATATTTGTTTAGTTTAATATAGATATTTCAATGAGTCTTAGCGCCAAAAATCATGC
569 ATGTGGCTGAGATTTGGATAGATTAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGC
** *
646 AAAACTGAGTCGGGGTTTCGGAACGTGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
634 AAAACTGAGTCGGGGCCTCGGAACGCGTTTTTAGCCAAAAACCGTGATGG-TAGTACACGATTTC
* * * *
711 GGCAAAAAATTTGCAAATATTTACCCGAAAGATTTTTCATCAATTTCTAACCGCTATACTCGTAA
698 GGCAAAAATTTTGCAAATATTGACCCGAAAGATTTTTCATCAATTTTTAACCGCAATACTCGTAA
* * *
776 AATATATATAATTCAACGCCAAAAAGATAGAAGGGCTTTTCACGCTTCTAATATCATTTGTTAAA
763 AAAATATATAATTCAACGCC-AAAAGATAGAA-GGCTTTTCACGCTTCTAATATCATTTTTTCAA
841 TTCTTTCCCGAATTAATTTCTAATTAAATAGAAACAAGATTCTGATGATCGTAAAAACAAATCCA
826 TTCTTTCCCGAATTAATTTCTAATTAAATAGAAACAAGATTCTGATGATCGTAAAAACAAATCCA
* * *
906 TAAATCCATTGTCGCTGAGATTTGGGATGATTAATATAGATATTTCAATGAGTCTTGGCGCCAAA
891 TAAATCCATTGTAGCTGAGATTT-GGAAGATTAATATAGATATTTCAATGAGTCTTGACGCCAAA
* * * *
971 AATCTTGCAAAACTGAAGCTGGTGTCCCG
955 AATCATGCAAAACTG-AGCCGGGGCCCCG
* *
1000 GAACACGTTTTTAGCCAAAAACTGTGATAGTTAGTACACGATTTCAGC-AAAAATTTTGCAAAAA
1 GAACACGTTTTTAGCCAAAAACCGTGATAG-T-GTACACGATTTCGGCAAAAAATTTTGCAAAAA
* * * *
1064 TTGATCCGAAAGACTTTTCCCTAATTTTTAACCACAATACTCGT-AAAAATATATAATTCTACGC
64 TTGATCCGAAAGATTTTTCCTTAATTTTTAACCACAATACTCATAAAAAATATATAATTCAACGC
* *
1128 CAAAAAGATTGAAGGGCTTTTCACTCTTCTAATAT-AGTTTTTTCAATTCTTTCCCGAATTAATT
129 CAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCA-TTTTTCCAATTCTTTCCCGAATTAATT
** * * *
1192 TCTAATTAAAGAGAAACAAGATTCTGATGATCGTAAAAACAAATCCATAAGTCCATTGTGGCTGA
193 TCTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCATAAATCCAATGTGGCTGA
* * * * ***
1257 GATTTGGGATGATTAATATAGATATTTCAATGAGTCTTGGCACCAAAAATCATGTAAAACCAAGC
258 GATTTGGGATGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGTAAAATTGAGC
* * * *
1322 CGGGGC-CCGGAACGCGTTTTTAACCAAAATCGTGACACGATTTCGGCAAAAAATTTGCAAATAT
323 CGGGGCTCCGGAACGCGTTTTTAGCCAAAACCGT-AC-CGATTTCGGCAAAAATTTTGCAAAAAT
1386 TGACCCGAAAGATTTTTCATCAATTTTTAACCGCAATACTCATAAAAAATATATAATTCAACGCC
386 TGACCCGAAAGATTTTTCATCAATTTTTAACCGCAATACTCATAAAAAATATATAATTCAACGCC
*
1451 AAAAAGAATGAAGGGTTTTTCACGCTTCTAATATCATTTTTTCAATTCTTTCCCGAATTAATTTC
451 AAAAATAATGAAGGGTTTTTCACGCTTCTAATATCATTTTTTCAATTCTTTCCCGAATTAATTTC
** ** *
1516 TAATTAAATAGAAACAAGATTTTGATGATCGTAAAAACAAATCAATAAATCCATTGTGGCTGAGA
516 TAATTAAATAGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGA
* ** *
1581 TTTGGGAT-GATTAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACCAAGCC
581 TTT-GGATAGATTAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGTC
*
1645 GGGGCC-CTGGAATGCGTTTTTAGCCAAAAACCGTGATGGTCAGTACACGATTTCGGCAAAAATT
645 GGGGCCTC-GGAACGCGTTTTTAGCCAAAAACCGTGATGGT-AGTACACGATTTCGGCAAAAATT
1709 TTGCAAATATTGACCCGAAAGATTTTTCATCAATTTTTAACCGCAATACTCGTAAAAAATATATA
708 TTGCAAATATTGACCCGAAAGATTTTTCATCAATTTTTAACCGCAATACTCGTAAAAAATATATA
* * *
1774 ATTCAACGCCAAAATGATTGAAGAGCTTTTCAAGTTTCTAATATCATTTTTTTCAATTCTTTCCC
773 ATTCAACGCCAAAA-GATAGAAG-GCTTTTCACGCTTCTAATATCA-TTTTTTCAATTCTTTCCC
1839 GAATTAATTTCTAATTAAATAGAAACAAGATTCTGATGATCGTAAAAACAAATCCATAAATCCAT
835 GAATTAATTTCTAATTAAATAGAAACAAGATTCTGATGATCGTAAAAACAAATCCATAAATCCAT
* *
1904 TGTGGCTGAGATTTTAGGAAGATTAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATCC
900 TGTAGCTGAGA-TTT-GGAAGATTAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATGC
1969 AAAACTGAGCCGGGGCCCCCG
963 AAAACTGAGCCGGGG-CCCCG
**
1990 GAACATATTTTTAGCCAAAAACCGTGAT-G-GTACACCGATTTCGGC-AAAAATTTTGCAAAAAT
1 GAACACGTTTTTAGCCAAAAACCGTGATAGTGTACA-CGATTTCGGCAAAAAATTTTGCAAAAAT
* *
2052 TGATCCGAAAGATTTTTCCTTAATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACGCC
65 TGATCCGAAAGATTTTTCCTTAATTTTTAACCACAATACTCATAAAAAATATATAATTCAACGCC
* * *
2117 AAAAAGATTGAAGGGCTTTTCACGCTTCTAATATTATTTTTCCATTTGTTT-CCGAATTAATTTC
130 AAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTCCAATTCTTTCCCGAATTAATTTC
* * * * * *
2181 TAATTAAAT-GAAAACAAGATTGAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTTAC
195 TAATTAAATCG-AAACAAGATTCAGATGATCGTAAAAACAAATCCATAAATCCAATGTGGCTGAG
* * *
2245 ATTT-GGTTCGATGAATAAAGATATTTCAAGGAGTCTTTGTGCCAAAAAT-ACT-TCAAAATTGA
259 ATTTGGGAT-GATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCA-TGT-AAAATTGA
** *
2307 GCCGGCTCTCCGGAACGCGTTTTTAGCCAAAA----ACC-ATTTCGGCTAAAATTTTGCAAAAAT
321 GCCGGGGCTCCGGAACGCGTTTTTAGCCAAAACCGTACCGATTTCGGCAAAAATTTTGCAAAAAT
* * * ** ** *
2367 TGACCCCAAAAATTTTTCCTCAATTTTTTGCCAG-AATACTCAGT-TTAAATATGTAATTCAACG
386 TGACCCGAAAGATTTTTCATCAATTTTTAACC-GCAATACTCA-TAAAAAATATATAATTCAACG
* ** ** * **
2430 CCAAAAA-AATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTCCCTTTTTCTTTCCCAAATTTT
449 CCAAAAATAA-TGAAGGGTTTTTCACGCTTCTAATATCATTTTTTC-AATTCTTTCCCGAATTAA
* * * * * * *
2494 TTTCTTATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACCAATTCTTAAGTCCAATGTTGCT
512 TTTCTAATTAAATAGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCT
* * * * * *
2559 GAGATTT-AATTAGATAAATATAAATATTTTAAGGAGTCTT-TCTGCCTAAAATCATGCAAAACT
577 GAGATTTGGA-TAGATTAATATAGATATTTCAAGGAGTCTTGGC-GCCAAAAATCATGCAAAACT
* * * *
2622 GAGTCGGGGCC-C-CAACACGTTTTTTAGCCAAAAAAAACCGTGATGG--GTGCACGATTTCGGT
640 GAGTCGGGGCCTCGGAACGCG-TTTTTAGCC---AAAAACCGTGATGGTAGTACACGATTTCGGC
* * * * ** ** *
2683 TAAAATTTCG-AAAAACTGACCCGAAA-ATTTTTTTC-TCAATTTTTTGCCATAATAGTCAG-AA
701 AAAAATTTTGCAAATATTGACCCGAAAGA--TTTTTCATCAATTTTTAACCGCAATACTC-GTAA
* * * * * *
2744 AAAATATATAACTCAACACCAAAAAAGTAGAAGGATTTTTCACGCTTCTATTATCA-TTTTTCCA
763 AAAATATATAATTCAACGCCAAAAGA-TAGAAGG-CTTTTCACGCTTCTAATATCATTTTTTCAA
* * * * * * *
2808 TTTTTTTCCGAATTTATTTCTAATTAAATCGAAAAAAGATT-TAGATGCTCGTAAAAACAAATCT
826 TTCTTTCCCGAATTAATTTCTAATTAAATAGAAACAAGATTCT-GATGATCGTAAAAACAAATCC
* * * * * * * * *
2872 GTGAATCCAATGTAGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGATTCTT-TCTACCA
890 ATAAATCCATTGTAGCTGAGATTTGG-AAGATTAATATAGATATTTCAATGAGTCTTGAC-GCCA
*
2936 AAAATCATGCAAAACTGAACCGGGGCCCCG
953 AAAATCATGCAAAACTGAGCCGGGGCCCCG
* * * * * **
2966 AAACGCGTTTTTAGCAAAAAACCGT-A-ACGTGTACACGATTTCGGCTAAAAA-----C-TAACC
1 GAACACGTTTTTAGCCAAAAACCGTGATA-GTGTACACGATTTCGGCAAAAAATTTTGCAAAAAT
** * * ** *
3023 TGA----AAATTTTTTTTCTCAATTTTTTGCCACAATACTTATAAAAAAATATATAATTCAACGC
65 TGATCCGAAAGATTTTTCCTTAATTTTTAACCACAATACTCAT-AAAAAATATATAATTCAACGC
* * ** ** * * * *
3084 CAAAAATATTGACGGGCTTTTCGGGCTTCTAATATCGGTATTCC-ATTTTTTTCCAAATTAATTT
129 CAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTCCAATTCTTTCCCGAATTAATTT
* * * *
3148 CTAATTAAATCGAAACAAAATTCAGAAGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
194 CTAATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCATAAATCCAATGTGGCTGAG
* * *
3213 ATTT-GGTTCGATGAATATAGATATTTCAAGGAGTTTTTGCGCCAAAAATCATGTAAAATTGAGT
259 ATTTGGGAT-GATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGTAAAATTGAGC
* * * *
3277 CGTGACTCCGGAACGCGTTTTTAGCCAAAACCGT---GATTTCGGCTAAAATTTTGCAAAAAAAC
323 CGGGGCTCCGGAACGCGTTTTTAGCCAAAACCGTACCGATTTCGGCAAAAATTTTGC--AAAAAT
* * * *
3339 TGACCCGATAAG--TTTTCCTCAATTTTT-GCCACAAATTACTCAGAAAAAATATATAATTCAAA
386 TGACCCGA-AAGATTTTTCATCAATTTTTAACCGC-AA-TACTCATAAAAAATATATAATTC-AA
* * * * ** * * *
3401 CGCCCAAAATATTGAAAGTGTTTTTCACGCTTCTAATATC--GTTTTCCTTTTTTTCCGGAATTT
447 CGCCAAAAATAATG-AAGGGTTTTTCACGCTTCTAATATCATTTTTTCAATTCTTTCCCGAATTA
* *
3464 ATTT-TAATAAAATCA-AAACAAGATTCAGATGCTCGT-AAAA-AAATCCTTAAATCCAATGTGG
511 ATTTCTAATTAAAT-AGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATCCAATGTGG
* * * * ** *
3525 CTGATATTTGGTTACATGAATATAGATATTTCAAGGAGTC-TGTATGCCAAAAACCATGCAAAAC
575 CTGAGATTTGGATAGATTAATATAGATATTTCAAGGAGTCTTG-GCGCCAAAAATCATGCAAAAC
* * * *
3589 TGAGT-GAAGGCCTCGGAACGCGTTTTTACCCAAAAACAGTGATATGGTAATACACGATTTCGGC
639 TGAGTCG-GGGCCTCGGAACGCGTTTTTAGCCAAAAACCGTG--ATGGTAGTACACGATTTCGGC
3653 TAAAAA
701 -AAAAA
3659 CTGATACAAA
Statistics
Matches: 2292, Mismatches: 289, Indels: 184
0.83 0.10 0.07
Matches are distributed among these distances:
966 9 0.00
967 34 0.01
968 287 0.13
969 16 0.01
970 67 0.03
971 42 0.02
972 34 0.01
973 14 0.01
974 25 0.01
975 1 0.00
976 39 0.02
977 66 0.03
978 79 0.03
979 3 0.00
980 84 0.04
981 151 0.07
982 128 0.06
983 2 0.00
984 14 0.01
986 11 0.00
987 191 0.08
988 493 0.22
989 104 0.05
990 84 0.04
992 4 0.00
993 16 0.01
994 93 0.04
995 133 0.06
996 26 0.01
997 9 0.00
998 3 0.00
999 30 0.01
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.32
Consensus pattern (982 bp):
GAACACGTTTTTAGCCAAAAACCGTGATAGTGTACACGATTTCGGCAAAAAATTTTGCAAAAATT
GATCCGAAAGATTTTTCCTTAATTTTTAACCACAATACTCATAAAAAATATATAATTCAACGCCA
AAAAGATTGAAGGGCTTTTCACGCTTCTAATATCATTTTTCCAATTCTTTCCCGAATTAATTTCT
AATTAAATCGAAACAAGATTCAGATGATCGTAAAAACAAATCCATAAATCCAATGTGGCTGAGAT
TTGGGATGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGTAAAATTGAGCCGG
GGCTCCGGAACGCGTTTTTAGCCAAAACCGTACCGATTTCGGCAAAAATTTTGCAAAAATTGACC
CGAAAGATTTTTCATCAATTTTTAACCGCAATACTCATAAAAAATATATAATTCAACGCCAAAAA
TAATGAAGGGTTTTTCACGCTTCTAATATCATTTTTTCAATTCTTTCCCGAATTAATTTCTAATT
AAATAGAAACAAGATTCAGATGATCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGG
ATAGATTAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGTCGGGGCC
TCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTAGTACACGATTTCGGCAAAAATTTTGCAAAT
ATTGACCCGAAAGATTTTTCATCAATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACG
CCAAAAGATAGAAGGCTTTTCACGCTTCTAATATCATTTTTTCAATTCTTTCCCGAATTAATTTC
TAATTAAATAGAAACAAGATTCTGATGATCGTAAAAACAAATCCATAAATCCATTGTAGCTGAGA
TTTGGAAGATTAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATGCAAAACTGAGCCGG
GGCCCCG
Found at i:4751 original size:29 final size:29
Alignment explanation
Indices: 4718--4784 Score: 125
Period size: 29 Copynumber: 2.3 Consensus size: 29
4708 TTTCATGACT
4718 ATAAATAATAATATTATATATTATAATCG
1 ATAAATAATAATATTATATATTATAATCG
4747 ATAAATAATAATATTATATATTATAATCG
1 ATAAATAATAATATTATATATTATAATCG
*
4776 AAAAATAAT
1 ATAAATAAT
4785 TATTAGAAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (29 bp):
ATAAATAATAATATTATATATTATAATCG
Found at i:4938 original size:30 final size:31
Alignment explanation
Indices: 4888--4945 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
4878 CATAATTAAT
*
4888 AAAAAAGTTGAATCATCTAAAAAAAATAAAA
1 AAAAAAGTTAAATCATCTAAAAAAAATAAAA
* *
4919 AAAAAAGTTAAATGA-CTAAAAAGAATA
1 AAAAAAGTTAAATCATCTAAAAAAAATA
4946 CTTATTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 11 0.46
31 13 0.54
ACGTcount: A:0.67, C:0.05, G:0.09, T:0.19
Consensus pattern (31 bp):
AAAAAAGTTAAATCATCTAAAAAAAATAAAA
Found at i:13165 original size:23 final size:26
Alignment explanation
Indices: 13125--13179 Score: 80
Period size: 24 Copynumber: 2.2 Consensus size: 26
13115 AGGATGAACT
13125 TTTTTGTATAGAATATAGAATT-CTC
1 TTTTTGTATAGAATATAGAATTACTC
*
13150 TTTTTGT-TA-AATATAGTATTACTC
1 TTTTTGTATAGAATATAGAATTACTC
13174 TTTTTG
1 TTTTTG
13180 GACAATAATG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 10 0.36
24 11 0.39
25 7 0.25
ACGTcount: A:0.27, C:0.07, G:0.11, T:0.55
Consensus pattern (26 bp):
TTTTTGTATAGAATATAGAATTACTC
Found at i:13376 original size:19 final size:19
Alignment explanation
Indices: 13352--13416 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 19
13342 TACAGAAAGG
13352 CAATAATTTTTGCATAGTA
1 CAATAATTTTTGCATAGTA
*
13371 CAATAATTTTT-C-TCAAT-
1 CAATAATTTTTGCAT-AGTA
*
13388 TAA-AA-TTTTGCATAGTA
1 CAATAATTTTTGCATAGTA
13405 CAATAATTTTTG
1 CAATAATTTTTG
13417 GAGTTTAGCA
Statistics
Matches: 36, Mismatches: 4, Indels: 12
0.69 0.08 0.23
Matches are distributed among these distances:
15 4 0.11
16 5 0.14
17 6 0.17
18 5 0.14
19 16 0.44
ACGTcount: A:0.37, C:0.11, G:0.08, T:0.45
Consensus pattern (19 bp):
CAATAATTTTTGCATAGTA
Found at i:24636 original size:32 final size:33
Alignment explanation
Indices: 24598--24677 Score: 117
Period size: 34 Copynumber: 2.4 Consensus size: 33
24588 ACGGAGGGGG
**
24598 CAAATTGTTTTGA-ATTTGGGAAGTTCAGGAAA
1 CAAATTGTCATGATATTTGGGAAGTTCAGGAAA
*
24630 CAAATTGTCATGATTTTTTGGGAAGTTCAGGAAA
1 CAAATTGTCATGA-TATTTGGGAAGTTCAGGAAA
24664 CAAATTGTCATGAT
1 CAAATTGTCATGAT
24678 TTTTTTGTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
32 11 0.26
33 1 0.02
34 31 0.72
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.35
Consensus pattern (33 bp):
CAAATTGTCATGATATTTGGGAAGTTCAGGAAA
Found at i:24653 original size:34 final size:34
Alignment explanation
Indices: 24612--24682 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
24602 TTGTTTTGAA
24612 TTTGGGAAGTTCAGGAAACAAATTGTCATGATTT
1 TTTGGGAAGTTCAGGAAACAAATTGTCATGATTT
24646 TTTGGGAAGTTCAGGAAACAAATTGTCATGATTT
1 TTTGGGAAGTTCAGGAAACAAATTGTCATGATTT
24680 TTT
1 TTT
24683 TGTTTAGAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (34 bp):
TTTGGGAAGTTCAGGAAACAAATTGTCATGATTT
Found at i:32357 original size:3 final size:3
Alignment explanation
Indices: 32351--32382 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
32341 AATCTTCTTA
32351 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
32383 CGAATGAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:32900 original size:16 final size:16
Alignment explanation
Indices: 32879--32910 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
32869 ACTACTCAAT
32879 GGGTTCTTTCTTTTTA
1 GGGTTCTTTCTTTTTA
32895 GGGTTCTTTCTTTTTA
1 GGGTTCTTTCTTTTTA
32911 TTTCACTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.12, G:0.19, T:0.62
Consensus pattern (16 bp):
GGGTTCTTTCTTTTTA
Found at i:40339 original size:23 final size:23
Alignment explanation
Indices: 40308--40358 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
40298 TTCCCTTGAG
* *
40308 AAAGGAAGGCATTGGTGTGTTCT
1 AAAGTAAGGCATTGGTGTATTCT
*
40331 AAAGTAAGGTATTGGTGTATTCT
1 AAAGTAAGGCATTGGTGTATTCT
40354 AAAGT
1 AAAGT
40359 GTTATATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.06, G:0.29, T:0.33
Consensus pattern (23 bp):
AAAGTAAGGCATTGGTGTATTCT
Found at i:40422 original size:37 final size:37
Alignment explanation
Indices: 40372--40445 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
40362 ATATTTATGC
*
40372 AATTATGCTTTGTCAATGTGTACAAGAAACAAATAAA
1 AATTATGCTTTGTCAATGTATACAAGAAACAAATAAA
*
40409 AATTATGCTTTGTCAATGTATACAAGAAACGAATAAA
1 AATTATGCTTTGTCAATGTATACAAGAAACAAATAAA
40446 CAAGTTTGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.30
Consensus pattern (37 bp):
AATTATGCTTTGTCAATGTATACAAGAAACAAATAAA
Found at i:53181 original size:12 final size:12
Alignment explanation
Indices: 53148--53180 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
53138 TCTTTGTTTC
53148 TTAATTTTTTAT
1 TTAATTTTTTAT
53160 TTAATTTTTTAT
1 TTAATTTTTTAT
53172 TT-ATTTTTT
1 TTAATTTTTT
53181 TGCTACTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.33
12 14 0.67
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
TTAATTTTTTAT
Found at i:61676 original size:17 final size:16
Alignment explanation
Indices: 61622--61681 Score: 57
Period size: 17 Copynumber: 3.6 Consensus size: 16
61612 TACTGGGCCA
* *
61622 CTCTCTCTCTCTCTCT
1 CTCTCTTTCTATCTCT
* *
61638 CTATCTATCTATCTCCT
1 CTCTCTTTCTATCT-CT
*
61655 TTCTCTTTCTATTCTCT
1 CTCTCTTTCTA-TCTCT
61672 CTCTCTTTCT
1 CTCTCTTTCT
61682 TAAACAAAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
16 11 0.31
17 21 0.60
18 3 0.09
ACGTcount: A:0.07, C:0.38, G:0.00, T:0.55
Consensus pattern (16 bp):
CTCTCTTTCTATCTCT
Found at i:63500 original size:34 final size:34
Alignment explanation
Indices: 63452--63529 Score: 120
Period size: 34 Copynumber: 2.2 Consensus size: 34
63442 ATTATATATT
* *
63452 ATTAGAGATTGAAATTCATTAAAGAGATGTTTAGAA
1 ATTAGA-A-TGAAATTCATTAAAGAGAGGTTTAAAA
63488 ATTAGAATGAAATTCATTAAAGAGAGGTTTAAAA
1 ATTAGAATGAAATTCATTAAAGAGAGGTTTAAAA
63522 ATTAGAAT
1 ATTAGAAT
63530 TCAAGATTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
34 33 0.82
35 1 0.03
36 6 0.15
ACGTcount: A:0.47, C:0.03, G:0.18, T:0.32
Consensus pattern (34 bp):
ATTAGAATGAAATTCATTAAAGAGAGGTTTAAAA
Found at i:70874 original size:30 final size:30
Alignment explanation
Indices: 70833--70893 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
70823 CGTCAAGTGC
70833 ATGTTGAGCTTGAACTTTCTT-CTGCCAATG
1 ATGTTGAGCTTGAAC-TTCTTCCTGCCAATG
*
70863 ATGTTGGGCTTGAACTTCTTCCTGCCAATG
1 ATGTTGAGCTTGAACTTCTTCCTGCCAATG
70893 A
1 A
70894 GAAATTAAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 5 0.17
30 24 0.83
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (30 bp):
ATGTTGAGCTTGAACTTCTTCCTGCCAATG
Found at i:78820 original size:39 final size:38
Alignment explanation
Indices: 78776--78859 Score: 114
Period size: 39 Copynumber: 2.2 Consensus size: 38
78766 CCAGTTTGGG
* * *
78776 TTGAATTCTCGTTTAGATGTTTGAGTATATAGATCTATT
1 TTGAATTCTCGCTTAGATGTTTGAGCATATAAATCTA-T
* *
78815 TTGAATTCTCGCTTAGATGTTTGGGCATATAAATTTAT
1 TTGAATTCTCGCTTAGATGTTTGAGCATATAAATCTAT
78853 TTGAATT
1 TTGAATT
78860 GTAATGAGAT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
38 8 0.20
39 32 0.80
ACGTcount: A:0.26, C:0.08, G:0.18, T:0.48
Consensus pattern (38 bp):
TTGAATTCTCGCTTAGATGTTTGAGCATATAAATCTAT
Found at i:80675 original size:50 final size:50
Alignment explanation
Indices: 80600--80749 Score: 300
Period size: 50 Copynumber: 3.0 Consensus size: 50
80590 TATTAGCATT
80600 AATTTACTTTGGAATTTAGTAATTGAATTTGAAAATCACTAATTCAACTC
1 AATTTACTTTGGAATTTAGTAATTGAATTTGAAAATCACTAATTCAACTC
80650 AATTTACTTTGGAATTTAGTAATTGAATTTGAAAATCACTAATTCAACTC
1 AATTTACTTTGGAATTTAGTAATTGAATTTGAAAATCACTAATTCAACTC
80700 AATTTACTTTGGAATTTAGTAATTGAATTTGAAAATCACTAATTCAACTC
1 AATTTACTTTGGAATTTAGTAATTGAATTTGAAAATCACTAATTCAACTC
80750 TATTAAAACT
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 100 1.00
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (50 bp):
AATTTACTTTGGAATTTAGTAATTGAATTTGAAAATCACTAATTCAACTC
Found at i:83964 original size:113 final size:114
Alignment explanation
Indices: 83772--83983 Score: 383
Period size: 113 Copynumber: 1.9 Consensus size: 114
83762 GAAAAAAATT
83772 ACTTTAATTAGGAATATTTTAATTATGTATATGTATTATAAAATTATATTTTGGTAGTTAATGGG
1 ACTTTAATTAGGAATATTTTAATTATG-ATATGTATTATAAAATTATATTTTGGTAGTTAATGGG
83837 AATATTTTGGTTTCATAGTCCTTTTCTTCAAACTCATATTATAAAATTTA
65 AATATTTTGGTTTCATAGTCCTTTTCTTCAAACTCATATTATAAAATTTA
*
83887 ACTTTAATTAGGAATATTTTAATTATG-TATGTATTATAAAATTA-ATTTTTGGTAGTTAATGTG
1 ACTTTAATTAGGAATATTTTAATTATGATATGTATTATAAAATTATA-TTTTGGTAGTTAATGGG
83950 AATATTTTGGTTTCATAGTCCTTTTCTTCAAACT
65 AATATTTTGGTTTCATAGTCCTTTTCTTCAAACT
83984 ATACATGAGT
Statistics
Matches: 95, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
112 1 0.01
113 67 0.71
115 27 0.28
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.49
Consensus pattern (114 bp):
ACTTTAATTAGGAATATTTTAATTATGATATGTATTATAAAATTATATTTTGGTAGTTAATGGGA
ATATTTTGGTTTCATAGTCCTTTTCTTCAAACTCATATTATAAAATTTA
Found at i:94717 original size:26 final size:26
Alignment explanation
Indices: 94681--94733 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
94671 ATATTCTCTA
94681 GCTAAAATTGAGCTGGATAATCGTGT
1 GCTAAAATTGAGCTGGATAATCGTGT
94707 GCTAAAATTGAGCTGGATAATCGTGT
1 GCTAAAATTGAGCTGGATAATCGTGT
94733 G
1 G
94734 GTGCAGGACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.11, G:0.28, T:0.30
Consensus pattern (26 bp):
GCTAAAATTGAGCTGGATAATCGTGT
Found at i:95153 original size:90 final size:90
Alignment explanation
Indices: 95054--95236 Score: 357
Period size: 90 Copynumber: 2.0 Consensus size: 90
95044 TTATTCGAGT
95054 CTTGCTACCATAAAAATCGGCTTAATGCCCAAAATCCCCCTTGAAGTATCACAAAGAGGACATTT
1 CTTGCTACCATAAAAATCGGCTTAATGCCCAAAATCCCCCTTGAAGTATCACAAAGAGGACATTT
95119 TGCCCCCAATCTTTTTTTGGTCCAA
66 TGCCCCCAATCTTTTTTTGGTCCAA
*
95144 CTTGTTACCATAAAAATCGGCTTAATGCCCAAAATCCCCCTTGAAGTATCACAAAGAGGACATTT
1 CTTGCTACCATAAAAATCGGCTTAATGCCCAAAATCCCCCTTGAAGTATCACAAAGAGGACATTT
95209 TGCCCCCAATCTTTTTTTGGTCCAA
66 TGCCCCCAATCTTTTTTTGGTCCAA
95234 CTT
1 CTT
95237 TGCCCTCTGA
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 92 1.00
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (90 bp):
CTTGCTACCATAAAAATCGGCTTAATGCCCAAAATCCCCCTTGAAGTATCACAAAGAGGACATTT
TGCCCCCAATCTTTTTTTGGTCCAA
Found at i:97366 original size:63 final size:63
Alignment explanation
Indices: 97293--97416 Score: 239
Period size: 63 Copynumber: 2.0 Consensus size: 63
97283 ATTTTGACCC
97293 TAATTATAAACTTTAGTTCATGGGCCTACACTTTACTTTTCACACGACAATTTATAATTAGGG
1 TAATTATAAACTTTAGTTCATGGGCCTACACTTTACTTTTCACACGACAATTTATAATTAGGG
*
97356 TAATTATAAACTTTAGTTCATGGGCCTACACTTTACTTTTCACATGACAATTTATAATTAG
1 TAATTATAAACTTTAGTTCATGGGCCTACACTTTACTTTTCACACGACAATTTATAATTAG
97417 TGTAGTTGGT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.32, C:0.17, G:0.11, T:0.40
Consensus pattern (63 bp):
TAATTATAAACTTTAGTTCATGGGCCTACACTTTACTTTTCACACGACAATTTATAATTAGGG
Found at i:106448 original size:22 final size:23
Alignment explanation
Indices: 106423--106478 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
106413 GGAAAAATCT
* *
106423 AAATTTGATAAGGA-CGTTATCA
1 AAATTTCATAAGCATCGTTATCA
* *
106445 AAATTTTAT-ACCATCGTTATCA
1 AAATTTCATAAGCATCGTTATCA
106467 AAATTTCATAAG
1 AAATTTCATAAG
106479 TAATCAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
21 2 0.07
22 24 0.89
23 1 0.04
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (23 bp):
AAATTTCATAAGCATCGTTATCA
Found at i:106554 original size:22 final size:21
Alignment explanation
Indices: 106502--106559 Score: 75
Period size: 20 Copynumber: 2.8 Consensus size: 21
106492 ATAAAGTAGT
106502 ATGATTATCAAAA-TTTATCA
1 ATGATTATCAAAATTTTATCA
106522 ATGATTATCAAAATTTTAT-A
1 ATGATTATCAAAATTTTATCA
*
106542 TTGTAGTTATCAAAATTT
1 ATG-A-TTATCAAAATTT
106560 CCCAGTTTGG
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
20 16 0.47
21 6 0.18
22 12 0.35
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.45
Consensus pattern (21 bp):
ATGATTATCAAAATTTTATCA
Found at i:110485 original size:992 final size:971
Alignment explanation
Indices: 108236--111374 Score: 3183
Period size: 992 Copynumber: 3.2 Consensus size: 971
108226 CCATGATGGT
** * * *
108236 AAAAATGACCCTAAAGATTTTTCCTCATTTTTTTGGC-AAAACTACTCAT-AAATATATATAATT
1 AAAAATGACCAGAAAAATTATTCCTCA-ATTTTTGGCTAAAA-TACTCATAAAATATATATAATT
* ** * * *
108299 CAACGCCAAAAGGATTGTAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTT-TGAATT
64 CAACACCAAAAAAATTGGAGGGCTTTTCACGC-TTTAATATTGTTTTTCATATTTTTTCTGAATT
* * * *** * *
108363 AATTTCTAATTAAATCGAAAAAAGATTCAGATGCACATAAAAACAAATCCTTAACTCCAATGTGC
128 AATTTCTAATTAAATCGAAACATGATTCAGATACTTGTAAAAACAAA---TT-A-GCC-A--T-A
* * * * **
108428 CTGAGATTTGATTAGATTAATAAATATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACA
184 CT-AGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCAAAAAATCATGCAAAATT
** * * * * *
108493 GAGTTGTTGTCCTGGAACGCGTTTTTAGCTAAAACCCGTGAT-AGTTACTACACGATTTCGGATA
248 GAGCCG-GGTCCTGGAACGCGTTTTTAGCCAAAAACCGTGATGA-TTATTACACGATTTCGGCT-
* *
108557 AAATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTGGCTAAAATACTCATAAAAAAT
310 AAATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTAGCCAAAATACTCATAAAAAAT
* *** * * *
108622 ATATAATTCGACATTAAAAAGATTGAAGGGCTTTTAACGCTTCTAATATTGTTTTTCCAATTTTT
375 ATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTT
* *
108687 TCCGAATTAATTTCTAATTAAATCAAAACAAGATTCAGATGCTCGTAAAAATAAATCCTTAAATC
440 TCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATC
* * * * * *
108752 TAATGTGTCTGAGAGTTGCTTAGATGAATATAGATATTTCAAGGA-TT--GCACCATAAATCATG
505 CAATGTGTCTGAAATTTGATTAGATGAATATAGATATTTCAAGGAGTTCGGC-GCAAAAATCATG
* * * *
108814 CAAAACTGAGCCGGGCCCCA-GAACGCATTTTTAGCCGAAAACCGTGAAGATTAGTACACGATTT
569 CAAAATTGAGCCGGG-CCCATGAACGCGTTTTTAGCCAAAAACCGTGATGATTAGTACACGATTT
* * * * * * * *
108878 CGGCTAAAATTTTGTAAAAATTGATCCGAAAGA-ATTTTCCTC-GATTTCTAACGAAAATACTCA
633 CGGCTAAAATTTTGCAAAAATTGAACCGAAATATTTTTTTCTCAAATTT-T-GCTAAAATACTCA
* * * *
108941 TAAAAAACATATAATTCAATGTCAAAAA-ATTGAAAGCCTTTTTCACGCTTTTAATATCGTTTTT
696 T-AAAAATATATAATTCAA-CTCAAAAAGATTG-AGGACTTTTT-ACGCTTTTAATATCGTTTTT
* * * * * *
109005 CATATTGTTGTGAATTAATTTTTAATTAAATCAAAACAAGATTTAGATGCTTGTAAAAACAAATC
757 CATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAAAAAATC
* * * * * * * *
109070 ATTAAATCCAACGTGCCTAAGATTTTATTAGATGAATAAATATATTTCAAGGAGTCTCGGCACCA
822 CTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCA
* * * **
109135 AAAATGATGCAAAACTAAGCTGGGGCCCCGAAACACGTTTTTAGCTGAAAACC--G-TG-AT---
887 AAAATCATGCAAAACTGAGC-CGGGCCCCGAAACACGTTTTTAGCAAAAAACCGTGATGTATACA
*
109193 ---TTTCGGCTAACATTTTGC
951 CGATTTCGGCTAAAATTTTGC
*
109211 AAAAATGACCAGAAAAATTATTCTGTCAATTTTTGGCTAAAATACTCATAAAATATATATAATTC
1 AAAAATGACCAGAAAAATTATTC-CTCAATTTTTGGCTAAAATACTCATAAAATATATATAATTC
109276 AACACCAAAAAAATTGGAGGGCTTTTCACGCATTTAAT-TTCGTTTTTCATATTTTTT-TGAATT
65 AACACCAAAAAAATTGGAGGGCTTTTCACGC-TTTAATATT-GTTTTTCATATTTTTTCTGAATT
* *
109339 AATTTCTAATTAAATCGAAACAAT-ATTCAGATGCTTGTAAAAACAAATTTTTAAATCCAATTTA
128 AATTTCTAATTAAATCGAAAC-ATGATTCAGATACTTGTAAAAACAAA---TT--AGCC-A--T-
* * * * * *
109403 ACTAAGATTTGATTAAACGAATATGGATATCTCAAAGAGTCTTGGCGCAAAAAATCATGCAAAAC
183 ACT-AGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCAAAAAATCATGCAAAA-
* *
109468 TT-AGCCGGGGCTCTGGAATGCGTTTTTAGCCAAAAACCGTGATGATTATTACACGATTTCGATC
246 TTGAGCCGGGTC-CTGGAACGCGTTTTTAGCCAAAAACCGTGATGATTATTACACGA-TT---TC
* * * *
109532 GGCTAGAATTTTGCAAAAATCGACTCGAAAGTTATTTCCTCAATTTTTAGCCACAATACTCATAA
306 GGCTA-AATTTTGCAAAAATTGACCCGAAAGATATTTCCTCAATTTTTAGCCAAAATACTCATAA
* * * * * *
109597 AAATTGTATAATCCAACGCCAAAAATATTGAAGGGCTTTCCATGCTTCTAATATCGTTTTTCCTA
370 AAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTA
* * ***
109662 TTATTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCAGATGCTTGT-TTTACAAATCCT
435 TT-TTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCT
* * *
109726 TAAATCCAATTTGTCTGAAATTTGGTTAGATGAATGTAGATATTTCAAGGAGTCTCGGCGCAAAA
499 TAAATCCAATGTGTCTGAAATTTGATTAGATGAATATAGATATTTCAAGGAGT-TCGGCGC-AAA
* * *
109791 AATCATGCAACATTGAAACCTGGGCCCATGAACGCGTTTTTAGCCAAAAACCGTGATTTCGACTA
562 AATCATGCAAAATTG-AGCC-GGGCCCATGAACGCGTTTTTAGCCAAAAACCGTGA--T-GA-TT
* * **
109856 ACGTACACGGTTTCGGCTAATATTTTGCAAAAATTGAACAAAAATATTTTTTTCTCAAATTTTGT
621 A-GTACACGATTTCGGCTAAAATTTTGCAAAAATTGAACCGAAATATTTTTTTCTCAAATTTTG-
* *
109921 CTAAAATACTTATAAAATATATATAATTCAACTCAAAAAAGATCTGAGGACTTTTTACGCATTTA
684 CTAAAATACTCATAAAA-ATATATAATTCAACTC-AAAAAGAT-TGAGGACTTTTTACGCTTTTA
*
109986 ATATCGTTTTTCGTATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGT
746 ATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGT
* * *
110051 AAAAAAAAATCCTTAAATGCAATATGGCTGAGACTTGATTAGATGAATATAGATATTTCAAGGAG
811 AAAAAAAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAG
* * *
110116 TCTCGACGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGAAACGCGTTTTTAGCAAAAAAAAA
876 TCTCGGCGCCAAAAATCATGCAAAACTGAGCCGGG-CCCCGAAACACGTTTTTAGC----AAAAA
*
110181 ACCGTGATGTAACGTACACGATTTCAGCTAAAATTTTGC
936 ACCGTGATGT-A--TACACGATTTCGGCTAAAATTTTGC
* ** * * *
110220 AAAAATGACCAAAAAAATTATTCCTCAATTTTTAACCACAATACTCATAAAATATATTTAATTCA
1 AAAAATGACCAGAAAAATTATTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATTCA
* * ** * *
110285 ACACTAAAAAGATTTAAGGGCTTTTCACGCTTCTAATATTGTTTTTCCTATTTTTTCCGAATTAA
66 ACACCAAAAAAATTGGAGGGCTTTTCACGCTT-TAATATTGTTTTTCATATTTTTTCTGAATTAA
* * * * * *
110350 TTTCTAATTAAAACGAAACATGATTAAGATATTTGTAAAAAC-AA-T-GGC-T-GT-GATTTGGT
130 TTTCTAATTAAATCGAAACATGATTCAGATACTTGTAAAAACAAATTAGCCATACTAGATTTGAT
* * * *
110409 TAGATGAATATAGATATTTCAAGGAGTCTCGGCGCAAAAAATCATTCAAAGTTGAACCGGGTCCC
195 TAGATGAATATAGATATTTCAAGGAGTCTCGGCGCAAAAAATCATGCAAAATTGAGCCGGGTCCT
* *** *
110474 GGGACGCGTTTTTAGCCAAAAACCCCAATGATTATTACACGATTTCGGCTTAAATTTTGAAAAAA
260 GGAACGCGTTTTTAGCCAAAAACCGTGATGATTATTACACGATTTCGGC-TAAATTTTGCAAAAA
* * *
110539 TTGACCCGAAAGATATTTCCTCAATTTTTAGCCATAATACTCATAAAAAATATATAATTAAATGC
324 TTGACCCGAAAGATATTTCCTCAATTTTTAGCCAAAATACTCATAAAAAATATATAATTCAACGC
* ** * * * **
110604 CAAGAAGATTGAAGTACTTTTCACACTTTTAATATCGTTTTTCATATTTTTTTTCTAAATTAATT
389 CAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTA--TTTTTTCCGAATTAATT
* * * *
110669 TCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACATATCCTTAAATGCAATGTGGCT-A
452 TCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGTCTGA
* *
110733 AGATTTTATTAGATGAATATAGATATTTCAAGGAGTGTCGGCGCAAAAACCATGCAAAACTT-AG
517 A-ATTTGATTAGATGAATATAGATATTTCAAGGAGT-TCGGCGCAAAAATCATGCAAAA-TTGAG
* ** * * *
110797 CCGGGGCC-TCGAAACATGTTTTTAGCCAAAAAAACCATGATGGGTTAGTACACGATTTTGGCTA
579 CCGGGCCCAT-G-AACGCGTTTTTAGCC--AAAAACCGTGAT-GATTAGTACACGATTTCGGCTA
* * * *
110861 AAATTTTGCAACAAA-T-AACCCGAAAT-TTTTTTTCCCAATTTTTGATAAAACACTCAT-AAAA
639 AAATTTTGCAA-AAATTGAA-CCGAAATATTTTTTTCTCAAATTTTGCTAAAATACTCATAAAAA
* * * *
110922 TATATAATTTAACACCAAAAAGATTGGAGGACTTTTCACGCTTTTAATATCATTTTTCATATTTT
702 TATATAATTCAAC-TCAAAAAGATT-GAGGACTTTTTACGCTTTTAATATCGTTTTTCATATTTT
* * * *
110987 TCTGAATTAATTTCTAATTAAATCGAAAAAAGATTCAGATGCTTGTGAAAATAAATTCTTAAATC
765 TCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAAAAAATCCTTAAATC
* * * *
111052 CAATGTGGCTGAGATTTGATTAGATGAATATGGATATCTCAAGGAGTCTTGGCGTCAAAAATCAT
830 CAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAATCAT
* * * * *
111117 GCAAAACTGAGCCGGGACCCTAGAACACTTTTTTAGCCAAAAACTGTGATGGTTATTACACGATT
895 GCAAAACTGAGCCGGGCCCCGA-AACACGTTTTTAGCAAAAAACCGTGAT-G-TA-TACACGATT
*
111182 TCGGCTAAAATTTTGT
956 TCGGCTAAAATTTTGC
* * * *
111198 AAAAATTAACCCGAAAGA-TATTTCTTCAATTTTTGGCTAAAATACTCATAAAA-ATATATAATT
1 AAAAA-TGACCAGAAAAATTA-TTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATT
* * * * * ** * *
111261 CAACGCCAAAAATATTGGAGGGCTTTTTACTCTTTTAATATCGCATTTCTTATTTTTTCTAAATT
64 CAACACCAAAAAAATTGGAGGGCTTTTCACGC-TTTAATATTGTTTTTCATATTTTTTCTGAATT
* * * * *
111326 AATTTTTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAGCAAATT
128 AATTTCTAATTAAATCGAAACATGATTCAGATACTTGTAAAAACAAATT
111375 CTTAAATCCA
Statistics
Matches: 1801, Mismatches: 283, Indels: 155
0.80 0.13 0.07
Matches are distributed among these distances:
975 37 0.02
976 219 0.12
977 6 0.00
978 135 0.07
979 42 0.02
980 167 0.09
981 52 0.03
982 202 0.11
983 5 0.00
984 27 0.01
985 25 0.01
986 60 0.03
987 11 0.01
988 128 0.07
989 63 0.03
990 75 0.04
991 48 0.03
992 242 0.13
993 71 0.04
994 2 0.00
995 1 0.00
996 6 0.00
997 1 0.00
998 1 0.00
999 2 0.00
1001 2 0.00
1003 1 0.00
1004 1 0.00
1007 2 0.00
1008 85 0.05
1009 82 0.05
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (971 bp):
AAAAATGACCAGAAAAATTATTCCTCAATTTTTGGCTAAAATACTCATAAAATATATATAATTCA
ACACCAAAAAAATTGGAGGGCTTTTCACGCTTTAATATTGTTTTTCATATTTTTTCTGAATTAAT
TTCTAATTAAATCGAAACATGATTCAGATACTTGTAAAAACAAATTAGCCATACTAGATTTGATT
AGATGAATATAGATATTTCAAGGAGTCTCGGCGCAAAAAATCATGCAAAATTGAGCCGGGTCCTG
GAACGCGTTTTTAGCCAAAAACCGTGATGATTATTACACGATTTCGGCTAAATTTTGCAAAAATT
GACCCGAAAGATATTTCCTCAATTTTTAGCCAAAATACTCATAAAAAATATATAATTCAACGCCA
AAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTCCGAATTAATTTCTA
ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGTCTGAAATT
TGATTAGATGAATATAGATATTTCAAGGAGTTCGGCGCAAAAATCATGCAAAATTGAGCCGGGCC
CATGAACGCGTTTTTAGCCAAAAACCGTGATGATTAGTACACGATTTCGGCTAAAATTTTGCAAA
AATTGAACCGAAATATTTTTTTCTCAAATTTTGCTAAAATACTCATAAAAATATATAATTCAACT
CAAAAAGATTGAGGACTTTTTACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTA
ATTAAATCGAAACAAGATTCAGATGCTTGTAAAAAAAAATCCTTAAATCCAATGTGGCTGAGATT
TGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACTGAGCCGGG
CCCCGAAACACGTTTTTAGCAAAAAACCGTGATGTATACACGATTTCGGCTAAAATTTTGC
Found at i:111254 original size:330 final size:327
Alignment explanation
Indices: 108236--111409 Score: 3001
Period size: 318 Copynumber: 9.6 Consensus size: 327
108226 CCATGATGGT
* * * *
108236 AAAAA-TGACCCTAAAGATTTTTCCTCATTTTTTTGGC-AAAACTACTCATAAATATATATAATT
1 AAAAATTGACCCGAAAGATATTTCCTCA-ATTTTTGGCTAAAA-TACTCATAAAAATATATAATT
* * * *
108299 CAACGCCAAAAGGATTGTAGGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTTTGAATTA
64 CAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTA
* *** * *
108364 ATTTCTAATTAAATCGAAAAAAGATTCAGATGCACATAAAAACAAATCCTTAACTCCAATGTGCC
129 ATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAACAAATCCTTAAATCCAATGTGGC
* * * *
108429 TGAGATTTGATTAGATTAATAAATATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACAG
194 TGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCG-CAAAAATCATGCAAAACTG
** * ** * * * * *
108494 AGTTGTTGTCCTGGAACGCGTTTTTAGCTAAAACCCGTGATAGTTACTACACGATTTCGGATAAA
258 AGCCG--GGCCCAGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAA
108559 ATTTTGC
321 ATTTTGC
108566 AAAAATTGACCCGAAAGATATTTCCTCAATTTTTGGCTAAAATACTCATAAAAAATATATAATTC
1 AAAAATTGACCCGAAAGATATTTCCTCAATTTTTGGCTAAAATACTCAT-AAAAATATATAATTC
* *** * * * *
108631 GACATTAAAAAGATTGAAGGGCTTTTAACGCTTCTAATATTGTTTTTCCA-ATTTTTTCCGAATT
65 AACGCCAAAAAGATTGAAGGGCTTTTCACGCTTTTAATATCGTTTTT-CATA-TTTTTCTGAATT
* * * * *
108695 AATTTCTAATTAAATCAAAACAAGATTCAGATGCTCGTAAAAATAAATCCTTAAATCTAATGTGT
128 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAACAAATCCTTAAATCCAATGTGG
* * * *
108760 CTGAGAGTTGCTTAGATGAATATAGATATTTCAAGGA-T-T--GCACCATAAATCATGCAAAACT
193 CTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGC-GCAAAAATCATGCAAAACT
* * * *
108821 GAGCCGGGCCCCAGAACGCATTTTTAGCCGAAAACCGTGAAGATTAGTACACGATTTCGGCTAAA
257 GAGCCGGG-CCCAGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAA
*
108886 ATTTTGT
321 ATTTTGC
* * * ** * *
108893 AAAAATTGATCCGAAAGA-ATTTTCCTCGATTTCTAACGAAAATACTCATAAAAAACATATAATT
1 AAAAATTGACCCGAAAGATA-TTTCCTCAATTTTTGGCTAAAATACTCAT-AAAAATATATAATT
* * * * * *
108957 CAATGTCAAAAA-ATTGAAAGCCTTTTTCACGCTTTTAATATCGTTTTTCATATTGTTGTGAATT
64 CAACGCCAAAAAGATTGAAGGGC-TTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATT
* * * * * *
109021 AATTTTTAATTAAATCAAAACAAGATTTAGATGCTTGTAAAAACAAATCATTAAATCCAACGTGC
128 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAACAAATCCTTAAATCCAATGTGG
* * * * * *
109086 CTAAGATTTTATTAGATGAATAAATATATTTCAAGGAGTCTCGGCACCAAAAATGATGCAAAACT
193 CTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGC-GCAAAAATCATGCAAAACT
* * * * **
109151 AAGCTGGGGCCCCGAAACACGTTTTTAGCTGAAAACC--G-T-G--A-T------TTTCGGCTAA
257 GAGC-CGGGCCCAG-AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAA
*
109203 CATTTTGC
320 AATTTTGC
* * *
109211 AAAAA-TGACCAGAAAAAT-TATTCTGTCAATTTTTGGCTAAAATACTCATAAAATATATATAAT
1 AAAAATTGACCCGAAAGATAT-TTC-CTCAATTTTTGGCTAAAATACTCATAAAA-ATATATAAT
* * * * * *
109274 TCAACACCAAAAAAATTGGAGGGCTTTTCACGCATTTAATTTCGTTTTTCATATTTTTTTGAATT
63 TCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATT
* ** * **
109339 AATTTCTAATTAAATCGAAACAATATTCAGATGCTTGTAAAAACAAATTTTTAAATCCAATTTAA
128 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAACAAATCCTTAAATCCAATGTGG
* * * * * * *
109404 CTAAGATTTGATTAAACGAATATGGATATCTCAAAGAGTCTTGGCGCAAAAAATCATGCAAAACT
193 CTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGC-AAAAATCATGCAAAACT
* ** * * *
109469 TAGCCGGGGCTCTGGAATGCGTTTTTAGCCAAAAACCGTGATGATTATTACACGATTTCGATCGG
257 GAGCC-GGGC-CCAGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGA-TT---TCGG
*
109534 CTAGAATTTTGC
316 CTAAAATTTTGC
* * * * * * * *
109546 AAAAATCGACTCGAAAGTTATTTCCTCAATTTTTAGCCACAATACTCATAAAAATTGTATAATCC
1 AAAAATTGACCCGAAAGATATTTCCTCAATTTTTGGCTAAAATACTCATAAAAA-TATATAATTC
* * * * * *
109611 AACGCCAAAAATATTGAAGGGCTTTCCATGCTTCTAATATCGTTTTTCCTATTATTTTCCGAATT
65 AACGCCAAAAAGATTGAAGGGCTTTTCACGCTTTTAATATCGTTTTTCATA-T-TTTTCTGAATT
* *** * *
109676 AATTTCTAATTAAATCGAAACATGATTCAGATGCTTGT-TTTACAAATCCTTAAATCCAATTTGT
128 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAACAAATCCTTAAATCCAATGTGG
* * * * *
109740 CTGAAATTTGGTTAGATGAATGTAGATATTTCAAGGAGTCTCGGCGCAAAAAATCATGCAACATT
193 CTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGC-AAAAATCATGCAAAACT
* * * *
109805 GAAACCTGGGCCCATGAACGCGTTTTTAGCCAAAAACCGTGATTTCGACTAACGTACACGGTTTC
257 G-AGCC-GGGCCCA-GAACGCGTTTTTAGCCAAAAACCGTGA--T-G-GTTA-GTACACGATTTC
*
109870 GGCTAATATTTTGC
314 GGCTAAAATTTTGC
* ** * * * * * *
109884 AAAAATTGAACAAAAATATTTTTTTCTCAAATTTTGTCTAAAATACTTATAAAATATATATAATT
1 AAAAATTGACCCGAAAGA-TATTTCCTCAATTTTTGGCTAAAATACTCATAAAA-ATATATAATT
* * * * * *
109949 CAACTCAAAAAAGATCTG-AGGACTTTTTACGCATTTAATATCGTTTTTCGTATTTTTCTGAATT
64 CAACGCCAAAAAGAT-TGAAGGGCTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATT
* * *
110013 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAAAAAATCCTTAAATGCAATATGG
128 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAACAAATCCTTAAATCCAATGTGG
* * *
110078 CTGAGACTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAATT
193 CTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCG-CAAAAATCATGCAAAACT
* * * *
110143 GAGCCGGGTCCCCGAAACGCGTTTTTAGCAAAAAAAAAACCGTGAT-GTAACGTACACGATTTCA
257 GAGCCGGG-CCCAG-AACGCGTTTTTAGC----CAAAAACCGTGATGGTTA-GTACACGATTTCG
110207 GCTAAAATTTTGC
315 GCTAAAATTTTGC
** * ** * * *
110220 AAAAA-TGACCAAAAAAAT-TATTCCTCAATTTTTAACCACAATACTCATAAAATATATTTAATT
1 AAAAATTGACCCGAAAGATAT-TTCCTCAATTTTTGGCTAAAATACTCATAAAA-ATATATAATT
* * * * * * *
110283 CAACACTAAAAAGATTTAAGGGCTTTTCACGCTTCTAATATTGTTTTTCCTATTTTTTCCGAATT
64 CAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTTTAATATCGTTTTTCATA-TTTTTCTGAATT
* * * **
110348 AATTTCTAATTAAAACGAAACATGATTAAGATATTTGT-------AA-----AAA--CAA--TGG
128 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAACAAATCCTTAAATCCAATGTGG
* * * **
110397 CTGTGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCAAAAAATCATTCAAAGTT
193 CTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGC-AAAAATCATGCAAAACT
* * * *** * * *
110462 GAACCGGGTCCCGGGACGCGTTTTTAGCCAAAAACCCCAATGATTATTACACGATTTCGGCTTAA
257 GAGCCGGG-CCCAGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAA
*
110527 ATTTTGA
321 ATTTTGC
* * * *
110534 AAAAATTGACCCGAAAGATATTTCCTCAATTTTTAGCCATAATACTCATAAAAAATATATAATTA
1 AAAAATTGACCCGAAAGATATTTCCTCAATTTTTGGCTAAAATACTCAT-AAAAATATATAATTC
* * ** * *
110599 AATGCCAAGAAGATTGAAGTACTTTTCACACTTTTAATATCGTTTTTCATATTTTTTTTCTAAAT
65 AACGCCAAAAAGATTGAAGGGCTTTTCACGCTTTTAATATCGTTTTTCATA---TTTTTCTGAAT
* * * *
110664 TAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACATATCCTTAAATGCAATGTG
127 TAATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAACAAATCCTTAAATCCAATGTG
* * * *
110729 GCTAAGATTTTATTAGATGAATATAGATATTTCAAGGAGTGTCGGCGCAAAAACCATGCAAAACT
192 GCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCAAAAATCATGCAAAACT
* ** * *
110794 TAGCCGGGGCCTC-GAAACATGTTTTTAGCCAAAAAAACCATGATGGGTTAGTACACGATTTTGG
257 GAGCC-GGGCC-CAG-AACGCGTTTTTAGCC--AAAAACCGTGAT-GGTTAGTACACGATTTCGG
110858 CTAAAATTTTGC
316 CTAAAATTTTGC
* ** * * *
110870 AACAAA-TAACCCGAAATTTTTTTTCC-CAATTTTT-GATAAAACACTCAT-AAAATATATAATT
1 AA-AAATTGACCCGAAA-GATATTTCCTCAATTTTTGGCTAAAATACTCATAAAAATATATAATT
* * * * *
110931 TAACACCAAAAAGATTGGAGGACTTTTCACGCTTTTAATATCATTTTTCATATTTTTCTGAATTA
64 CAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTA
* * * *
110996 ATTTCTAATTAAATCGAAAAAAGATTCAGATGCTTGTGAAAATAAATTCTTAAATCCAATGTGGC
129 ATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAACAAATCCTTAAATCCAATGTGGC
* * *
111061 TGAGATTTGATTAGATGAATATGGATATCTCAAGGAGTCTTGGCGTCAAAAATCATGCAAAACTG
194 TGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCG-CAAAAATCATGCAAAACTG
* * * *
111126 AGCCGGGACCCTAGAACACTTTTTTAGCCAAAAACTGTGATGGTTATTACACGATTTCGGCTAAA
258 AGCCGGG-CCC-AGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAA
*
111191 ATTTTGT
321 ATTTTGC
* *
111198 AAAAATTAACCCGAAAGATATTTCTTCAATTTTTGGCTAAAATACTCATAAAAATATATAATTCA
1 AAAAATTGACCCGAAAGATATTTCCTCAATTTTTGGCTAAAATACTCATAAAAATATATAATTCA
* * * * ** * *
111263 ACGCCAAAAATATTGGAGGGCTTTTTACTCTTTTAATATCGCATTTCTTATTTTTTCTAAATTAA
66 ACGCCAAAAAGATTGAAGGGCTTTTCACGCTTTTAATATCGTTTTTCATA-TTTTTCTGAATTAA
* * * * *
111328 TTTTTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAGCAAATTCTTAAATCCAATGTTGCT
130 TTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAACAAATCCTTAAATCCAATGTGGCT
*
111393 GAGATTTGGTTAGATGA
195 GAGATTTGATTAGATGA
111410 TGTAAAGTAT
Statistics
Matches: 2331, Mismatches: 406, Indels: 213
0.79 0.14 0.07
Matches are distributed among these distances:
314 36 0.02
315 87 0.04
316 6 0.00
317 60 0.03
318 241 0.10
319 81 0.03
320 1 0.00
321 4 0.00
323 3 0.00
324 3 0.00
325 2 0.00
326 109 0.05
327 146 0.06
328 73 0.03
329 26 0.01
330 215 0.09
331 225 0.10
332 123 0.05
333 120 0.05
334 78 0.03
335 167 0.07
336 166 0.07
337 155 0.07
338 103 0.04
339 76 0.03
340 4 0.00
341 15 0.01
342 6 0.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (327 bp):
AAAAATTGACCCGAAAGATATTTCCTCAATTTTTGGCTAAAATACTCATAAAAATATATAATTCA
ACGCCAAAAAGATTGAAGGGCTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAAT
TTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAACAAATCCTTAAATCCAATGTGGCTG
AGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCAAAAATCATGCAAAACTGAGC
CGGGCCCAGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTT
GC
Found at i:111745 original size:15 final size:16
Alignment explanation
Indices: 111727--111756 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
111717 ATAAATAATA
111727 ATATTATAAT-TAAAT
1 ATATTATAATCTAAAT
111742 ATATTATAATCTAAA
1 ATATTATAATCTAAA
111757 AATAATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATTATAATCTAAAT
Found at i:112441 original size:22 final size:21
Alignment explanation
Indices: 112395--112477 Score: 69
Period size: 22 Copynumber: 3.8 Consensus size: 21
112385 ATAAGGAGGT
*
112395 TTATTAAAATTTCT-TAGTAAGA
1 TTATCAAAATTT-TATAGTAA-A
112417 TTATCAAAATTTTATAAGTAAA
1 TTATCAAAATTTTAT-AGTAAA
* * * *
112439 TTATGACAATTTTATAGTGTAT
1 TTATCAAAATTTTATAGT-AAA
*
112461 TTATCAAAATTTCATAG
1 TTATCAAAATTTTATAG
112478 CATGATTACC
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
21 4 0.08
22 41 0.82
23 5 0.10
ACGTcount: A:0.41, C:0.06, G:0.08, T:0.45
Consensus pattern (21 bp):
TTATCAAAATTTTATAGTAAA
Found at i:113564 original size:3 final size:3
Alignment explanation
Indices: 113550--113581 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
113540 TCCTTGGATG
*
113550 AGA AGC AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
113582 GTACCGACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.62, C:0.03, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:115623 original size:2 final size:2
Alignment explanation
Indices: 115616--115640 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
115606 GCCAGAAGCG
115616 CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT C
115641 AATTCATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:121138 original size:34 final size:34
Alignment explanation
Indices: 121100--121165 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
121090 AGCACCACTG
121100 TGTCTTCTCGTGTACCTTCGTGTCTGTCTTCCTC
1 TGTCTTCTCGTGTACCTTCGTGTCTGTCTTCCTC
121134 TGTCTTCTCGTGTACCTTCGTGTCTGTCTTCC
1 TGTCTTCTCGTGTACCTTCGTGTCTGTCTTCC
121166 GAGGCCTCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.03, C:0.32, G:0.18, T:0.47
Consensus pattern (34 bp):
TGTCTTCTCGTGTACCTTCGTGTCTGTCTTCCTC
Found at i:121340 original size:125 final size:124
Alignment explanation
Indices: 121166--121397 Score: 403
Period size: 125 Copynumber: 1.9 Consensus size: 124
121156 TCTGTCTTCC
121166 GAGGCCTCTCTCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCAGAG
1 GAGGCCTCTCTCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCAGAG
121231 GCCTCTCCCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCG
66 GCCTCTCCCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCG
* *
121290 GAGGCCTCT-TCCTTCCTCTTGTCTTCTCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCGG
1 GAGGCCTCTCT-CTTCCTC-TGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCAG
* *
121354 AGGCCTCTTCCTTCCTCTGTCTTCTCGTGTACCTTCGTGTCTGT
64 AGGCCTCTCCCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGT
121398 CGTGTCTTCA
Statistics
Matches: 102, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
123 1 0.01
124 16 0.16
125 85 0.83
ACGTcount: A:0.04, C:0.38, G:0.22, T:0.36
Consensus pattern (124 bp):
GAGGCCTCTCTCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCAGAG
GCCTCTCCCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCG
Found at i:121342 original size:63 final size:62
Alignment explanation
Indices: 121166--121397 Score: 403
Period size: 62 Copynumber: 3.7 Consensus size: 62
121156 TCTGTCTTCC
* *
121166 GAGGCCTC-TCTCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGCTGGCCTCGCCTCCTGCA
1 GAGGCCTCTTC-CTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCG
*
121228 GAGGCCTCTCCCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCG
1 GAGGCCTCTTCCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCG
121290 GAGGCCTCTTCCTTCCTCTTGTCTTCTCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCG
1 GAGGCCTCTTCCTTCCTC-TGTCTTCTCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCG
*
121353 GAGGCCTCTTCCTTCCTCTGTCTTCTCGTGTACCTTCGTGTCTGT
1 GAGGCCTCTTCCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGT
121398 CGTGTCTTCA
Statistics
Matches: 163, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
62 100 0.61
63 63 0.39
ACGTcount: A:0.04, C:0.38, G:0.22, T:0.36
Consensus pattern (62 bp):
GAGGCCTCTTCCTTCCTCTGTCTTCTCGTGTACCTTCGTGCCTGTTGGCCTCGCCTCCTGCG
Found at i:131396 original size:27 final size:27
Alignment explanation
Indices: 131358--131410 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
131348 AAACAATCCA
*
131358 TTGGATGAAAATTACATTTTTGTTTTT
1 TTGGATGAAAATTACATTTTCGTTTTT
131385 TTGGATGAAAATTACATTTTCGTTTT
1 TTGGATGAAAATTACATTTTCGTTTT
131411 AGAGTATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.06, G:0.15, T:0.53
Consensus pattern (27 bp):
TTGGATGAAAATTACATTTTCGTTTTT
Found at i:132911 original size:168 final size:168
Alignment explanation
Indices: 132633--132979 Score: 640
Period size: 168 Copynumber: 2.1 Consensus size: 168
132623 AAGTTCTAGT
* *
132633 TTGAAATTTAAATAATCGGTCGAGATAATATTCATACATTCATATTTAAATATTATTAATTATTA
1 TTGAAATTTGAATAATCGATCGAGATAATATTCATACATTCATATTTAAATATTATTAATTATTA
132698 TTCTGATCATATGTGTGTATACTCATAAACTTCCTCGTTATGGATTATCATTAGATGAAGAATTT
66 TTCTGATCATATGTGTGTATACTCATAAACTTCCTCGTTATGGATTATCATTAGATGAAGAATTT
132763 GTATAGATGGAAGACATGCCTTCTTGACTACATGAGCC
131 GTATAGATGGAAGACATGCCTTCTTGACTACATGAGCC
*
132801 TTGAAATTTGAATAATCGATCGAGATAATATTCATACATTCATATTTAAATATTATTAATTATTG
1 TTGAAATTTGAATAATCGATCGAGATAATATTCATACATTCATATTTAAATATTATTAATTATTA
* *
132866 TTCTGATCATATGTGTTTATACTCATAAACTTGCTCGTTATGGATTATCATTAGATGAAGAATTT
66 TTCTGATCATATGTGTGTATACTCATAAACTTCCTCGTTATGGATTATCATTAGATGAAGAATTT
*
132931 GTATAGATGGAAGATATGCCTTCTTGACTACATGAGCC
131 GTATAGATGGAAGACATGCCTTCTTGACTACATGAGCC
132969 TTGAAATTTGA
1 TTGAAATTTGA
132980 TTGTACTTCT
Statistics
Matches: 173, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
168 173 1.00
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (168 bp):
TTGAAATTTGAATAATCGATCGAGATAATATTCATACATTCATATTTAAATATTATTAATTATTA
TTCTGATCATATGTGTGTATACTCATAAACTTCCTCGTTATGGATTATCATTAGATGAAGAATTT
GTATAGATGGAAGACATGCCTTCTTGACTACATGAGCC
Found at i:136693 original size:4 final size:4
Alignment explanation
Indices: 136684--136709 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
136674 GATTGTCCCT
136684 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
136710 GCCAAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:138471 original size:47 final size:45
Alignment explanation
Indices: 138419--138508 Score: 153
Period size: 47 Copynumber: 2.0 Consensus size: 45
138409 TAATTAAATT
*
138419 TAATATCTTTATAACTATTTTATTTTTACCATTTTACTAATTTTATC
1 TAATATCTCTATAACTATTTTATTTTT--CATTTTACTAATTTTATC
138466 TAATATCTCTATAACTATTTTATTTTTCATTTTACTAATTTTA
1 TAATATCTCTATAACTATTTTATTTTTCATTTTACTAATTTTA
138509 ATTAAGTTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
45 16 0.38
47 26 0.62
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.58
Consensus pattern (45 bp):
TAATATCTCTATAACTATTTTATTTTTCATTTTACTAATTTTATC
Found at i:138999 original size:91 final size:91
Alignment explanation
Indices: 138844--139208 Score: 703
Period size: 91 Copynumber: 4.0 Consensus size: 91
138834 ACTCTTATTG
138844 TTAATGTTGGACTAGTGTATAAGACTAGTTAATTTGGTGTTAGCCTTGCAGTAGACTGTAGTGTT
1 TTAATGTTGGACTAGTGTATAAGACTAGTTAATTTGGTGTTAGCCTTGCAGTAGACTGTAGTGTT
138909 AAGACTCTTTCCTCCACTTTTCATTT
66 AAGACTCTTTCCTCCACTTTTCATTT
*
138935 TTAATGTTGGACTAGTGTATAAGGCTAGTTAATTTGGTGTTAGCCTTGCAGTAGACTGTAGTGTT
1 TTAATGTTGGACTAGTGTATAAGACTAGTTAATTTGGTGTTAGCCTTGCAGTAGACTGTAGTGTT
139000 AAGACTCTTTCCTCCACTTTTCATTT
66 AAGACTCTTTCCTCCACTTTTCATTT
*
139026 TTAATGTTGGACTAGTGTATAAGGCTAGTTAATTTGGTGTTAGCCTTGCAGTAGACTGTAGTGTT
1 TTAATGTTGGACTAGTGTATAAGACTAGTTAATTTGGTGTTAGCCTTGCAGTAGACTGTAGTGTT
139091 AAGACTCTTTCCTCCACTTTTCATTT
66 AAGACTCTTTCCTCCACTTTTCATTT
139117 TTAATGTTGGACTAGTGTATAAGACTAGTTAATTTGGTGTTAGCCTTGCAGTAGACTGTAGTGTT
1 TTAATGTTGGACTAGTGTATAAGACTAGTTAATTTGGTGTTAGCCTTGCAGTAGACTGTAGTGTT
*
139182 AAGACTCTTTCCTCCGCTTTTCATTT
66 AAGACTCTTTCCTCCACTTTTCATTT
139208 T
1 T
139209 CATTTAGAGG
Statistics
Matches: 271, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 271 1.00
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (91 bp):
TTAATGTTGGACTAGTGTATAAGACTAGTTAATTTGGTGTTAGCCTTGCAGTAGACTGTAGTGTT
AAGACTCTTTCCTCCACTTTTCATTT
Found at i:156485 original size:62 final size:62
Alignment explanation
Indices: 156409--156526 Score: 164
Period size: 62 Copynumber: 1.9 Consensus size: 62
156399 CTTTCGGTAT
* * *
156409 TTGTTTGTCATTCACAAAATTCAAATTCAATACTTTGCTTAAACGATACTTAACTCGCGCAC
1 TTGTTTATCATTCACAAAATTCAAATTCAAGACCTTGCTTAAACGATACTTAACTCGCGCAC
** ** *
156471 TTGTTTATCATTCACAAAATTTGAATTTGAGACCTTGCTTAAACGTTACTTAACTC
1 TTGTTTATCATTCACAAAATTCAAATTCAAGACCTTGCTTAAACGATACTTAACTC
156527 CTTCCGCTCA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 48 1.00
ACGTcount: A:0.31, C:0.20, G:0.10, T:0.38
Consensus pattern (62 bp):
TTGTTTATCATTCACAAAATTCAAATTCAAGACCTTGCTTAAACGATACTTAACTCGCGCAC
Found at i:156728 original size:188 final size:188
Alignment explanation
Indices: 156391--156742 Score: 476
Period size: 188 Copynumber: 1.9 Consensus size: 188
156381 ATTTTATAAG
* * * * *
156391 AGGAAGCTCTTTCGGTATTTGTTTGTCATTCACAAAATTCAAATTCAATACTTTGCTTAAACGAT
1 AGGAAACTCTTCCGGCATTTGTTTGTCATTCACAAAATTCAAATTCAAGACTTTGCTTAAACAAT
* * * * * *
156456 ACTTAACTCGCGCACTTGTTTATCATTCACAAAATTTGAATTTGAGACCTTGCTTAAACGTTACT
66 ACTTAACTCGCGCACTTGTTTATAATTCACAAAATTCGAATTCGAAACCTTACTTAAACGTCACT
156521 TAACTCCTTCCGCTCAATAAAATAGCATCCGTCAGTGATATGTATTGATTATAATATA
131 TAACTCCTTCCGCTCAATAAAATAGCATCCGTCAGTGATATGTATTGATTATAATATA
* * *
156579 AGGAAACTCTTCCGGCATTTGTTTTTCATTCATAAAATTCAAATTTAAGA-TCTTGCTTAAACAA
1 AGGAAACTCTTCCGGCATTTGTTTGTCATTCACAAAATTCAAATTCAAGACT-TTGCTTAAACAA
* * *
156643 TACTTAACTTG-GACACTTGTTTGTAATTCACAAGATTCGAATTCGAAACCTTACTTTAAACG-C
65 TACTTAACTCGCG-CACTTGTTTATAATTCACAAAATTCGAATTCGAAACCTTAC-TTAAACGTC
* * *
156706 ACTTATCTCCTTCCGGTCAATAAAATAGCATGCGTCA
128 ACTTAACTCCTTCCGCTCAATAAAATAGCATCCGTCA
156743 TTAGTGTTTT
Statistics
Matches: 141, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
187 2 0.01
188 132 0.94
189 7 0.05
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (188 bp):
AGGAAACTCTTCCGGCATTTGTTTGTCATTCACAAAATTCAAATTCAAGACTTTGCTTAAACAAT
ACTTAACTCGCGCACTTGTTTATAATTCACAAAATTCGAATTCGAAACCTTACTTAAACGTCACT
TAACTCCTTCCGCTCAATAAAATAGCATCCGTCAGTGATATGTATTGATTATAATATA
Found at i:159363 original size:23 final size:23
Alignment explanation
Indices: 159337--159383 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
159327 CTGAAATTGA
159337 ATTACTTTTTTCTTGTTCACCAT
1 ATTACTTTTTTCTTGTTCACCAT
159360 ATTACTTTTTTCTTGTTCACCAT
1 ATTACTTTTTTCTTGTTCACCAT
159383 A
1 A
159384 CTCAAATCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.19, C:0.21, G:0.04, T:0.55
Consensus pattern (23 bp):
ATTACTTTTTTCTTGTTCACCAT
Found at i:172898 original size:30 final size:28
Alignment explanation
Indices: 172821--172898 Score: 102
Period size: 29 Copynumber: 2.6 Consensus size: 28
172811 ACTTGTAGCC
172821 TTTGGACGTTTTGCCCCATGAACTTCAAT
1 TTTGGACGTTTTGCCCC-TGAACTTCAAT
* *
172850 TTTGAACATTTTGCCCCCTGAACTTCAAT
1 TTTGGACGTTTTG-CCCCTGAACTTCAAT
172879 TTTGGGACGTTTTGTCCCCT
1 TTT-GGACGTTTTG-CCCCT
172899 CAGGCTAACA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
29 25 0.60
30 17 0.40
ACGTcount: A:0.18, C:0.26, G:0.17, T:0.40
Consensus pattern (28 bp):
TTTGGACGTTTTGCCCCTGAACTTCAAT
Found at i:178684 original size:19 final size:20
Alignment explanation
Indices: 178654--178719 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 20
178644 TTGACACTGT
178654 TTAGCAACTGTACAAATGAGA
1 TTAGC-ACTGTACAAATGAGA
*
178675 TTA-CACTGTACATATATTAGA
1 TTAGCACTGTACA-A-ATGAGA
* *
178696 TTAGGTACTGTATAAATGAGA
1 TTA-GCACTGTACAAATGAGA
178717 TTA
1 TTA
178720 TTAGAACAGC
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 8 0.22
20 2 0.05
21 19 0.51
22 1 0.03
23 7 0.19
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (20 bp):
TTAGCACTGTACAAATGAGA
Found at i:183043 original size:17 final size:17
Alignment explanation
Indices: 183023--183057 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
183013 TTTGTTTAGA
183023 CTTTGATTTTTCATTAC
1 CTTTGATTTTTCATTAC
*
183040 CTTTGATTTTTTATTAC
1 CTTTGATTTTTCATTAC
183057 C
1 C
183058 GAATTCTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.17, G:0.06, T:0.60
Consensus pattern (17 bp):
CTTTGATTTTTCATTAC
Found at i:189817 original size:68 final size:68
Alignment explanation
Indices: 189691--189817 Score: 150
Period size: 68 Copynumber: 1.9 Consensus size: 68
189681 AAGTATAAAT
* * * * * *
189691 AGTTGAGTCATTTCCCTAGTCTTGTCTAGAAGTCATAATTAATGCTAGAATTTTATGTAAATACA
1 AGTTGAGTCATTTCCCTAGTCTTGTCCAGAAGTAACAATTAATGCTACAATATAATGTAAATACA
189756 CAC
66 CAC
* *
189759 AGTTGAGTCATTT-CCTGAGTCTTGTCCA-AAGTAACAATTAGTGGTACAATAATAATGTA
1 AGTTGAGTCATTTCCCT-AGTCTTGTCCAGAAGTAACAATTAATGCTACAAT-ATAATGTA
189818 TGTATAGCAA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
67 20 0.41
68 29 0.59
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (68 bp):
AGTTGAGTCATTTCCCTAGTCTTGTCCAGAAGTAACAATTAATGCTACAATATAATGTAAATACA
CAC
Found at i:197503 original size:48 final size:48
Alignment explanation
Indices: 197426--197517 Score: 148
Period size: 48 Copynumber: 1.9 Consensus size: 48
197416 GAATGGTCGA
*
197426 TAAGTTCAACTGGAACGGCTCTGGCGGTGGCGTTACCATGGCGGTTGG
1 TAAGGTCAACTGGAACGGCTCTGGCGGTGGCGTTACCATGGCGGTTGG
* * *
197474 TAAGGTCAACTGGAACGGCTGTGGTGGTGGCGTTGCCATGGCGG
1 TAAGGTCAACTGGAACGGCTCTGGCGGTGGCGTTACCATGGCGG
197518 AAGAGGGAGG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.16, C:0.20, G:0.40, T:0.24
Consensus pattern (48 bp):
TAAGGTCAACTGGAACGGCTCTGGCGGTGGCGTTACCATGGCGGTTGG
Found at i:198668 original size:122 final size:121
Alignment explanation
Indices: 198414--198668 Score: 264
Period size: 122 Copynumber: 2.1 Consensus size: 121
198404 TTGATCACCT
* * * * *
198414 ATGGTGATCTTGGCAGGTGATCTCAGATCATCCTGTTTGGTTATACTTTTTGGTTTGGTGTGGTA
1 ATGGTAATCTTGGCAGGTGATCTCAGATCACCCCGCTTGGTTACACTTTTTGGTTTGGTGTGGTA
* * **** ** *
198479 ATCCGGATCACCCCTGATCAACCTCTAAGGGGGCGTTTGGTTGGAGGTGATCCACCT
66 ATCCGGATCACCCCTGATCAACCTCTAAGGGGGCATCTGGTT-GACACCATAAACCC
* * *
198536 GTGGTGATCTTGGCAGGTGATCTCAGATCACCCCGCTTGGTTACATTTTTTGGTTTGGTGTGGTA
1 ATGGTAATCTTGGCAGGTGATCTCAGATCACCCCGCTTGGTTACACTTTTTGGTTTGGTGTGGTA
* * *
198601 ATCCGGATTACCCCATGATCACCCCTCTAAGGGTG-ATCTGGATT-ACCACCATAAACCC
66 ATCCGGATCACCCC-TGATCA-ACCTCTAAGGGGGCATCTGG-TTGA-CACCATAAACCC
198659 AT-GTAATCTT
1 ATGGTAATCTT
198669 TGATCACCAG
Statistics
Matches: 109, Mismatches: 20, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
122 80 0.73
123 16 0.15
124 13 0.12
ACGTcount: A:0.19, C:0.22, G:0.25, T:0.33
Consensus pattern (121 bp):
ATGGTAATCTTGGCAGGTGATCTCAGATCACCCCGCTTGGTTACACTTTTTGGTTTGGTGTGGTA
ATCCGGATCACCCCTGATCAACCTCTAAGGGGGCATCTGGTTGACACCATAAACCC
Found at i:198708 original size:17 final size:16
Alignment explanation
Indices: 198668--198714 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
198658 CATGTAATCT
*
198668 TTGATCACCAGTGATC
1 TTGATCACTAGTGATC
*
198684 TTGCATCACTGGTGATC
1 TTG-ATCACTAGTGATC
198701 TTAGATCACTAGTG
1 TT-GATCACTAGTG
198715 GTGATCCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 3 0.12
17 22 0.85
18 1 0.04
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.34
Consensus pattern (16 bp):
TTGATCACTAGTGATC
Found at i:198757 original size:109 final size:110
Alignment explanation
Indices: 198622--198823 Score: 361
Period size: 109 Copynumber: 1.8 Consensus size: 110
198612 CCCATGATCA
* *
198622 CCCCTCTAAGGGTGATCTGGATTACCACCATAAACCCATGTAATCTTTGATCACCAGTGATCTTG
1 CCCCTCTAAGGGTGATCTAGATTACCACCATAAACACATGTAATCTTTGATCACCAGTGATCTTG
*
198687 CATCACTGGTGATCTTAGATCACTAGTGGTGATCCTAACCAAACG
66 CATCACTGGTGATCTTAAATCACTAGTGGTGATCCTAACCAAACG
*
198732 CCCC-CTAAGGGTGATCTAGATTACCACCATAAACACATGTAATCTTTGATCACCGGTGATCTTG
1 CCCCTCTAAGGGTGATCTAGATTACCACCATAAACACATGTAATCTTTGATCACCAGTGATCTTG
198796 CATCACTGGTGATCTTAAATCACTAGTG
66 CATCACTGGTGATCTTAAATCACTAGTG
198824 ATTAATTTGT
Statistics
Matches: 88, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
109 84 0.95
110 4 0.05
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.29
Consensus pattern (110 bp):
CCCCTCTAAGGGTGATCTAGATTACCACCATAAACACATGTAATCTTTGATCACCAGTGATCTTG
CATCACTGGTGATCTTAAATCACTAGTGGTGATCCTAACCAAACG
Found at i:198817 original size:17 final size:17
Alignment explanation
Indices: 198780--198825 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
198770 GTAATCTTTG
* **
198780 ATCACCGGTGATCTTGC
1 ATCACTGGTGATCTTAA
198797 ATCACTGGTGATCTTAA
1 ATCACTGGTGATCTTAA
*
198814 ATCACTAGTGAT
1 ATCACTGGTGAT
198826 TAATTTGTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.33
Consensus pattern (17 bp):
ATCACTGGTGATCTTAA
Found at i:199778 original size:31 final size:31
Alignment explanation
Indices: 199731--199896 Score: 152
Period size: 31 Copynumber: 5.4 Consensus size: 31
199721 TTTGTCCACG
** * **
199731 TGGCATGCCATGTGTCAGTTTTTGAAACACA
1 TGGCATGCCACATGTCACTTTTTGGTACACA
*
199762 TGGCATGCCACATGTCACTTTTGGGTACACA
1 TGGCATGCCACATGTCACTTTTTGGTACACA
* ** *
199793 TGGCGTGATACATGTCACTTTTTGGTACACG
1 TGGCATGCCACATGTCACTTTTTGGTACACA
* * * *
199824 TGGCGTGCCTCATGTCGCTTTTTGGTACACG
1 TGGCATGCCACATGTCACTTTTTGGTACACA
* * ** **
199855 TGGCGTGCTACATGTTGCTTTTTGGTACATG
1 TGGCATGCCACATGTCACTTTTTGGTACACA
199886 TGGCATGCCAC
1 TGGCATGCCAC
199897 GTCGAACACC
Statistics
Matches: 114, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 114 1.00
ACGTcount: A:0.18, C:0.22, G:0.26, T:0.34
Consensus pattern (31 bp):
TGGCATGCCACATGTCACTTTTTGGTACACA
Found at i:199815 original size:62 final size:62
Alignment explanation
Indices: 199743--199896 Score: 191
Period size: 62 Copynumber: 2.5 Consensus size: 62
199733 GCATGCCATG
* ** *
199743 TGTCAGTTTTTGAAACACATGGCATGCCACATGTCACTTTTGGGTACACATGGCGTGATACA
1 TGTCACTTTTTGGTACACGTGGCATGCCACATGTCACTTTTGGGTACACATGGCGTGATACA
* * * * * *
199805 TGTCACTTTTTGGTACACGTGGCGTGCCTCATGTCGCTTTTTGGTACACGTGGCGTGCTACA
1 TGTCACTTTTTGGTACACGTGGCATGCCACATGTCACTTTTGGGTACACATGGCGTGATACA
** *
199867 TGTTGCTTTTTGGTACATGTGGCATGCCAC
1 TGTCACTTTTTGGTACACGTGGCATGCCAC
199897 GTCGAACACC
Statistics
Matches: 77, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 77 1.00
ACGTcount: A:0.18, C:0.22, G:0.25, T:0.34
Consensus pattern (62 bp):
TGTCACTTTTTGGTACACGTGGCATGCCACATGTCACTTTTGGGTACACATGGCGTGATACA
Found at i:204762 original size:332 final size:330
Alignment explanation
Indices: 203529--205878 Score: 2348
Period size: 332 Copynumber: 7.0 Consensus size: 330
203519 AAAATCGAAC
* ** * *
203529 ACTAACTATCACGGGTTTTGGATAAAAATTCGTTATAGGGATCCGATTCAATTTTGCATGATTTT
1 ACTAAC-ATCACGGTTTTTGGATAAAAACGCGTTATAGGGACCCGACTCAATTTTGCATGATTTT
* * * * * ** *
203594 TGGCGCCATGACTCCTTGAAATATCTATTTTCATGTAACCAAATCTCAGTCACGTTGAATTTAAG
65 TGGCGCCAAGACTCCTTGAAATATCTAATTTCATCTATCCAAATCTCAGCCATATTGGATTTAAG
**
203659 GA-TT-TTTTTACGAGCATCAGAATCGAGTTTCGATTTAATTAGAAATTAATCAAAAAAAAAACG
130 GATTTGTTTTTACGAGCATCAGAATCGAGTTTCGATTTAATTAGAAATTAAT-TTAAAAAAAA-G
* *
203722 GAAAAAACAATATTAGAAACGTAAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTT
193 G-AAAAACAATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTT
* * * *
203787 ATGATTATTGCGGCTAAAAATTGAGGAAAAATCTTTCAGGTCAATTTTTGCAAATTTTTTTGCCG
257 ATGAGTATTGCGGCTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTTAGCCG
203852 AAATCGTGT
322 AAATCGTGT
* * * * * * * * * **
203861 ACTTACCATCACGATTTTTTTTTGGCTAAAAAGGCATT-TCGAGACCCGTCTCAAATTTGCATCT
1 AC-TAACATCACG----GTTTTTGGATAAAAACGCGTTATAGGGACCCGACTCAATTTTGCATGA
* * * * * * *
203925 TTTTTGGCCCCCAAAACTCCTTGAAGTATCT-A-TACAAATCT-TAGCAAATCTCATCCAAATTG
61 TTTTTGG-CGCCAAGACTCCTTGAAATATCTAATTTC--ATCTAT-CCAAATCTCAGCCATATTG
*
203987 GATTTAAGGGTTTGTTTTTACGAGCATCAGAAT--ATGTTTCGATTTAATTAGAAATTAATTTGG
122 GATTTAAGGATTTGTTTTTACGAGCATCAGAATCGA-GTTTCGATTTAATTAGAAATTAATTT--
** * * *
204050 GATTAAAAAGGAAAAACAATACTAGAAGCGTGAAAAACCCTTCAACCTTTTTGGCATTGAATTAT
184 -AAAAAAAAGGAAAAACAATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTAT
* * * *
204115 ATATTCTTTATGAGTATTGTGGCCAAAAATTGAGG-AAAATTTTTCGGGTCAATTTTTGCAAAA-
248 ATATTTTTTATGAGTATTGCGGCTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAAT
*
204178 TTTTAGCCCAAATCGTGT
313 TTTTAGCCGAAATCGTGT
* * * * ** ** *
204196 ACTAACCATCACGTTTTTTTTTTCTTGCTATAAACGCAATCCAGGGCCCCGACTCAATTTTGCAT
1 ACTAA-CATCACG-----GTTTT-TGGATAAAAACGCGTTATAGGGACCCGACTCAATTTTGCAT
* * * *
204261 GCTTTTTTGCGCCAAGACTCCTTGAAATATATCAATATTAATCTATCCAAATCTCAGCC-TCATT
59 GATTTTTGGCGCCAAGACTCCTTGAAATATCT-AAT-TTCATCTATCCAAATCTCAGCCAT-ATT
* * ** ***
204325 GGATTAAAGGATTT-TTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGG
121 GGATTTAAGGATTTGTTTTTACGAGCATCAGAATCGAGTTTCGATTTAATTAGAAATTAATTTAA
* *
204389 AAAAAAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATA
186 AAAAAAGGAAAAACAATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATA
* * * * *
204454 TTTATTATGAGTATTGTGGCTAGAAATTGAGGAAAAATATTTCGGGTCAATTTTTTCAAAACTTT
251 TTTTTTATGAGTATTGCGGCTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAA-TTT
204519 TTAGCCGAAATCGTGT
315 TTAGCCGAAATCGTGT
* * * * *
204535 ATTAACATCACGGTTTTTGGATAAAATCGCGTTATGGGGAACCGGCTCAATTTTGCATGATTTTT
1 ACTAACATCACGGTTTTTGGATAAAAACGCGTTATAGGGACCCGACTCAATTTTGCATGATTTTT
* * *
204600 GGCGCCATGACTCCTTGAAATATCTAATTTCATGTATCCAAATCTCAGCCATGTTGGATTTAAGG
66 GGCGCCAAGACTCCTTGAAATATCTAATTTCATCTATCCAAATCTCAGCCATATTGGATTTAAGG
* * *
204665 ATTTGTTCTTACGAGCATCAAAATCGAGTTTCGATTTAATTAGAAATGAATTTAAAAAAATAGGA
131 ATTTGTTTTTACGAGCATCAGAATCGAGTTTCGATTTAATTAGAAATTAATTTAAAAAAA-AGGA
* *
204730 AAAACAATATTAGAAACGTCAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATG
195 AAAACAATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATG
* * * * *
204795 ATTATGGCGGCTAAAAATTGAGAAAAAAATCTTTCGGGTCAATTTTTGCAAATTTTTTTTGCCGA
260 AGTATTGCGGCTAAAAATTGAG-GAAAAATCTTTCGGGTCAATTTTTGCAAA-ATTTTTAGCCGA
204860 AATCGTGT
323 AATCGTGT
* * * ** *
204868 ACT-CCATCACGGTTTTTTGACTAAAAAGGCGTT-CCGAGACCTCGACTCAATTTTGCATGATTT
1 ACTAACATCACGGTTTTTGGA-TAAAAACGCGTTATAGGGACC-CGACTCAATTTTGCATGATTT
* * * * * *
204931 TTGGCCCCAAGACTCCTTAAAATATCT-A-TACAAATCT-TAGCAAATCTCAGCCAAATTAGATT
64 TTGGCGCCAAGACTCCTTGAAATATCTAATTTC--ATCTAT-CCAAATCTCAGCCATATTGGATT
* * * * *
204993 TCAGGATTTGTTTTTACGAGCATCTGAAT--ATGTTTCGATTTAATTAAAAATCAATTTGGGATA
126 TAAGGATTTGTTTTTACGAGCATCAGAATCGA-GTTTCGATTTAATTAGAAATTAATTT---AAA
* * *
205056 AAAAAGGAAAAACAATACTAGAAGCGTAAAAAGCCCTTCAACCTTTTTGGCATTG-A--AT-T-T
187 AAAAAGGAAAAACAATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATAT
* * *
205116 TCTTTATGAGTATTGTGGCTAAAAATTGAGGAAAAATTTTTCGGGTCAATTTTTGCAAAA-TTTT
252 TTTTTATGAGTATTGCGGCTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTT
* *
205180 AGCCCAAATCGTGC
317 AGCCGAAATCGTGT
** ** * ** * *
205194 ACTAACAATCACGTTTTTTGTTTTTTTGTTTTTTTTTTTCTATATACGTAATCCAGGG-CCTAGA
1 ACTAAC-ATCACG------G--TTTTTG--------GATAAAAACGCGTTAT--AGGGACC-CGA
* * * * *
205258 CTCAATTTTGCATGCTCTTTTTGCTCCAAGACTCCTTGAAATATATCAATATTAATCTATCCAAA
46 CTCAATTTTGCATGAT-TTTTGGCGCCAAGACTCCTTGAAATATCT-AAT-TTCATCTATCCAAA
* * * * * ***
205323 TCTCAGCCACATTTGGATTAAAAGATTTCTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATT
108 TCTCAGCCATA-TTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCGAGTTTCGATTTAATT
** *
205388 AGAAATTAATTCGGAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTG
172 AGAAATTAATT-TAAAAAAAAGGAAAAACAATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTG
* *
205453 GCATTGAATTATATATTTATTATGAGTATTGCGGCTAAGAATTGAGGAAAAATCTTTCGGGTCAA
236 GCATTGAATTATATATTTTTTATGAGTATTGCGGCTAAAAATTGAGGAAAAATCTTTCGGGTCAA
*
205518 TTTTTGCAAAA-GTTTAGCCGAAATCGTGT
301 TTTTTGCAAAATTTTTAGCCGAAATCGTGT
* * *
205547 ACTAACCCATAACGGTTTTTGGATAAAAACGCGTTATGGGGACCCGGCTCAA-TTTGCATGATTT
1 ACTAA--CATCACGGTTTTTGGATAAAAACGCGTTATAGGGACCCGACTCAATTTTGCATGATTT
* ** * * **
205611 TTGGCGCCATGACTCCTTGAAATATCTTTTTTCATGTATCCAAATCTTAGCCACGTTGGATTTAA
64 TTGGCGCCAAGACTCCTTGAAATATCTAATTTCATCTATCCAAATCTCAGCCATATTGGATTTAA
205676 GGATTTGTTTTTACGAGCATCAGAATCGAGTTTCGATTTAATTAGAAATTAA-TTAAAAAAATAG
129 GGATTTGTTTTTACGAGCATCAGAATCGAGTTTCGATTTAATTAGAAATTAATTTAAAAAAA-AG
* ** * * *
205740 GAAAAATAATATTAGAAATGTCAAAAACCCTTCAATCTTTTTGGCATTGAAATATATATTTTTTA
193 GAAAAACAATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTA
* * ** *
205805 TGATTATTGCGGCTAAAAATTGAGAAAAAATCTTTTTGGTCAATTTTTGC-AAATTATTTTGCCG
258 TGAGTATTGCGGCTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATT-TTTAGCCG
205869 AAATCGTGT
322 AAATCGTGT
205878 A
1 A
205879 ACGCGTTTTT
Statistics
Matches: 1662, Mismatches: 270, Indels: 173
0.79 0.13 0.08
Matches are distributed among these distances:
326 18 0.01
327 1 0.00
328 33 0.02
329 36 0.02
330 141 0.08
331 127 0.08
332 213 0.13
333 156 0.09
334 77 0.05
335 65 0.04
336 194 0.12
337 165 0.10
338 78 0.05
339 83 0.05
340 1 0.00
341 1 0.00
343 6 0.00
345 20 0.01
346 33 0.02
348 72 0.04
349 33 0.02
350 24 0.01
351 2 0.00
352 1 0.00
353 76 0.05
354 5 0.00
355 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (330 bp):
ACTAACATCACGGTTTTTGGATAAAAACGCGTTATAGGGACCCGACTCAATTTTGCATGATTTTT
GGCGCCAAGACTCCTTGAAATATCTAATTTCATCTATCCAAATCTCAGCCATATTGGATTTAAGG
ATTTGTTTTTACGAGCATCAGAATCGAGTTTCGATTTAATTAGAAATTAATTTAAAAAAAAGGAA
AAACAATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGA
GTATTGCGGCTAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTTAGCCGAAAT
CGTGT
Found at i:205424 original size:682 final size:675
Alignment explanation
Indices: 204580--205876 Score: 1659
Period size: 682 Copynumber: 1.9 Consensus size: 675
204570 GGGGAACCGG
* * * *
204580 CTCAATTTTGCATGATTTTTGGCGCCATGACTCCTTGAAATATCTAATTTCATGTATCCAAATCT
1 CTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATATAATTTAATCTATCCAAATCT
* * *
204645 CAGCCATGTTGGATTTAAGGATTTGTTCTTACGAGCATCAAAATCGAGTTTCGATTTAATTAGAA
66 CAGCCATGTTGGATTAAAAGATTTCTTCTTACGAGCATCAAAATCGAGTTTCGATTTAATTAGAA
*
204710 ATGAATTTAAAAAAATAGGAAAAACAATATTAGAAACGTCAAAAGCCCTTCAATCTTTTTGGCAT
131 ATGAATTGAAAAAAATAGGAAAAACAATATTAGAAACGTCAAAAGCCCTTCAATCTTTTTGGCAT
* *
204775 TGAATTATATATTTTTTATGATTATGGCGGCTAAAAATTGAGAAAAAAATCTTTCGGGTCAATTT
196 TGAATTATATATTTATTATGAGTATGGCGGCTAAAAATTGAG-AAAAAATCTTTCGGGTCAATTT
** * * * *
204840 TTGCAAATTTTTTTTGCCGAAATCGTGTACT-CCATCACGGTTTTTTGACTAAAAAGGCGTT-CC
260 TTGCAAA--AGTTTAGCCGAAATCGTGTACTACCATAACGGTTTTTGGA-TAAAAACGCGTTACC
*
204903 GAGACCTCGACTCAATTTTGCATGATTTTTGGCCCCAAGACTCCTTAAAATATCTATACAAATCT
322 GAGACC-CGACTCAA-TTTGCATGATTTTTGGCCCCAAGACTCCTTAAAATATCTATACAAATGT
* * *
204968 -TAGCAAATCTCAGCCAAATTAGATTTCAGGATTTGTTTTTACGAGCATCTGAAT-ATGTTTCGA
385 AT-CCAAATCTCAGCCAAATTAGATTTAAGGATTTGTTTTTACGAGCATCAGAATCA-GTTTCGA
* *
205031 TTTAATTAAAAATCAATTTGGGATAAAAA-AGGAAAAACAATACTAGAAGCGT-AAAAAGCCCTT
448 TTTAATTAAAAATCAA-TT---AAAAAAATAGGAAAAACAATACTAGAAACGTCAAAAA-CCCTT
* *
205094 CAACCTTTTTGGCATTG-A-AT-T-TTCTTTATGAGTATTGTGGCTAAAAATTGAGGAAAAAT-T
508 CAACCTTTTTGGCATTGAATATATATTCTTTATGAGTATTGCGGCTAAAAATTGAGAAAAAATCT
205154 TTTCGGGTCAATTTTTGCAAA-ATTTTAGCCCAAATCGTGCACTAACAATCACGTTTTTTGTTTT
573 TTT-GGGTCAATTTTTGCAAATATTTT-GCCCAAATCGTGCACTAACAATCACGTTTTTTGTTTT
205218 TTTGTTTTTTTTTTTCTATATACGTAATCCAGGGCCTAGA
636 TTTGTTTTTTTTTTTCTATATACGTAATCCAGGGCCTAGA
* * *
205258 CTCAATTTTGCATGCTCTTTTTGCTCCAAGACTCCTTGAAATATATCAATATTAATCTATCCAAA
1 CTCAATTTTGCATGAT-TTTTGGCGCCAAGACTCCTTGAAATATAT-AAT-TTAATCTATCCAAA
* ** ***
205323 TCTCAGCCACAT-TTGGATTAAAAGATTTCTTTTTACGAGCATCTGAATTTTGTTTCGATTTAAT
63 TCTCAG-C-CATGTTGGATTAAAAGATTTCTTCTTACGAGCATCAAAATCGAGTTTCGATTTAAT
* * * * *
205387 TAGAAATTAATTCGGAAAAAA-AGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTT
126 TAGAAATGAATT-GAAAAAAATAGGAAAAACAATATTAGAAACGTCAAAAGCCCTTCAATCTTTT
* * *
205451 TGGCATTGAATTATATATTTATTATGAGTATTGCGGCTAAGAATTGAGGAAAAATCTTTCGGGTC
190 TGGCATTGAATTATATATTTATTATGAGTATGGCGGCTAAAAATTGAGAAAAAATCTTTCGGGTC
205516 AATTTTTGCAAAAGTTTAGCCGAAATCGTGTACTAACCCATAACGGTTTTTGGATAAAAACGCGT
255 AATTTTTGCAAAAGTTTAGCCGAAATCGTGTACT-A-CCATAACGGTTTTTGGATAAAAACGCGT
** * * * * * * ****
205581 TATGGGGACCCGGCTCAATTTGCATGATTTTTGGCGCCATGACTCCTTGAAATATCTTTTTTCAT
318 TACCGAGACCCGACTCAATTTGCATGATTTTTGGCCCCAAGACTCCTTAAAATATCTATACAAAT
* ** *
205646 GTATCCAAATCTTAGCCACGTTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCGAGTTTCG
383 GTATCCAAATCTCAGCCAAATTAGATTTAAGGATTTGTTTTTACGAGCATCAGAATC-AGTTTCG
* * * * * *
205711 ATTTAATTAGAAATTAATTAAAAAAATAGGAAAAATAATATTAGAAATGTCAAAAACCCTTCAAT
447 ATTTAATTAAAAATCAATTAAAAAAATAGGAAAAACAATACTAGAAACGTCAAAAACCCTTCAAC
* *
205776 CTTTTTGGCATTGAAATATATATTTTTTATGATTATTGCGGCTAAAAATTGAGAAAAAATCTTTT
512 CTTTTTGGCATTG-AATATATATTCTTTATGAGTATTGCGGCTAAAAATTGAGAAAAAATCTTTT
* *
205841 TGGTCAATTTTTGCAAATTATTTTGCCGAAATCGTG
576 GGGTCAATTTTTGCAAA-TATTTTGCCCAAATCGTG
205877 TAACGCGTTT
Statistics
Matches: 529, Mismatches: 67, Indels: 40
0.83 0.11 0.06
Matches are distributed among these distances:
677 6 0.01
678 55 0.10
679 49 0.09
680 91 0.17
681 88 0.17
682 161 0.30
683 59 0.11
684 15 0.03
685 5 0.01
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (675 bp):
CTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATATAATTTAATCTATCCAAATCT
CAGCCATGTTGGATTAAAAGATTTCTTCTTACGAGCATCAAAATCGAGTTTCGATTTAATTAGAA
ATGAATTGAAAAAAATAGGAAAAACAATATTAGAAACGTCAAAAGCCCTTCAATCTTTTTGGCAT
TGAATTATATATTTATTATGAGTATGGCGGCTAAAAATTGAGAAAAAATCTTTCGGGTCAATTTT
TGCAAAAGTTTAGCCGAAATCGTGTACTACCATAACGGTTTTTGGATAAAAACGCGTTACCGAGA
CCCGACTCAATTTGCATGATTTTTGGCCCCAAGACTCCTTAAAATATCTATACAAATGTATCCAA
ATCTCAGCCAAATTAGATTTAAGGATTTGTTTTTACGAGCATCAGAATCAGTTTCGATTTAATTA
AAAATCAATTAAAAAAATAGGAAAAACAATACTAGAAACGTCAAAAACCCTTCAACCTTTTTGGC
ATTGAATATATATTCTTTATGAGTATTGCGGCTAAAAATTGAGAAAAAATCTTTTGGGTCAATTT
TTGCAAATATTTTGCCCAAATCGTGCACTAACAATCACGTTTTTTGTTTTTTTGTTTTTTTTTTT
CTATATACGTAATCCAGGGCCTAGA
Found at i:206657 original size:331 final size:328
Alignment explanation
Indices: 205981--206759 Score: 822
Period size: 331 Copynumber: 2.4 Consensus size: 328
205971 TCTGAATCAT
* ** * * * *
205981 GTTTCTATTTAATTTA-AAATTAATTCAGGGAATAAATGAAAAATAATATCAGAAGCGTGAAAAA
1 GTTTCGATTTAA-TTAGAAATTAATTCAGAAAAAAAAGGAAAAACAATATCAGAAACGTG-AAAA
* * * * *
206045 CCCTTCAATCTTTTTGGCCTTGAATTATAAATTCTTTATGAGTATTGTGGCCAAAAATTGAGGAA
64 TCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAAGAA
* * * *
206110 AAATTTTTGGGTTAATTTTTGCAAATTATAGTAGAAATCCTGTACTAACAATCATGGTTTTTGGT
129 AAATTTTCGGGTAAATTTTTGCAAATTATAGCAGAAAT-CTGTACTAACAATCATGGTTTTTGGC
* * * * ** * *
206175 TAAAAACGTGTTTCGGGAACCCGGCTCAATTTTGTTTGATTTTGGGCGCCATGACTACTTGAAAT
193 TAAAAACGCGTTCCGAGAACCCAGCTCAATTTTGCATGATTTTGGGCCCCAAGACTACTTGAAAT
* * * * * * *
206240 AACTATTTTAATCTAACCAATTCTTAGCTACATTGGAATTACGGATTTGTTTTTACGAGCATTAG
258 AACTATTATAATCTAACAAATTCTAAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATTAC
206305 AATCGA
323 AATCGA
* *
206311 GTTTCGATTTAATTAGATATTAATT-AGAAAAAAATAGGAAAAA-AGATATTAGAAACGTGAAAA
1 GTTTCGATTTAATTAGAAATTAATTCAGAAAAAAA-AGGAAAAACA-ATATCAGAAACGTGAAAA
* * * * *
206374 TCCATTCAATATTTTTGGCGTTAAATTATATATTTTTTATGAGTATTGTGTCTAAAACTTGAAGA
64 TCC-TTCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAAGA
* * * * *
206439 AAAATCTTTCGGGTCAAATTTTT-CAAAATTTTAGCCGAAAT-TG-AGTATCTTATCATGGTTTT
128 AAAAT-TTTCGGGT-AAATTTTTGC-AAATTATAGCAGAAATCTGTACTAAC-AATCATGG-TTT
* * * * *
206501 TTGGCTAAAAAGGCGTTCCGAGACCCCAGCTCAATTTTGCATGTTTTTTGGCCCCAAGACTTCTT
188 TTGGCTAAAAACGCGTTCCGAGAACCCAGCTCAATTTTGCATGATTTTGGGCCCCAAGACTACTT
* * *
206566 GAAATATCTA-TATAGATCTTAGCAAATT-TAAGCCAAATTGGACTTAAGGATTTGTTTTTACGA
253 GAAATAACTATTATA-ATC-TAACAAATTCTAAGCCAAATTGGAATTAAGGATTTGTTTTTACGA
* *
206629 GCATTTCAA-CTA
316 GCATTACAATCGA
* * *
206641 TGTTTCGATTTAATTAGAAATTAATTCGGGATAAAAAAGGAAAAACAATACCAGAAGA-GTGAAA
1 -GTTTCGATTTAATTAGAAATTAATTC-AGAAAAAAAAGGAAAAACAATATCAGAA-ACGTGAAA
*
206705 AGTCCTTCAATCTTTTTGGCGTTGAATTATATATTTATTATGAGTATTGTGGCCA
63 A-TCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCCA
206760 TCACGGTTTT
Statistics
Matches: 370, Mismatches: 62, Indels: 32
0.80 0.13 0.07
Matches are distributed among these distances:
329 20 0.05
330 109 0.29
331 135 0.36
332 94 0.25
333 12 0.03
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.37
Consensus pattern (328 bp):
GTTTCGATTTAATTAGAAATTAATTCAGAAAAAAAAGGAAAAACAATATCAGAAACGTGAAAATC
CTTCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAAGAAAA
ATTTTCGGGTAAATTTTTGCAAATTATAGCAGAAATCTGTACTAACAATCATGGTTTTTGGCTAA
AAACGCGTTCCGAGAACCCAGCTCAATTTTGCATGATTTTGGGCCCCAAGACTACTTGAAATAAC
TATTATAATCTAACAAATTCTAAGCCAAATTGGAATTAAGGATTTGTTTTTACGAGCATTACAAT
CGA
Found at i:206847 original size:599 final size:593
Alignment explanation
Indices: 206160--207347 Score: 1450
Period size: 597 Copynumber: 2.0 Consensus size: 593
206150 TGTACTAACA
* * * **
206160 ATCATGGTTTTTGGTTAAAAACGTGTTTCGGGAACCCGGCTCAATTTTGTTTGATTTTGGGCGCC
1 ATCACGGTTTTTGGATAAAAACGTGTTTCGGGAACCCAGCTCAATTTTGCATGATTTTGGGCGCC
* * * * *
206225 ATGACTACTTGAAATAACTATTTTAATCTAACCAATTCTTAGCTACATTGGAATTACGGATTTGT
66 ATGACTACTTGAAATAACTATTTTAATCTAACCAAATCTCAGCCACATTAGAATTAAGGATTTGT
* *
206290 TTTTACGAGCATTAGAATCGAGTTTCGATTTAATTAGATATTAATTAGAAAAAAATAGGAAAAAA
131 TTTTACAAGCATCAGAATCGAGTTTCGATTTAATTAGATATTAATTAG-AAAAAATAGGAAAAAA
* *
206355 GATATTAGAAACGTGAAAATCCATTCAAT-ATTTTTGGCGTTAAATTATATATTTTTTATGAGTA
195 GATATTAGAAACATGAAAAGCCATTCAATCA-TTTTGGCGTTAAATTATATA-TTTTTATGAGTA
* * *
206419 TTGTGTCTAAA-ACTTGAAGAAA-AATCTTTCGGGTCAAATTTTT-CAAAATTTTAGCCGAAATT
258 TTG-GACTAAATA-TTGAAGAAATAATATTTCGGG-C-AATTTTTGCAAAATTTTAGCCGAAATC
* ** * * **
206481 GAGTATCT-TATCATGGTTTTTTGGCTAAAAAGGCGTTCCGAG-ACCCCAGCTCAATTTTGCATG
319 GAGTA-CTACATCACAG-TTTTTGCCTAAAAACGCACTCCG-GTACCCCAGCTCAATTTTGCATG
* * * * *
206544 TTTTTTGGCCCCAAGACTTCTTGAAATATCTA-TATAGAT-CTTAGC-AAATTTAAGCCAAATTG
381 ATTTTTGGCCCCAAGACTCCTTGAAATACCTATTATA-ATAC--AACTAAATCTAAGCCAAATTG
* *
206606 GACTTAAGGATTTGTTTTTACGAGCATTTCAA-CTATGTTTCGATTTAATTAGAAATTAATTCGG
443 GACTTAAGGATTTGTTTTTACGAGCATCTCAATC-ATGTTTCGATTTAATTAGAAATTAATTCAG
* *
206670 GATAAAAAAGGAAAAACAATACCAGAAGAGTGAAAAGTCCTTCAATCTTTTTGGCGTTGAATTAT
507 G--AAAAAAGGAAAAACAATACCAGAAGAGTAAAAAGCCCTTCAATCTTTTTGGCGTTGAATTAT
206735 ATATT-TATTATGAGTATTGTGGCC
570 ATATTCT-TTATGAGTATTGTGGCC
* *
206759 ATCACGGTTTTTGGATAAAAACGCT-TTAT-GGTG-ACCCAGCTTAATTTTGCATGATTTTTGGC
1 ATCACGGTTTTTGGATAAAAACG-TGTT-TCGG-GAACCCAGCTCAATTTTGCATGATTTTGGGC
* * * * * * * *
206821 GCCATGACTCCTTGAAATATCTATTTTCATGTATCCAAATCTCAGCCACGTTAGATTTAATGATT
63 GCCATGACTACTTGAAATAACTATTTTAATCTAACCAAATCTCAGCCACATTAGAATTAAGGATT
* *
206886 TGTTTTTACAAGCATCAGAATCGAGTTTTGATTTAATTAGATATTAATTCGAAAAAATAGGAAAA
128 TGTTTTTACAAGCATCAGAATCGAGTTTCGATTTAATTAGATATTAATTAGAAAAAATAGGAAAA
** * * * *
206951 ACTATATTAGAAACATGAAAGGCCCTTCAATCATTTTGGTGTTGAATTATATATTTTTATGAGTA
193 AAGATATTAGAAACATGAAAAGCCATTCAATCATTTTGGCGTTAAATTATATATTTTTATGAGTA
* * * *
207016 TTGGACTAAATATTGAGGAAATAATATTTTGGGCAATTTTTGTAAAATTTTAGCCGAAATCGTGT
258 TTGGACTAAATATTGAAGAAATAATATTTCGGGCAATTTTTGCAAAATTTTAGCCGAAATCGAGT
** *
207081 ACTAACCATCACAGTTTTTGCCTAAAAACGCACTCCGGTGTCCCGGCTCAATTTTGCATGATTTT
323 ACT-A-CATCACAGTTTTTGCCTAAAAACGCACTCCGGTACCCCAGCTCAATTTTGCATGATTTT
* * * ** * *
207146 TGGCGCCAAGACTCCTTGAAATACCTATTTTAATACAACTAAATCTCATTCATATTGGATTTAAG
386 TGGCCCCAAGACTCCTTGAAATACCTATTATAATACAACTAAATCTAAGCCAAATTGGACTTAAG
* *
207211 GATTTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAATTAGGAATTAATTCAGGAAAAAAGG
451 GATTTGTTTTTACGAGCATCTCAATCATGTTTCGATTTAATTAGAAATTAATTCAGGAAAAAAGG
* * *
207276 AAAAACAATATCAGAAGTGTAAAAAGCCCTTCATTCTTTTTGGCGTTGAATTATATATTCTTTAT
516 AAAAACAATACCAGAAGAGTAAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATTCTTTAT
207341 GAGTATT
581 GAGTATT
207348 TTAGAAAAAA
Statistics
Matches: 503, Mismatches: 70, Indels: 36
0.83 0.11 0.06
Matches are distributed among these distances:
595 82 0.16
596 40 0.08
597 162 0.32
598 67 0.13
599 149 0.30
600 3 0.01
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.37
Consensus pattern (593 bp):
ATCACGGTTTTTGGATAAAAACGTGTTTCGGGAACCCAGCTCAATTTTGCATGATTTTGGGCGCC
ATGACTACTTGAAATAACTATTTTAATCTAACCAAATCTCAGCCACATTAGAATTAAGGATTTGT
TTTTACAAGCATCAGAATCGAGTTTCGATTTAATTAGATATTAATTAGAAAAAATAGGAAAAAAG
ATATTAGAAACATGAAAAGCCATTCAATCATTTTGGCGTTAAATTATATATTTTTATGAGTATTG
GACTAAATATTGAAGAAATAATATTTCGGGCAATTTTTGCAAAATTTTAGCCGAAATCGAGTACT
ACATCACAGTTTTTGCCTAAAAACGCACTCCGGTACCCCAGCTCAATTTTGCATGATTTTTGGCC
CCAAGACTCCTTGAAATACCTATTATAATACAACTAAATCTAAGCCAAATTGGACTTAAGGATTT
GTTTTTACGAGCATCTCAATCATGTTTCGATTTAATTAGAAATTAATTCAGGAAAAAAGGAAAAA
CAATACCAGAAGAGTAAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATTCTTTATGAGTA
TTGTGGCC
Found at i:207830 original size:331 final size:330
Alignment explanation
Indices: 206757--208378 Score: 1956
Period size: 331 Copynumber: 4.9 Consensus size: 330
206747 AGTATTGTGG
* ** * ** *
206757 CCATCACGGTTTTTGGATAAAAACGCTTTATGGTGACCCAGCTTAATTTTGCATGATTTTTGGCG
1 CCATCACAGTTTTTGGCCAAAAACGCGTTCCGGTGACCCAGCTCAATTTTGCATGATTTTTGGCG
* * * * * ** * *
206822 CCATGACTCCTTGAAATATCTATTTTCATGTATCCAAATCTCAGCCACGTTAGATTTAATGATTT
66 CCAAGACTCCTTGAAATATCTATTTTAATCTAACCAAATCTCATCCATATTGGATTTAAGGATTT
* * *
206887 GTTTTTACAAGCATCAGAATCGAGTTTTGATTTAATTAGATATTAATTCGAAAAAATAGGAAAAA
131 GTTTTTACGAGCATCAGAATCGAGTTTCGATTTAATTAGAAATTAATTCGAAAAAATAGGAAAAA
* * * * *
206952 CTATATTAGAAACATGAAAGGCCCTTCAATCATTTTGGTGTTGAATTATATATTTTTATGAGTAT
196 CAATATTAGAAACGTGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTATGAGTAT
* * * *
207017 TGGACTAAATATTGAGGAAATAATA-TTTTGGGCAATTTTTGTAAAATTTTAGCCGAAATCGTGT
261 TGTACTAAAAATTGAGGAAATAATATTTTTGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGT
207081 ACTAA
326 ACTAA
** * *
207086 CCATCACAGTTTTT-GCCTAAAAACGCACTCCGGTGTCCCGGCTCAATTTTGCATGATTTTTGGC
1 CCATCACAGTTTTTGGCC-AAAAACGCGTTCCGGTGACCCAGCTCAATTTTGCATGATTTTTGGC
* * *
207150 GCCAAGACTCCTTGAAATACCTATTTTAATAC-AACTAAATCTCATTCATATTGGATTTAAGGAT
65 GCCAAGACTCCTTGAAATATCTATTTTAAT-CTAACCAAATCTCATCCATATTGGATTTAAGGAT
* * *
207214 TTGTTTTTACGAGCATCTGAATC-ATGTTTCGATTTAATTAGGAATTAATTCAGGAAAAA-AGGA
129 TTGTTTTTACGAGCATCAGAATCGA-GTTTCGATTTAATTAGAAATTAATTC-GAAAAAATAGGA
* ** * *
207277 AAAACAATATCAGAAGTGTAAAAAGCCCTTCATTCTTTTTGGCGTTGAATTATATATTCTTTATG
192 AAAACAATATTAGAAACGTGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATT-TTTATG
* ** * * *
207342 AGTATTTTAGAAAAAAAATCGAAGAAA-AAT-TTTTCGGGTCAATTTTTGCAAAACTTTT-GCCG
256 AGTATTGT--ACTAAAAATTGAGGAAATAATATTTT-TGGTCAATTTTTGCAAAA-TTTTAGCCG
*
207404 AAACCGTGTACTAA
317 AAATCGTGTACTAA
* * * * * * *
207418 CTATCACAGTTTTTGGCTAAAAACGCGTTCCGGGGATCAAACACAATTTTGCATGATTTTTGGCG
1 CCATCACAGTTTTTGGCCAAAAACGCGTTCCGGTGACCCAGCTCAATTTTGCATGATTTTTGGCG
* * *
207483 CCATA-ACTCCTTGAAATATCTATTTTAATCTAACTAAATCTAATCCATATTGGATTTAAAGATT
66 CCA-AGACTCCTTGAAATATCTATTTTAATCTAACCAAATCTCATCCATATTGGATTTAAGGATT
* * *
207547 TGTTTTTACGAGCATCAGAATCGAGTTTCAATTTGATTAGAAATTAATTCGAAAAAAATAGAAAA
130 TGTTTTTACGAGCATCAGAATCGAGTTTCGATTTAATTAGAAATTAATTCG-AAAAAATAGGAAA
* ** * *
207612 AACGATATTAGAAACGTGAAAAGCCCTTCAATCTTTTTAACGTTAAATTATATATTTTTATTAGT
194 AACAATATTAGAAACGTGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTATGAGT
*
207677 ATTGTACTAAAAATTGAGGAAATAGTATTTTTGGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
259 ATTGTACTAAAAATTGAGGAAATAATATTTTTGGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
*
207742 GTATTAA
324 GTACTAA
* *
207749 CCATCACTGTTTTTGGCCAAAAATGCGTTCCGGTGACCCAGCTCAATTTTGCATGATTTTTGGCG
1 CCATCACAGTTTTTGGCCAAAAACGCGTTCCGGTGACCCAGCTCAATTTTGCATGATTTTTGGCG
*
207814 TCAAGACTCCTTGAAATATCTATTTTAATCTAACCAAATCTCATCCATATTGGATTTAAGGATTT
66 CCAAGACTCCTTGAAATATCTATTTTAATCTAACCAAATCTCATCCATATTGGATTTAAGGATTT
* *
207879 GTTTTTACGAGCATCAGAATC-ATGTTTCGATTTAATTTGAAATTAATTCGGGATAAAA-AGGAA
131 GTTTTTACGAGCATCAGAATCGA-GTTTCGATTTAATTAGAAATTAATTC--GAAAAAATAGGAA
* ** * *
207942 AAACAATATCAGAAGTGTAAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTATTATGA
193 AAACAATATTAGAAACGTGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATTT-TTATGA
* * * * * *
208007 GTTTTGTGGCTAAGAAGTGAGGAAA-AATCTTTTGGGTCAATTTTTGCAAAATTTTAGCCGAAAT
257 GTATTGT-ACTAAAAATTGAGGAAATAATATTTTTGGTCAATTTTTGCAAAATTTTAGCCGAAAT
208071 CGTGTACTAA
321 CGTGTACTAA
* ** * ** *
208081 CCATCACGGTTTTTGGAAAAAAACACGTTATGG-GACCCGGCTCAATTTTGCATGATTTTTGGCG
1 CCATCACAGTTTTTGGCCAAAAACGCGTTCCGGTGACCCAGCTCAATTTTGCATGATTTTTGGCG
* * * * * * ** **
208145 CCATGACTCTTTGAAATATCTATTTTCATGTATCCAAATCTCAGCCACGTTAAATTTAAGGATTT
66 CCAAGACTCCTTGAAATATCTATTTTAATCTAACCAAATCTCATCCATATTGGATTTAAGGATTT
* * *
208210 GTTTTTACAAGCATCAGAATCGAGTTTCGATTTAATTAAAAATTAATTCGAAAAAATAGAAAAAA
131 GTTTTTACGAGCATCAGAATCGAGTTTCGATTTAATTAGAAATTAATTCGAAAAAATAGGAAAAA
* * *
208275 CGATACGTATTAGAAACGTGAAAAGCCCTTCGATCCTTTTGGCATTGAATTATATATTTTTATGA
196 C-A-A--TATTAGAAACGTGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTATGA
* * * *
208340 GTATTGGACTAAATATTCAGGAAATAATATTTTGGGTCA
257 GTATTGTACTAAAAATTGAGGAAATAATATTTTTGGTCA
208379 GACAGCAATT
Statistics
Matches: 1098, Mismatches: 163, Indels: 60
0.83 0.12 0.05
Matches are distributed among these distances:
328 2 0.00
329 205 0.19
330 45 0.04
331 384 0.35
332 317 0.29
333 99 0.09
334 46 0.04
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.36
Consensus pattern (330 bp):
CCATCACAGTTTTTGGCCAAAAACGCGTTCCGGTGACCCAGCTCAATTTTGCATGATTTTTGGCG
CCAAGACTCCTTGAAATATCTATTTTAATCTAACCAAATCTCATCCATATTGGATTTAAGGATTT
GTTTTTACGAGCATCAGAATCGAGTTTCGATTTAATTAGAAATTAATTCGAAAAAATAGGAAAAA
CAATATTAGAAACGTGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTATGAGTAT
TGTACTAAAAATTGAGGAAATAATATTTTTGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGT
ACTAA
Found at i:208034 original size:663 final size:661
Alignment explanation
Indices: 206801--208378 Score: 2299
Period size: 663 Copynumber: 2.4 Consensus size: 661
206791 GACCCAGCTT
206801 AATTTTGCATGATTTTTGGCGCCATGACTCCTTGAAATATCTATTTTCATGTATCCAAATCTCAG
1 AATTTTGCATGATTTTTGGCGCCATGACTCCTTGAAATATCTATTTTCATGTATCCAAATCTCAG
* * *
206866 CCACGTTAGATTTAATGATTTGTTTTTACAAGCATCAGAATCGAGTTTTGATTTAATTAGATATT
66 CCACGTTAGATTTAAAGATTTGTTTTTACAAGCATCAGAATCGAGTTTCGATTTAATTAGAAATT
* * * * *
206931 AATTCGAAAAAATAGGAAAAACTATATTAGAAACATGAAAGGCCCTTCAATCATTTTGGTGTTGA
131 AATTCGAAAAAATAGAAAAAACGATATTAGAAACGTGAAAAGCCCTTCAATCATTTTGGCGTTGA
* *
206996 ATTATATATTTTTATGAGTATTGGACTAAATATTGAGGAAATAATA-TTTTGGGCAATTTTTGTA
196 ATTATATATTTTTATGAGTATTGGACTAAATATTGAGGAAATAATATTTTTGGTCAATTTTTGCA
*
207060 AAATTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGCCTAAAAACGCACTCCGGTGTCCC
261 AAATTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGCCTAAAAACGCACTCCGGTGACCC
* *
207125 GGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATACCTATTTTAATACAACTAAAT
326 AGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATACCTATTTTAATACAACCAAAT
* *
207190 CTCATTCATATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAATTAG
391 CTCATCCATATTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCATGTTTCGATTTAATTAG
* *
207255 GAATTAATTCAGGAAAAAAGGAAAAACAATATCAGAAGTGTAAAAAGCCCTTCATTCTTTTTGGC
456 AAATTAATTCAGGAAAAAAGGAAAAACAATATCAGAAGTGTAAAAAGCCCTTCAATCTTTTTGGC
*
207320 GTTGAATTATATATTCTTTATGAGTATTTTAGAAAAAAAATCGAAGAAAAAT-TTTTCGGGTCAA
521 ATTGAATTATATATTCTTTATGAGTATTTTAGAAAAAAAATCGAAGAAAAATCTTTT-GGGTCAA
* ** *
207384 TTTTTGCAAAACTTTT-GCCGAAACCGTGTACTAACTATCACAGTTTTTGGCTAAAAACGCGTTC
585 TTTTTGCAAAA-TTTTAGCCGAAACCGTGTACTAACCATCACAGTTTTTGGAAAAAAACACGTT-
* *
207448 CGGGGATCAAACAC
648 AGGGGACCAAACAC
* * * * * * *
207462 AATTTTGCATGATTTTTGGCGCCATAACTCCTTGAAATATCTATTTTAATCTAACTAAATCTAAT
1 AATTTTGCATGATTTTTGGCGCCATGACTCCTTGAAATATCTATTTTCATGTATCCAAATCTCAG
** * * * *
207527 CCATATTGGATTTAAAGATTTGTTTTTACGAGCATCAGAATCGAGTTTCAATTTGATTAGAAATT
66 CCACGTTAGATTTAAAGATTTGTTTTTACAAGCATCAGAATCGAGTTTCGATTTAATTAGAAATT
* ** *
207592 AATTCGAAAAAAATAGAAAAAACGATATTAGAAACGTGAAAAGCCCTTCAATCTTTTTAACGTTA
131 AATTCG-AAAAAATAGAAAAAACGATATTAGAAACGTGAAAAGCCCTTCAATCATTTTGGCGTTG
* * * *
207657 AATTATATATTTTTATTAGTATTGTACTAAAAATTGAGGAAATAGTATTTTTGGTCAATTTTTGC
195 AATTATATATTTTTATGAGTATTGGACTAAATATTGAGGAAATAATATTTTTGGTCAATTTTTGC
* * * **
207722 AAAATTTTAGCCGAAATCGTGTATTAACCATCACTGTTTTTGGCC-AAAAATGCGTTCCGGTGAC
260 AAAATTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTT-GCCTAAAAACGCACTCCGGTGAC
* *
207786 CCAGCTCAATTTTGCATGATTTTTGGCGTCAAGACTCCTTGAAATATCTATTTTAAT-CTAACCA
324 CCAGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATACCTATTTTAATAC-AACCA
207850 AATCTCATCCATATTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCATGTTTCGATTTAAT
388 AATCTCATCCATATTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCATGTTTCGATTTAAT
* *
207915 TTGAAATTAATTCGGGATAAAAAGGAAAAACAATATCAGAAGTGTAAAAAGCCCTTCAATCTTTT
453 TAGAAATTAATTCAGGA-AAAAAGGAAAAACAATATCAGAAGTGTAAAAAGCCCTTCAATCTTTT
* ** * * *
207980 TGGCATTGAATTATATATT-TATTATGAGT-TTTGTGGCTAAGAAGT-GAGGAAAAATCTTTTGG
517 TGGCATTGAATTATATATTCT-TTATGAGTATTT-TAGAAAAAAAATCGAAGAAAAATCTTTTGG
* *
208042 GTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGAAAAAAACAC
580 GTCAATTTTTGCAAAATTTTAGCCGAAACCGTGTACTAACCATCACAGTTTTTGGAAAAAAACAC
* *** *
208107 GTTATGGGACCCGGCTC
645 GTTAGGGGACCAAACAC
*
208124 AATTTTGCATGATTTTTGGCGCCATGACTCTTTGAAATATCTATTTTCATGTATCCAAATCTCAG
1 AATTTTGCATGATTTTTGGCGCCATGACTCCTTGAAATATCTATTTTCATGTATCCAAATCTCAG
* * *
208189 CCACGTTAAATTTAAGGATTTGTTTTTACAAGCATCAGAATCGAGTTTCGATTTAATTAAAAATT
66 CCACGTTAGATTTAAAGATTTGTTTTTACAAGCATCAGAATCGAGTTTCGATTTAATTAGAAATT
* * *
208254 AATTCGAAAAAATAGAAAAAACGATACGTATTAGAAACGTGAAAAGCCCTTCGATCCTTTTGGCA
131 AATTCGAAAAAATAGAAAAAACG--A--TATTAGAAACGTGAAAAGCCCTTCAATCATTTTGGCG
* *
208319 TTGAATTATATATTTTTATGAGTATTGGACTAAATATTCAGGAAATAATATTTTGGGTCA
192 TTGAATTATATATTTTTATGAGTATTGGACTAAATATTGAGGAAATAATATTTTTGGTCA
208379 GACAGCAATT
Statistics
Matches: 808, Mismatches: 96, Indels: 22
0.87 0.10 0.02
Matches are distributed among these distances:
661 137 0.17
662 223 0.28
663 277 0.34
664 86 0.11
665 85 0.11
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (661 bp):
AATTTTGCATGATTTTTGGCGCCATGACTCCTTGAAATATCTATTTTCATGTATCCAAATCTCAG
CCACGTTAGATTTAAAGATTTGTTTTTACAAGCATCAGAATCGAGTTTCGATTTAATTAGAAATT
AATTCGAAAAAATAGAAAAAACGATATTAGAAACGTGAAAAGCCCTTCAATCATTTTGGCGTTGA
ATTATATATTTTTATGAGTATTGGACTAAATATTGAGGAAATAATATTTTTGGTCAATTTTTGCA
AAATTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGCCTAAAAACGCACTCCGGTGACCC
AGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATACCTATTTTAATACAACCAAAT
CTCATCCATATTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCATGTTTCGATTTAATTAG
AAATTAATTCAGGAAAAAAGGAAAAACAATATCAGAAGTGTAAAAAGCCCTTCAATCTTTTTGGC
ATTGAATTATATATTCTTTATGAGTATTTTAGAAAAAAAATCGAAGAAAAATCTTTTGGGTCAAT
TTTTGCAAAATTTTAGCCGAAACCGTGTACTAACCATCACAGTTTTTGGAAAAAAACACGTTAGG
GGACCAAACAC
Found at i:209459 original size:331 final size:326
Alignment explanation
Indices: 208669--210512 Score: 1755
Period size: 332 Copynumber: 5.6 Consensus size: 326
208659 CAACCTTACC
* * * * * *
208669 TGCAAAATTTTAGCCAAAATCGTGTACTAACCATCATGGTTTTAGGTTAAAAACGCATT-CTGGT
1 TGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCAGG-
* * * *
208733 ACCCCGGCTCAATTTTGCATGATTTTTGGCGCCAAAACTCCATT-AAATATCT-TTATAAATCTA
65 A-TCCGACACAATTTTGCATGATTTTTGGCGCCAAAACTCC-TTGAAATATCTATT-TTAATCTA
* * * *
208796 ACCAAATCTCAACCAGATTGGATTTAATGATCTGTTTTTACAAGCATCTA-AATCATGTTTCGAT
127 ACCAAATCTCATCCATATTGGATTTAAGGATTTGTTTTTACAAGCAT-TAGAATCATGTTTCGAT
208860 TTAATT----ATTAATTCGAGAAAAAAAGGGAAAACAATATTAG-AAGTGTAAAAAGCCCTTCAA
191 TTAATTAGAAATTAATTCGA-AAAAAAA-GGAAAACAATATTAGAAAGTG--AAAAGCCCTTCAA
* ** * * *
208920 TCTTTTTAGCGTTGACTTATATATTCTTTATGAGTAATGCATACAAAAAATTGAGGAAAAGTTTT
252 TCTTTTTGGCGTTGAAATATATATTCTTTATGAGTATTGGAT--AAAAAATTGAGGAAATGTTTT
208985 TCGGGTCAATTTT
315 T-GGGTCAATTTT
* * * *
208998 TGCAAAATTTTAGCCGAAATCGTGTACTAACTATCACTGTTTTTTTTTTTGCTAAAAACACGTTC
1 TGCAAAATTTTAGCCGAAATCGTGTACTAACCATCAC-G----GTTTTTGGCTAAAAACGCGTTC
*
209063 CAAGGATCCGACACAATTTTGCATGATTTTTGGCGCCATAACTCCTTGAAATATCTATTTTAATC
61 C-AGGATCCGACACAATTTTGCATGATTTTTGGCGCCAAAACTCCTTGAAATATCTATTTTAATC
* *
209128 TAACCAAATCTCATCCATATTGCATTTAAGGATTTGATTTTACAAGCATTAGAATCGA-GTTTCG
125 TAACCAAATCTCATCCATATTGGATTTAAGGATTTGTTTTTACAAGCATTAGAATC-ATGTTTCG
* **
209192 ATTTGATTAGAAATTAATTCGAAAAAAATAGGAAGAATGATATTAGAAACGTGAAAAGCCCTTCA
189 ATTTAATTAGAAATTAATTCGAAAAAAA-AGGAA-AACAATATTAGAAA-GTGAAAAGCCCTTCA
*
209257 ATCTTTTTGGCGTTGAAATATATATT-TTTATGAGTATTGGATTAAAAATTGAGGAAATGATATT
251 ATCTTTTTGGCGTTGAAATATATATTCTTTATGAGTATTGGATAAAAAATTGAGGAAATG-T-TT
*
209321 TTGGGTCGATTTT
314 TTGGGTCAATTTT
* *
209334 TGCAAAATTTTGGCCGAAATTGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCC-GG-
1 TGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCAGGA
* * * * *
209397 TGTCGCAGCTCAATTTTGCTTGATTTTTGGCGCCAAGACTCTTTGAAATATCTATTTTAATCTAA
66 T-CCG-A-CACAATTTTGCATGATTTTTGGCGCCAAAACTCCTTGAAATATCTATTTTAATCTAA
* * * **
209462 CCAAATCTCATCCGTATTGGATTTAAGGATTTTTTTTTACGAGCATCCGAATCATGTTTCGATTT
128 CCAAATCTCATCCATATTGGATTTAAGGATTTGTTTTTACAAGCATTAGAATCATGTTTCGATTT
* ** * *
209527 AATTAGAAATTTATTCGGGCAAAAAAGGAAAAACCATATCA-AAAGTGTAAAAAGCCCTTCAATC
193 AATTAGAAATTAATTC-GAAAAAAAAGG-AAAACAATATTAGAAAGTG--AAAAGCCCTTCAATC
* * * * *
209591 TTTTTGACGTT-AAATTATATATTCTTTATCAGTATTGCAGACAAAAATTGTGTAGAAATG-TTT
254 TTTTTGGCGTTGAAA-TATATATTCTTTATGAGTATTGGATA-AAAAATTGAG--GAAATGTTTT
* *
209654 CGGCTCAATTTT
315 TGGGTCAATTTT
* * * *
209666 TGCAAATTTTTAGCCGAAATTGTGTACTAACTATCACGGTTTTTATGCTAAAAACGCGTTCCAAG
1 TGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTT-GGCTAAAAACGCGTTCC-AG
*
209731 GATCCGACACAATTTTGCATGATTTTTGGCG-CAATAACTGCTTGAAATATCTATTTTAATCTAA
64 GATCCGACACAATTTTGCATGATTTTTGGCGCCAA-AACTCCTTGAAATATCTATTTTAATCTAA
* ** * * * ** ** * *
209795 CCAAATCTCATCCATATTTACGAGCATCA-GAATCGAGTTT-----CATTTTAATTA-G----AA
128 CCAAATCTCATCCATA-TT-GGA-TTTAAGGATTTGTTTTTACAAGCATTAGAATCATGTTTCGA
* * * ** *
209849 ATTAATTCGAAA--AA----AATAGGAA--AA-ACGATATTAGAAACGTGAAAAGCCCTTCAATC
190 TTTAATTAGAAATTAATTCGAAAAAAAAGGAAAACAATATTAGAAA-GTGAAAAGCCCTTCAATC
* * * * * *
209905 TTTTTAGCGTTGAAATGTATATT-TTCATGAATATTGGACT-AAAAATTGAGGAAATAATACTTT
254 TTTTTGGCGTTGAAATATATATTCTTTATGAGTATTGGA-TAAAAAATTGAGGAAAT-GT-TTTT
209968 GGGTCAATTTT
316 GGGTCAATTTT
* * *
209979 TGCAAATTTTTTGCCGAAATCGTGTACTAACCATCACTGTTTTTGGCTAAAAACGCGTTCC-GGT
1 TGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCAGG-
* * * * *
210043 GTCCCGACTCAATTTTGCATGATTTTTGACGCCAATACTCCATT-AAATATCT-TTATAAATCTA
65 AT-CCGACACAATTTTGCATGATTTTTGGCGCCAAAACTCC-TTGAAATATCTATT-TTAATCTA
* * ** *
210106 ACCAAATTTCAACCGCATTGGATTTAAGGATTTGTTTTTACGAGCATCTA-AATCATGTTTCGAT
127 ACCAAATCTCATCCATATTGGATTTAAGGATTTGTTTTTACAAGCAT-TAGAATCATGTTTCGAT
* * * *
210170 TTAATTA-AAACTAATGCGGAAAAAAAGGAAAAACAATATCAG-AAGTGTAAAAAGCCCTTCAAT
191 TTAATTAGAAATTAATTCGAAAAAAAAGG-AAAACAATATTAGAAAGTG--AAAAGCCCTTCAAT
** * * **
210233 CTTTTTGGCGTTGACTTATATATTCTTTATGAGTAATGCAGACAAAAAATTGAGGAAAAATTTTT
253 CTTTTTGGCGTTGAAATATATATTCTTTATGAGTATTG--GATAAAAAATTGAGGAAATGTTTTT
210298 CGGGTCAATTTT
316 -GGGTCAATTTT
* *
210310 TGCAAAATTTTAGCCAGAAATCGTGTACTAACTATCACGGTTTTTGGCTAAAAACGCCTTCCAAG
1 TGCAAAATTTTAGCC-GAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCC-AG
* * * * * *
210375 GATCCGACACAATTTTGCATGATTTTTGGCGCCATAAGTTCTTGAAATGTCTATTTTCATTTAAC
64 GATCCGACACAATTTTGCATGATTTTTGGCGCCAAAACTCCTTGAAATATCTATTTTAATCTAAC
* * *
210440 CAAATCTCATCCATATTGCATTTAAGGATTTGATTTTACGAGCATTAGAATCGA-GTTTCGATTT
129 CAAATCTCATCCATATTGGATTTAAGGATTTGTTTTTACAAGCATTAGAATC-ATGTTTCGATTT
*
210504 GATTAGAAA
193 AATTAGAAA
Statistics
Matches: 1242, Mismatches: 182, Indels: 178
0.78 0.11 0.11
Matches are distributed among these distances:
309 2 0.00
310 16 0.01
311 5 0.00
312 83 0.07
313 68 0.05
314 38 0.03
315 15 0.01
316 5 0.00
318 3 0.00
319 3 0.00
320 7 0.01
321 2 0.00
323 1 0.00
325 15 0.01
327 3 0.00
328 5 0.00
329 84 0.07
330 29 0.02
331 215 0.17
332 239 0.19
333 99 0.08
334 128 0.10
335 39 0.03
336 50 0.04
337 28 0.02
338 55 0.04
339 2 0.00
340 3 0.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (326 bp):
TGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCAGGA
TCCGACACAATTTTGCATGATTTTTGGCGCCAAAACTCCTTGAAATATCTATTTTAATCTAACCA
AATCTCATCCATATTGGATTTAAGGATTTGTTTTTACAAGCATTAGAATCATGTTTCGATTTAAT
TAGAAATTAATTCGAAAAAAAAGGAAAACAATATTAGAAAGTGAAAAGCCCTTCAATCTTTTTGG
CGTTGAAATATATATTCTTTATGAGTATTGGATAAAAAATTGAGGAAATGTTTTTGGGTCAATTT
T
Done.