Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019720.1 Corchorus olitorius cultivar O-4 contig19753, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141169

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1114--1183
36
1.9
36
91
0
113
21
10
8
60
1.55
2179--2225
25
1.9
24
95
4
85
55
8
6
29
1.55
3309--3476
86
2.0
86
95
0
300
24
18
20
36
1.95
3504--3530
13
2.1
13
100
0
54
14
14
0
70
1.17
5432--5783
116
3.0
116
99
0
686
27
18
9
45
1.79
6113--6227
58
2.0
58
89
3
178
31
14
21
32
1.94
7496--7565
36
1.9
36
88
5
106
20
10
10
60
1.57
8083--8492
205
2.0
200
96
2
757
43
8
10
36
1.70
30782--30807
13
2.0
13
100
0
52
30
15
0
53
1.42
41328--41355
13
2.2
13
100
0
56
7
14
17
60
1.55
41654--41704
17
3.1
16
86
8
66
21
19
21
37
1.95
49201--49228
5
5.6
5
100
0
56
60
0
0
39
0.97
50599--50651
26
2.0
26
96
0
97
13
11
22
52
1.71
51375--51444
35
2.0
35
100
0
140
31
14
20
34
1.92
77743--77799
26
2.1
27
96
3
107
31
7
12
49
1.67
80850--80902
25
2.1
25
82
10
63
41
18
11
28
1.85
81364--81398
14
2.6
14
90
4
54
28
17
2
51
1.59
94585--94618
14
2.3
15
90
5
52
23
0
0
76
0.79
99644--99716
31
2.4
31
97
0
137
60
2
16
20
1.48
99890--100138
125
2.0
125
87
0
363
42
16
14
26
1.87
121975--122028
18
3.1
18
78
10
67
27
1
3
66
1.19
122059--122101
15
2.9
15
79
6
52
51
4
2
41
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
129318--129347
14
2.1
15
93
6
53
46
6
3
43
1.46
130173--130464
143
2.0
144
96
2
541
37
8
19
34
1.83
130729--130969
121
2.0
121
98
0
464
21
36
15
26
1.93
130876--131044
86
2.0
86
93
0
293
25
30
17
26
1.97
132679--132719
21
1.9
22
90
5
66
51
4
17
26
1.65
133117--133153
19
1.9
19
88
0
56
37
16
8
37
1.78

Tables:   1

The End!