Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019723.1 Corchorus olitorius cultivar O-4 contig19756, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5454
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.38


Found at i:2483 original size:16 final size:16

Alignment explanation


    Indices: 2462--2495  Score: 68
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       2452 AATTTAGCCA

                            
       2462 GGAAGAAAGTATTTTG
          1 GGAAGAAAGTATTTTG

                            
       2478 GGAAGAAAGTATTTTG
          1 GGAAGAAAGTATTTTG

              
       2494 GG
          1 GG

       2496 GGTTTTATTC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29


Consensus pattern (16 bp):   
GGAAGAAAGTATTTTG
Done.