Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019726.1 Corchorus olitorius cultivar O-4 contig19759, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17139
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:10053 original size:24 final size:24

Alignment explanation


    Indices: 10025--10073  Score: 89
    Period size: 24  Copynumber: 2.0  Consensus size: 24

      10015 TGGTGCCTTG

                                *   
      10025 AAACATGACATTTTGTACACCGGT
          1 AAACATGACATTTTGTACACAGGT

                                    
      10049 AAACATGACATTTTGTACACAGGT
          1 AAACATGACATTTTGTACACAGGT

             
      10073 A
          1 A

      10074 GATTGCCCAA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29


Consensus pattern (24 bp):   
AAACATGACATTTTGTACACAGGT
Done.