Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019727.1 Corchorus olitorius cultivar O-4 contig19760, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6007
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33


Found at i:5909 original size:29 final size:30

Alignment explanation


    Indices: 5877--5943  Score: 109
    Period size: 31  Copynumber: 2.2  Consensus size: 30

       5867 ATGCAATTTG

                                          
       5877 GGATATAACGTTAC-AAAACAAGCAATTAA
          1 GGATATAACGTTACAAAAACAAGCAATTAA

                                 *         
       5906 GGATATAACGTTACGAAAAACGAGCAATTAA
          1 GGATATAACGTTAC-AAAAACAAGCAATTAA

                   
       5937 GGATATA
          1 GGATATA

       5944 GTCCGTCAGG


Statistics
Matches: 35,  Mismatches: 1, Indels: 2
        0.92            0.03        0.05

Matches are distributed among these distances:
  29   14  0.40
  31   21  0.60

ACGTcount: A:0.49, C:0.12, G:0.18, T:0.21


Consensus pattern (30 bp):   
GGATATAACGTTACAAAAACAAGCAATTAA

Done.