Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019728.1 Corchorus olitorius cultivar O-4 contig19761, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19786

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
581--648
21
3.3
21
73
22
81
50
8
8
32
1.64
1725--1776
25
2.2
24
78
18
56
40
0
7
51
1.30
12039--12070
2
16.0
2
100
0
64
50
0
0
50
1.00
12949--13124
22
8.0
22
72
8
126
36
13
13
36
1.84
13453--13513
22
2.8
21
78
7
68
39
8
18
34
1.80
13796--13901
44
2.4
45
82
4
126
39
12
14
33
1.83
13824--13902
22
3.6
22
75
13
81
40
12
10
36
1.77
13914--14115
22
9.0
22
77
7
147
37
11
17
33
1.85
13921--14108
44
4.2
44
74
10
175
37
11
17
33
1.85
13914--14104
66
2.8
66
77
5
204
37
10
18
33
1.85
14341--14383
21
2.0
22
90
4
70
44
4
0
51
1.22
16139--16294
48
3.0
54
87
11
252
25
14
7
52
1.67
16190--16264
24
3.1
24
63
14
64
25
14
6
53
1.65
18344--18495
76
2.0
76
82
7
184
25
28
28
17
1.97

Tables:   1

The End!