Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019729.1 Corchorus olitorius cultivar O-4 contig19762, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20540

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3016--3064
21
2.3
21
82
6
55
40
16
28
14
1.87
7087--7481
201
2.0
194
95
4
711
35
13
19
31
1.90
8064--8122
16
3.8
16
75
4
66
5
35
45
13
1.66
8219--8275
18
3.3
17
83
9
62
68
1
28
1
1.09
9048--9122
28
2.7
28
79
8
73
36
17
9
37
1.82
9221--9273
28
1.9
28
84
3
72
26
15
15
43
1.85
9617--9661
14
3.5
12
84
9
54
31
0
11
57
1.33
11551--11581
4
7.8
4
100
0
62
51
0
0
48
1.00
16656--16691
19
1.9
18
88
5
54
36
22
0
41
1.54
19287--19328
20
2.1
20
100
0
84
40
4
16
38
1.70

Tables:   1

The End!