Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019731.1 Corchorus olitorius cultivar O-4 contig19764, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62141

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1126--1190
31
2.1
32
82
8
80
12
20
32
35
1.89
1144--1202
31
1.9
31
82
6
75
11
18
37
32
1.87
2354--2403
10
4.9
10
75
22
50
40
2
2
56
1.22
2352--2427
12
6.7
11
68
25
52
44
1
1
52
1.17
2356--2407
16
3.5
14
73
14
50
40
1
1
55
1.22
2377--2434
21
2.9
21
78
19
61
46
1
0
51
1.11
10943--11183
43
5.7
40
82
8
257
40
25
11
23
1.87
10943--11183
41
5.7
42
81
7
265
40
25
11
23
1.87
10943--11182
84
2.8
84
90
4
385
40
25
10
23
1.87
14883--14917
18
1.9
18
88
0
52
17
8
37
37
1.80
16804--16852
12
4.2
12
70
19
50
63
8
4
24
1.40
16860--16921
23
2.7
22
77
18
56
50
6
1
41
1.38
16811--16940
22
6.0
22
70
12
61
54
7
3
33
1.47
16997--17049
26
2.1
26
89
3
81
47
0
3
49
1.19
16997--17049
25
2.1
25
89
3
79
47
0
3
49
1.19
17368--17395
2
14.0
2
100
0
56
50
0
0
50
1.00
24252--24520
145
1.9
143
85
3
360
37
7
2
52
1.45
27178--27292
60
1.9
60
86
10
164
42
26
12
18
1.85
27143--27295
60
2.6
58
76
16
152
43
26
13
16
1.85
37541--37588
24
2.0
24
100
0
96
37
20
20
20
1.95
44656--44691
2
17.5
2
88
5
54
50
2
2
44
1.31
50383--50416
15
2.3
15
94
0
59
17
5
29
47
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50846--50882
17
2.2
17
82
17
51
81
0
18
0
0.70
50847--50882
16
2.1
17
90
10
56
83
0
16
0
0.65
59433--59472
15
2.6
16
88
4
55
17
10
10
62
1.53

Tables:   1

The End!