Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019738.1 Corchorus olitorius cultivar O-4 contig19771, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17777

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6180--6204
6
4.2
6
100
0
50
32
0
16
52
1.44
9063--9129
31
2.2
31
86
5
93
46
11
19
22
1.82
9250--9328
31
2.5
31
93
4
133
35
16
11
36
1.85
9248--9384
31
4.5
29
83
5
130
31
15
13
39
1.86
10287--10320
16
2.1
17
88
5
52
50
0
0
50
1.00
10351--10490
31
4.6
31
79
5
133
38
11
17
32
1.85
10618--10684
31
2.2
31
92
5
111
20
17
11
49
1.79
11961--12054
45
2.2
43
88
7
138
38
19
5
37
1.74
14393--14558
22
7.5
22
74
11
106
39
16
12
31
1.86
14392--14558
66
2.5
66
82
5
178
38
16
13
31
1.87
14391--14639
44
5.7
44
74
6
139
39
16
11
32
1.85
14456--14639
22
8.4
22
71
13
103
40
16
11
32
1.84
14827--14936
22
5.0
22
76
6
89
32
10
13
42
1.79
14819--14981
66
2.4
67
75
7
152
33
10
12
43
1.77
14798--14957
44
3.6
44
75
5
135
35
10
12
41
1.77
14836--14957
22
5.5
22
77
9
88
32
8
15
43
1.76
16899--17562
22
29.7
22
71
13
256
32
17
12
37
1.87
16897--17562
44
14.9
44
72
12
306
32
17
12
37
1.87
16897--17281
66
5.8
66
74
7
307
32
18
13
35
1.90
17481--17604
44
2.8
43
80
7
124
33
11
14
40
1.82

Tables:   1

The End!