Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019740.1 Corchorus olitorius cultivar O-4 contig19773, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7403
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30


Found at i:6628 original size:13 final size:13

Alignment explanation


    Indices: 6610--6635  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       6600 TCTAATCATG

                         
       6610 AACGATAAATTAA
          1 AACGATAAATTAA

                         
       6623 AACGATAAATTAA
          1 AACGATAAATTAA

       6636 CTAGTATTTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.62, C:0.08, G:0.08, T:0.23


Consensus pattern (13 bp):   
AACGATAAATTAA
Done.