Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019745.1 Corchorus olitorius cultivar O-4 contig19778, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116630

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
338--398
27
2.5
24
79
15
63
57
4
0
37
1.20
947--1022
16
4.8
16
80
6
91
9
11
36
42
1.74
1031--1071
16
2.5
17
76
15
50
4
14
36
43
1.67
4500--4555
29
1.9
29
82
7
69
39
0
10
50
1.37
4796--4824
2
15.0
2
92
7
51
51
0
0
48
1.00
5200--5230
10
3.1
10
100
0
62
32
29
0
38
1.57
5396--5612
108
2.0
108
99
0
425
50
11
16
22
1.76
5644--5686
23
1.9
23
85
4
61
16
16
2
65
1.38
22814--23036
22
10.0
22
72
11
143
35
9
17
37
1.82
23083--23176
22
4.4
22
74
12
79
35
10
17
37
1.84
22927--23191
141
1.8
143
83
8
351
37
9
18
35
1.83
23049--23984
44
21.5
43
65
18
198
38
10
16
34
1.82
23102--23420
22
14.5
21
69
17
134
40
10
15
34
1.81
23680--23759
23
3.5
23
86
1
99
36
7
18
37
1.79
23579--23785
22
9.6
22
75
9
140
40
10
16
32
1.82
23770--23816
22
2.1
22
88
0
67
34
8
14
42
1.77
24043--24090
22
2.2
22
85
7
62
45
8
16
29
1.76
25047--25094
25
1.9
25
95
0
87
20
4
16
58
1.55
27078--27103
6
4.3
6
100
0
52
15
0
19
65
1.27
27115--27192
22
3.5
22
72
16
63
42
11
8
37
1.73
27166--27293
44
2.9
42
82
9
132
35
14
15
34
1.88
27226--27377
22
6.8
22
74
8
112
39
9
14
36
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27322--27385
22
2.9
22
76
0
65
42
9
12
35
1.75
27395--27502
22
5.0
22
67
13
73
37
8
16
37
1.79
27531--27649
22
5.5
22
69
16
72
37
7
16
37
1.78
27616--27657
22
1.9
22
100
0
84
42
14
14
28
1.84
27679--27755
29
2.5
31
79
6
95
31
25
12
29
1.93
30086--30114
2
14.5
2
100
0
58
51
0
0
48
1.00
32935--33006
29
2.4
29
74
4
72
30
20
11
37
1.88
36216--36240
12
2.1
12
100
0
50
24
8
24
44
1.80
55578--55602
10
2.5
10
100
0
50
20
0
36
44
1.52
68016--68053
12
3.2
12
88
7
51
23
10
23
42
1.85
74002--74066
23
3.2
20
72
21
62
26
1
3
69
1.12
74134--74196
19
3.1
19
72
9
54
28
3
3
65
1.24
76650--76703
27
2.0
27
89
7
83
57
12
9
20
1.63
77864--77940
16
4.8
16
76
6
66
53
28
9
9
1.63
77861--77940
32
2.5
31
76
8
81
51
30
10
8
1.66
78134--78226
16
5.8
16
70
5
62
38
34
8
18
1.81
78122--78224
32
3.2
32
81
0
107
38
33
9
17
1.83
85137--85170
15
2.3
15
90
10
52
35
0
11
52
1.38
91815--91903
44
2.0
44
95
0
160
47
19
2
31
1.62
110363--110414
25
2.1
25
82
7
61
53
1
3
40
1.30
111721--111749
2
14.5
2
100
0
58
48
0
0
51
1.00
112238--112305
33
2.0
36
91
8
115
48
14
13
23
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112732--112787
28
2.0
28
86
3
78
62
3
1
32
1.23

Tables:   1

The End!