Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019746.1 Corchorus olitorius cultivar O-4 contig19779, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10961

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
523--570
2
23.0
2
83
8
60
45
4
4
45
1.41
1607--1645
19
2.0
19
85
5
51
28
2
2
66
1.18
1606--1645
20
2.0
20
85
9
55
27
2
2
67
1.16
1811--2043
22
10.5
22
74
12
172
35
9
18
36
1.84
1812--3084
44
29.4
44
66
17
200
38
9
16
35
1.82
1808--2039
66
3.5
66
80
8
245
34
9
19
37
1.84
2048--2444
22
17.9
22
70
12
141
40
10
16
33
1.82
1902--2188
144
2.0
144
81
8
341
35
9
19
34
1.84
2525--3084
22
25.6
22
70
14
180
38
9
16
36
1.81
2525--2996
22
21.6
22
73
13
273
37
9
15
36
1.81
3054--3096
22
2.0
22
81
9
52
39
11
18
30
1.86
5490--5528
14
2.7
15
84
11
55
71
5
0
23
1.05
5925--6025
49
2.1
49
92
0
166
35
5
4
53
1.47
8920--8964
12
3.5
12
84
9
54
55
11
2
31
1.47
10394--10442
6
8.3
6
84
10
50
0
14
0
85
0.59
10397--10445
8
5.4
9
83
11
57
0
12
0
87
0.54

Tables:   1

The End!