genome.fa.s19747.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019747.1 Corchorus olitorius cultivar O-4 contig19780, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138122

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23--66	17	2.8	16	86	6	63	2	43	40	13	1.57
1507--1812	150	2.0	150	97	1	578	35	7	12	44	1.71
2227--2251	2	12.5	2	100	0	50	48	0	0	52	1.00
3479--3549	37	1.9	37	82	5	90	56	0	5	38	1.23
4590--4650	26	2.3	26	97	0	113	16	42	37	3	1.64
5695--5747	28	1.9	28	84	3	72	26	20	15	37	1.92
11341--11371	11	2.8	11	100	0	62	38	19	0	41	1.51
11728--11753	8	3.2	8	100	0	52	0	11	46	42	1.40
12703--12731	14	2.0	15	93	6	51	55	0	0	44	0.99
14191--14626	22	19.9	22	72	14	242	38	10	15	35	1.82
14191--15054	44	19.9	44	70	16	301	38	9	15	35	1.81
14191--14755	66	8.6	66	72	12	324	39	9	15	35	1.80
14294--14736	22	20.2	22	74	9	167	38	8	15	37	1.78
14522--14826	130	2.3	132	83	6	379	41	8	13	36	1.74
14582--14804	66	3.4	64	73	13	195	42	7	13	37	1.72
14785--14861	22	3.5	22	85	3	84	38	9	16	35	1.81
14870--15050	22	8.3	21	76	6	137	35	9	17	37	1.83
14870--15053	66	2.8	66	82	8	180	35	10	17	36	1.84
15382--15438	28	2.0	29	86	3	80	26	15	26	31	1.96
17639--17781	27	5.1	27	73	11	117	23	27	29	20	1.99
17814--17892	30	2.8	27	76	10	86	24	29	29	17	1.97
19131--19207	24	3.1	24	67	7	64	35	29	18	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19116--19216	50	2.1	48	88	3	148	35	27	18	17	1.94
26856--27118	130	2.0	130	88	5	388	50	1	10	37	1.48
31919--31953	14	2.6	14	95	4	63	37	11	0	51	1.38
32874--32965	40	2.3	41	94	3	168	34	0	17	47	1.48
33629--33884	22	11.5	22	69	10	81	35	14	14	35	1.86
33629--33884	44	5.7	44	72	11	164	35	14	14	35	1.86
41645--42640	47	22.0	47	92	5	1532	29	18	5	46	1.70
42008--42124	35	3.1	35	80	19	153	31	18	5	44	1.72
51599--51696	28	3.5	28	78	5	90	40	23	15	20	1.90
54467--55177	380	1.9	380	95	0	1278	18	17	22	40	1.91
61692--61744	26	2.0	26	96	0	97	32	15	15	37	1.88
61695--61754	26	2.3	26	88	0	84	35	16	15	33	1.90
64781--64813	17	1.9	17	88	11	50	39	0	0	60	0.97
66757--66820	30	2.1	30	100	0	128	46	0	18	34	1.49
67192--67261	9	8.2	9	69	12	58	37	31	17	14	1.89
67192--67267	25	3.0	25	100	0	152	36	31	15	15	1.90
67201--67252	16	3.7	16	67	32	55	38	30	15	15	1.88
69181--69364	62	3.0	62	98	0	359	22	20	26	30	1.98
76600--76652	17	3.2	17	74	15	58	32	1	18	47	1.60
76496--76643	76	1.9	76	93	0	251	39	4	16	40	1.67
80807--80898	46	2.0	46	93	0	157	44	13	16	26	1.84
97309--97333	4	6.2	4	100	0	50	48	28	0	24	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103687--103723	2	19.5	2	89	10	60	51	0	0	48	1.00
104515--104593	40	2.0	40	85	9	108	31	15	17	35	1.91
104723--104787	3	21.7	3	100	0	130	33	0	0	66	0.92
105381--105407	2	13.5	2	100	0	54	48	0	0	51	1.00
108608--108639	16	2.0	16	100	0	64	37	18	18	25	1.94
109499--110100	54	11.2	54	82	5	566	32	23	17	26	1.96
111573--111618	21	2.2	22	88	7	69	8	19	2	69	1.25
115146--115177	16	2.0	16	100	0	64	37	18	18	25	1.94
118858--118887	15	2.0	15	93	0	51	43	26	10	20	1.83
120685--120718	5	6.8	5	96	0	59	0	44	0	55	0.99
121785--121834	24	2.1	24	96	0	91	38	0	50	12	1.40
122872--122909	2	19.0	2	100	0	76	50	0	0	50	1.00

Tables:   1

The End!