Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019748.1 Corchorus olitorius cultivar O-4 contig19781, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 107816
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Found at i:12091 original size:21 final size:21
Alignment explanation
Indices: 12067--12114 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
12057 GCTAGGGCTG
*
12067 CTGGGCGTAT-GGCTGCTGTAA
1 CTGGGCGCATGGGC-GCTGTAA
* *
12088 CTGGGTGCATGGGCGCTGTAG
1 CTGGGCGCATGGGCGCTGTAA
12109 CTGGGC
1 CTGGGC
12115 ATCCATGGCA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.10, C:0.21, G:0.44, T:0.25
Consensus pattern (21 bp):
CTGGGCGCATGGGCGCTGTAA
Found at i:19661 original size:15 final size:16
Alignment explanation
Indices: 19619--19666 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 16
19609 GAGGTTTTTG
19619 TTAATTGTTTTCTTGA
1 TTAATTGTTTTCTTGA
*
19635 TTATTCACTGTTTTCTT-A
1 TTA---ATTGTTTTCTTGA
19653 TTAATTGTTTTCTT
1 TTAATTGTTTTCTT
19667 TAATTTTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
15 10 0.37
16 3 0.11
18 4 0.15
19 10 0.37
ACGTcount: A:0.17, C:0.10, G:0.08, T:0.65
Consensus pattern (16 bp):
TTAATTGTTTTCTTGA
Found at i:19980 original size:23 final size:23
Alignment explanation
Indices: 19954--20006 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
19944 TGTTTTTACT
19954 AAAAAAAAAAATTGCGTTTTCAA
1 AAAAAAAAAAATTGCGTTTTCAA
** **
19977 AAAAAAAAATTTTGCGTTTTTGA
1 AAAAAAAAAAATTGCGTTTTCAA
20000 AAAAAAA
1 AAAAAAA
20007 GGGGTGTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.57, C:0.06, G:0.09, T:0.28
Consensus pattern (23 bp):
AAAAAAAAAAATTGCGTTTTCAA
Found at i:24272 original size:17 final size:19
Alignment explanation
Indices: 24238--24276 Score: 64
Period size: 17 Copynumber: 2.2 Consensus size: 19
24228 AAGTTCATGT
24238 TTTGAAGACTTATTGAAGA
1 TTTGAAGACTTATTGAAGA
24257 TTTGAAGAC-T-TTGAAGA
1 TTTGAAGACTTATTGAAGA
24274 TTT
1 TTT
24277 ATTCCAAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 10 0.50
18 1 0.05
19 9 0.45
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.41
Consensus pattern (19 bp):
TTTGAAGACTTATTGAAGA
Found at i:30434 original size:13 final size:13
Alignment explanation
Indices: 30416--30446 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
30406 CTTGGCATGA
30416 GTGATGATTTTTG
1 GTGATGATTTTTG
30429 GTGATGATTTTTG
1 GTGATGATTTTTG
*
30442 TTGAT
1 GTGAT
30447 ACCTTGATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.00, G:0.29, T:0.55
Consensus pattern (13 bp):
GTGATGATTTTTG
Found at i:30816 original size:19 final size:19
Alignment explanation
Indices: 30794--30843 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
30784 GGGATGAAAT
30794 TAATTAATTATTAATTAAA
1 TAATTAATTATTAATTAAA
* *
30813 TAA-TAATTATTTTATTGAA
1 TAATTAATTA-TTAATTAAA
30832 TAATT-ATTATTA
1 TAATTAATTATTA
30844 CAAATAGCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 8 0.31
19 17 0.65
20 1 0.04
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
TAATTAATTATTAATTAAA
Found at i:34276 original size:3 final size:3
Alignment explanation
Indices: 34265--34302 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
34255 ACACAGTGAT
*
34265 ATA AT- ATA ATA ATA ATA AT- ATA ATT ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
34303 AAATCACTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 4 0.13
3 27 0.87
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:34284 original size:14 final size:14
Alignment explanation
Indices: 34265--34298 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
34255 ACACAGTGAT
34265 ATAATATAATAATA
1 ATAATATAATAATA
*
34279 ATAATATAATTATA
1 ATAATATAATAATA
34293 ATAATA
1 ATAATA
34299 ATAAAAATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
ATAATATAATAATA
Found at i:39972 original size:17 final size:17
Alignment explanation
Indices: 39950--39984 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
39940 CTCCTCTTTC
39950 ATGAAAACATTTTTTTT
1 ATGAAAACATTTTTTTT
*
39967 ATGAAAATATTTTTTTT
1 ATGAAAACATTTTTTTT
39984 A
1 A
39985 AACTACCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.03, G:0.06, T:0.54
Consensus pattern (17 bp):
ATGAAAACATTTTTTTT
Found at i:53976 original size:28 final size:30
Alignment explanation
Indices: 53943--54006 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 30
53933 TATGCAAATT
*
53943 GCCCCTAAACT-TTAATTTTGGACATTTTA
1 GCCCCTAAACTCTCAATTTTGGACATTTTA
*
53972 -CCCCTAAACTCTCAATTTTGGACTTTTTA
1 GCCCCTAAACTCTCAATTTTGGACATTTTA
54001 GCCCCT
1 GCCCCT
54007 CTCAAATGGG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
28 10 0.32
29 16 0.52
30 5 0.16
ACGTcount: A:0.23, C:0.28, G:0.09, T:0.39
Consensus pattern (30 bp):
GCCCCTAAACTCTCAATTTTGGACATTTTA
Found at i:55264 original size:31 final size:31
Alignment explanation
Indices: 55226--55298 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 31
55216 ATTTGACATA
* *
55226 TTGCCCCAAATTGAACTGGTTTTAGAACGTT
1 TTGCCCCAAATTGAACCGGTTTTAAAACGTT
55257 TTGCCCCAAATTGAACCGGTTTTAAAACGTT
1 TTGCCCCAAATTGAACCGGTTTTAAAACGTT
*
55288 TTGCTCCAAAT
1 TTGCCCCAAAT
55299 CAACCGAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.34
Consensus pattern (31 bp):
TTGCCCCAAATTGAACCGGTTTTAAAACGTT
Found at i:59304 original size:7 final size:7
Alignment explanation
Indices: 59292--59316 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
59282 AAATGCCAAA
59292 AAAAAAC
1 AAAAAAC
59299 AAAAAAC
1 AAAAAAC
59306 AAAAAAC
1 AAAAAAC
59313 AAAA
1 AAAA
59317 CCAAACTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:62187 original size:233 final size:233
Alignment explanation
Indices: 61780--62249 Score: 940
Period size: 233 Copynumber: 2.0 Consensus size: 233
61770 ACAGATCATA
61780 AATCATGTTATAGATGGCATGTGCTTAAAAAGGTCATGAAGATGCCTGCAAAACAACTAAAACAA
1 AATCATGTTATAGATGGCATGTGCTTAAAAAGGTCATGAAGATGCCTGCAAAACAACTAAAACAA
61845 AGAAGTGATGCTGCAGAACAGCATTCTTTTGTTGTTAACACTACTAACATCATATTTGCATCAAT
66 AGAAGTGATGCTGCAGAACAGCATTCTTTTGTTGTTAACACTACTAACATCATATTTGCATCAAT
61910 CTAACACTGAAAATCCTTGTTTTTTGCAATTTAACATCCAATTCTCTTTCATAGTGATTTCGTCT
131 CTAACACTGAAAATCCTTGTTTTTTGCAATTTAACATCCAATTCTCTTTCATAGTGATTTCGTCT
61975 TAATTTTATTTATCTTCTGACAACCCCAAAACAATGTG
196 TAATTTTATTTATCTTCTGACAACCCCAAAACAATGTG
62013 AATCATGTTATAGATGGCATGTGCTTAAAAAGGTCATGAAGATGCCTGCAAAACAACTAAAACAA
1 AATCATGTTATAGATGGCATGTGCTTAAAAAGGTCATGAAGATGCCTGCAAAACAACTAAAACAA
62078 AGAAGTGATGCTGCAGAACAGCATTCTTTTGTTGTTAACACTACTAACATCATATTTGCATCAAT
66 AGAAGTGATGCTGCAGAACAGCATTCTTTTGTTGTTAACACTACTAACATCATATTTGCATCAAT
62143 CTAACACTGAAAATCCTTGTTTTTTGCAATTTAACATCCAATTCTCTTTCATAGTGATTTCGTCT
131 CTAACACTGAAAATCCTTGTTTTTTGCAATTTAACATCCAATTCTCTTTCATAGTGATTTCGTCT
62208 TAATTTTATTTATCTTCTGACAACCCCAAAACAATGTG
196 TAATTTTATTTATCTTCTGACAACCCCAAAACAATGTG
62246 AATC
1 AATC
62250 CTCTTAGCTT
Statistics
Matches: 237, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
233 237 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (233 bp):
AATCATGTTATAGATGGCATGTGCTTAAAAAGGTCATGAAGATGCCTGCAAAACAACTAAAACAA
AGAAGTGATGCTGCAGAACAGCATTCTTTTGTTGTTAACACTACTAACATCATATTTGCATCAAT
CTAACACTGAAAATCCTTGTTTTTTGCAATTTAACATCCAATTCTCTTTCATAGTGATTTCGTCT
TAATTTTATTTATCTTCTGACAACCCCAAAACAATGTG
Found at i:64321 original size:180 final size:180
Alignment explanation
Indices: 64019--64377 Score: 718
Period size: 180 Copynumber: 2.0 Consensus size: 180
64009 TATCAGCACA
64019 TTTTTCGTATTTTCACTGGAAACATAGAAAATTCACTAATTAATGACACACCATCAACATATATA
1 TTTTTCGTATTTTCACTGGAAACATAGAAAATTCACTAATTAATGACACACCATCAACATATATA
64084 ACTGATCAAACAATTCTTAATTCCTTATATATGGGAGAAACACATTGAAAATGCATAGATGAAAC
66 ACTGATCAAACAATTCTTAATTCCTTATATATGGGAGAAACACATTGAAAATGCATAGATGAAAC
64149 GATAGCATAAGCTACAAAAGCTAAAATAGTTCCAGCTTACAGACAGAAAT
131 GATAGCATAAGCTACAAAAGCTAAAATAGTTCCAGCTTACAGACAGAAAT
64199 TTTTTCGTATTTTCACTGGAAACATAGAAAATTCACTAATTAATGACACACCATCAACATATATA
1 TTTTTCGTATTTTCACTGGAAACATAGAAAATTCACTAATTAATGACACACCATCAACATATATA
64264 ACTGATCAAACAATTCTTAATTCCTTATATATGGGAGAAACACATTGAAAATGCATAGATGAAAC
66 ACTGATCAAACAATTCTTAATTCCTTATATATGGGAGAAACACATTGAAAATGCATAGATGAAAC
64329 GATAGCATAAGCTACAAAAGCTAAAATAGTTCCAGCTTACAGACAGAAA
131 GATAGCATAAGCTACAAAAGCTAAAATAGTTCCAGCTTACAGACAGAAA
64378 ATATCAGCTA
Statistics
Matches: 179, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
180 179 1.00
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.28
Consensus pattern (180 bp):
TTTTTCGTATTTTCACTGGAAACATAGAAAATTCACTAATTAATGACACACCATCAACATATATA
ACTGATCAAACAATTCTTAATTCCTTATATATGGGAGAAACACATTGAAAATGCATAGATGAAAC
GATAGCATAAGCTACAAAAGCTAAAATAGTTCCAGCTTACAGACAGAAAT
Found at i:74160 original size:881 final size:882
Alignment explanation
Indices: 71830--77023 Score: 8998
Period size: 881 Copynumber: 5.9 Consensus size: 882
71820 ACATGGCTCA
*
71830 AACAGGAGGTAAAGGTAGAGTAAACTAAAAAGACTGTTTTTTTTTGGGTGGGAGGAAAGATAAAA
1 AACAGGAGGTAAAGGTAGAGTAAACTAAAAAGACTGTTTTTTTTT-TGTGGGAGGAAAGATAAAA
* *
71895 CATCAAAAACTGATTAACAAATAGACATAGGAAATTTAAACAAAGAAGCCATAACAAAAACTATG
65 CATCAAAAACTGATTAACAAATAGACATAGGAGATTTAAACAGAGAAGCCATAACAAAAACTATG
71960 GACAACGAAATAAAAGAGAAAAGGGAAACAAAGCTTGAAGGAAACGGAGTGAAGACTGAAACAAG
130 GACAACGAAATAAAAGAGAAAAGGGAAACAAAGCTTGAAGGAAACGGAGTGAAGACTGAAACAAG
* *
72025 GAAAAGGGCAAATTTCTAGGCTTTTTAACCGACTCAAATAATTTAAAACAAGG-AAAAAAACTCA
195 GAAAAGGGCAAATTTCTAGGCTTTTTAACCGACTCAAAGAATTTAAAACAAGGAAAAAAAACCCA
* * * *
72089 GATCTAGAAAGATTGAAATAGATTTGAGAGAAACTAACGCTAGAGGGAGGATGAAGAGAGAATAG
260 GATATAGAAAGATTGGAATAGATTTGAGAGAAACTAACGCTAGAGGGAGGATGAAGGGAGAATGG
* * *
72154 GCTTTGAAAATAAGGTTTTTTTGTGACCATCCGACGCCGTCCAGAGGTGGTCGCCGGTGGGTATG
325 GCTTTGAAAATAAGGTTTTTTTGTGACCATCCGACGCCGTCCAGAGGTGGCCGCCGGTGGCTACG
72219 GTGGTTGGCACGGCTAAGACATGGCAATCCGGTGGCCTGTATTATAGAGAGAAGTCAGAGCTTCT
390 GTGGTTGGCACGGCTAAGACATGGCAATCCGGTGGCCTGTATTATAGAGAGAAGTCAGAGCTTCT
72284 CTCTCTACGAAATTTGCCTTTAGAGCCTGACTTGCTTTAATATTGGAACACCATCTTTTTTTTTC
455 CTCTCTACGAAATTTGCCTTTAGAGCCTGACTTGCTTTAATATTGGAACACCATCTTTTTTTTTC
*
72349 TTAAAACATAGAAAACAAGTTTGGACCACTTAAGTAGTAGGCAGTTTTGATAGTCAAAAGATATT
520 TTAAAACATAGAAAACATGTTTGGACCACTTAAGTAGTAGGCAGTTTTGATAGTCAAAAGATATT
72414 CTGAAGACTGTATCATGAGTTTCAGATCAACCTTATTGCAAGACCAAGAACACGCAAACCTTATG
585 CTGAAGACTGTATCATGAGTTTCAGATCAACCTTATTGCAAGACCAAGAACACGCAAACCTTATG
* *
72479 AATATAAAAAGAATGCATAGTTGCTAGCTAAGACCTGAAAGCTCAACTGATAGTGAAGGGAAGGG
650 AATATAAAAAGGATGCATAGTTGCTAGCTAAGACCTGAAAGCTCAACTGATGGTGAAGGGAAGGG
*
72544 AAGGGGCCAATCGCAATGCGGAGACAAATCGTTTAAATCCTACAAGTTTAGGATAGGGATGTCAA
715 AGGGGGCCAATCGCAATGCGGAGACAAATCGTTTAAATCCTACAAGTTTAGGATAGGGATGTCAA
* *
72609 CTGTTTTTTTGGTGGGAGGAAAGGTAAAAACAATAAAAACTGATTAACAAACAGACATAGAAGAT
780 CTGTTTTTTTGGTGGGAGGAAAGGTAAAAACAACAAAAACTGATTAACAAACAGACATAGGAGAT
72674 TAAGCTTTTCCTATGTGACAAAGTGAATCGTGAAGCAT
845 TAAGCTTTTCCTATGTGACAAAGTGAATCGTGAAGCAT
*
72712 AACAGGAGGTAAAGGTAGAGTAAACTAAAAAGACTG-TTTTTTTTTGTAGGAGGAAAGATAAAAC
1 AACAGGAGGTAAAGGTAGAGTAAACTAAAAAGACTGTTTTTTTTTTGTGGGAGGAAAGATAAAAC
*
72776 ATCAAAAACTGATTAACAAATAGACATATGAGATTTAAACAGAGAAGCCATAACAAAAACTATGG
66 ATCAAAAACTGATTAACAAATAGACATAGGAGATTTAAACAGAGAAGCCATAACAAAAACTATGG
* *
72841 ACAACGAAATAAAAGAGAAAAGGGAAACGAAGCTTGAAGGAAACAGAGTGAAGACTGAAACAAGG
131 ACAACGAAATAAAAGAGAAAAGGGAAACAAAGCTTGAAGGAAACGGAGTGAAGACTGAAACAAGG
72906 AAAAGGGCAAATTTCTAGGCTTTTTAACCGACTCAAAGAATTTAAAACAAGGAAAAAAAACCCCA
196 AAAAGGGCAAATTTCTAGGCTTTTTAACCGACTCAAAGAATTTAAAACAAGGAAAAAAAA-CCCA
* * *
72971 GATCTAGAAAGATTGGAATAGATTTAAGAGAAACTAACGCTAGAGGGAGGATGGAGGGAGAATGG
260 GATATAGAAAGATTGGAATAGATTTGAGAGAAACTAACGCTAGAGGGAGGATGAAGGGAGAATGG
** *
73036 GCTTTGAAAATAAGGTTTTTTTGTGACCATCCGACGCCGTCCAGAGGTGGCCATCAGTGGCTACG
325 GCTTTGAAAATAAGGTTTTTTTGTGACCATCCGACGCCGTCCAGAGGTGGCCGCCGGTGGCTACG
73101 GTGGTTGGCACGGCTAAGACATGGCAATCCGGTGGCCTGTATTATAGAGAGAAGTCAGAGCTTCT
390 GTGGTTGGCACGGCTAAGACATGGCAATCCGGTGGCCTGTATTATAGAGAGAAGTCAGAGCTTCT
* * *
73166 CTGTCTACGAAATTTGCCTTTAGAGCCTGACTTGCTTTAATATTGGAACAACAT-TTTTTTTTAC
455 CTCTCTACGAAATTTGCCTTTAGAGCCTGACTTGCTTTAATATTGGAACACCATCTTTTTTTTTC
73230 TTAAAACATAGAAAACATGTTTGGACCACTTAAGTAGTAGGCAGTTTTGATAGTCAAAAGATATT
520 TTAAAACATAGAAAACATGTTTGGACCACTTAAGTAGTAGGCAGTTTTGATAGTCAAAAGATATT
* *
73295 CTGAAGACTGTATCATGAGTTCCAGATCAACCTTATTGCAAGACCAAGAACACGCAAAGCTTATG
585 CTGAAGACTGTATCATGAGTTTCAGATCAACCTTATTGCAAGACCAAGAACACGCAAACCTTATG
*
73360 AATATAAAAAGGATGCATAGTTGCTAGCTAAGACCTGAAAGCTCAACTGATGGTAAAGGGAA-GG
650 AATATAAAAAGGATGCATAGTTGCTAGCTAAGACCTGAAAGCTCAACTGATGGTGAAGGGAAGGG
*
73424 AGGGGGCCAATCGCAATGCGGAGACAAATCGTTTAAATCCTACAAGTTTAGGATAGAGATGTCAA
715 AGGGGGCCAATCGCAATGCGGAGACAAATCGTTTAAATCCTACAAGTTTAGGATAGGGATGTCAA
*
73489 CTGTTTTTCTGGTGGGAGGAAAGGTAAAAACAACAAAAACTGATTAACAAACAGACATAGGAGAT
780 CTGTTTTTTTGGTGGGAGGAAAGGTAAAAACAACAAAAACTGATTAACAAACAGACATAGGAGAT
73554 TAAGCTTTTCCTATGTGACAAAGTGAATCGTGAAGCAT
845 TAAGCTTTTCCTATGTGACAAAGTGAATCGTGAAGCAT
* *
73592 AACAGGAGTTAAAGGTAGAGTAAACTAAAAAAACTGTTTTTTTTTTTGGTGGGAGGAAAGATAAA
1 AACAGGAGGTAAAGGTAGAGTAAACTAAAAAGACTG-TTTTTTTTTT-GTGGGAGGAAAGATAAA
73657 ACATCAAAAACTGATTAACAAATAGACATAGGAGATTTAAACAGAGAAGCCATAACAAAAACTAT
64 ACATCAAAAACTGATTAACAAATAGACATAGGAGATTTAAACAGAGAAGCCATAACAAAAACTAT
*
73722 GGACAACGAAATAAAAGAGAAAAGGGAAACAAAGCTTGAAGGAAACAGAGTGAAGACTGAAACAA
129 GGACAACGAAATAAAAGAGAAAAGGGAAACAAAGCTTGAAGGAAACGGAGTGAAGACTGAAACAA
*
73787 GGAAATGGGCAAATTTCTAGGCTTTTTAACCGACTCAAAGAATTTAAAACAAGGAAAAAAAACCC
194 GGAAAAGGGCAAATTTCTAGGCTTTTTAACCGACTCAAAGAATTTAAAACAAGGAAAAAAAACCC
**
73852 AGATATAGAAAGATTGGAATAGATTTGAGAGAAACTAACGCTAGAGGGAAAATGAAGGGAGAATG
259 AGATATAGAAAGATTGGAATAGATTTGAGAGAAACTAACGCTAGAGGGAGGATGAAGGGAGAATG
* * *
73917 AGCTTTGAAAATAAGGTTTTTTTGTGACCATCCGACGCCGTACAGAAGTGGCCGCCGGTGGCTAC
324 GGCTTTGAAAATAAGGTTTTTTTGTGACCATCCGACGCCGTCCAGAGGTGGCCGCCGGTGGCTAC
* *
73982 GGTGGTTGGCACGGCTAAGAAATGGCGATCCGGTGGCCTGTATTATAGAGAGAAGTCAGAGCTTC
389 GGTGGTTGGCACGGCTAAGACATGGCAATCCGGTGGCCTGTATTATAGAGAGAAGTCAGAGCTTC
* *
74047 TCTCTTTACGAAATTTGCTTTTAGAGCCTGACTTGCTTTAATATTGG-ACACCATCTTTTTTTTT
454 TCTCTCTACGAAATTTGCCTTTAGAGCCTGACTTGCTTTAATATTGGAACACCATCTTTTTTTTT
74111 -TTAAAACATAGAAAACATGTTTGGACCACTTAAGTAGTAGGCAGTTTTGATAGTCAAAAGATAT
519 CTTAAAACATAGAAAACATGTTTGGACCACTTAAGTAGTAGGCAGTTTTGATAGTCAAAAGATAT
74175 TCTGAAGACTGTATCATGAGTTTCAGATCAACCTTATTGCAAGACCAAGAACACGCAAACCTTAT
584 TCTGAAGACTGTATCATGAGTTTCAGATCAACCTTATTGCAAGACCAAGAACACGCAAACCTTAT
*
74240 GACTATAAAAAGGATGCATAGTTGCTAGCTAAGACCTGAAAGCTCAACTGATGGTGAAGGGAAGG
649 GAATATAAAAAGGATGCATAGTTGCTAGCTAAGACCTGAAAGCTCAACTGATGGTGAAGGGAAGG
74305 GAGGGGG-CAATCGCAATGCGGAGACAAATCGTTTAAATCCTACAAGTTTAGGATAGGGATGTCA
714 GAGGGGGCCAATCGCAATGCGGAGACAAATCGTTTAAATCCTACAAGTTTAGGATAGGGATGTCA
74369 ACTGTTTTTTTGGTGGGAGGAAAGGTAAAAACAACAAAAACTGATTAACAAACAGACATAGGAGA
779 ACTGTTTTTTTGGTGGGAGGAAAGGTAAAAACAACAAAAACTGATTAACAAACAGACATAGGAGA
* *
74434 TTAAGTTTTTCCTATGTGACAAAGTGAACCGTGAAGCAT
844 TTAAGCTTTTCCTATGTGACAAAGTGAATCGTGAAGCAT
*
74473 AACAGGAGGTAAAAGTAGAGTAAACTAAAAAGACTGTTTTCTTTTTTGTGGGAGGAAAGATAAAA
1 AACAGGAGGTAAAGGTAGAGTAAACTAAAAAGACTGTTTT-TTTTTTGTGGGAGGAAAGATAAAA
* *
74538 CATCAAAAAATGATTAACAAATAGACATCGGAGATTTAAACAGAGAAGCCATAACAAAAACTATG
65 CATCAAAAACTGATTAACAAATAGACATAGGAGATTTAAACAGAGAAGCCATAACAAAAACTATG
* * * * * *
74603 GACAAAGAAACAAAAGAGAAAAGGGAAACAAAGCTTTAAGGAAATGGAGTGAATATTGAAACAAG
130 GACAACGAAATAAAAGAGAAAAGGGAAACAAAGCTTGAAGGAAACGGAGTGAAGACTGAAACAAG
* * *
74668 GAAAATGACAAATTTCTAGGCTTTTTAACCGACTCAAAGAATTTAAAACAAGGAAAAAAAAACCT
195 GAAAAGGGCAAATTTCTAGGCTTTTTAACCGACTCAAAGAATTTAAAACAAGG-AAAAAAAACCC
* * *
74733 AGATATACAAAGATTGGTATTGATTTGAGAGAAACTAACGCTAGAGGGAGGATGAAGGGAGAATG
259 AGATATAGAAAGATTGGAATAGATTTGAGAGAAACTAACGCTAGAGGGAGGATGAAGGGAGAATG
*
74798 GGCTTTGAAAATATGGTTTTTTTGTGACCATCCGACGCCGTCCAGAGGTGGCCGCCGGTGGCTAC
324 GGCTTTGAAAATAAGGTTTTTTTGTGACCATCCGACGCCGTCCAGAGGTGGCCGCCGGTGGCTAC
*
74863 GGTGGTTGGCACGGCTAAGACATGGCAATCCGGTGGCCTGTATTATAGAAAGAAGTCAGAGCTTC
389 GGTGGTTGGCACGGCTAAGACATGGCAATCCGGTGGCCTGTATTATAGAGAGAAGTCAGAGCTTC
* *
74928 TCTCTATACAAAATTTGCCTTTAGAGCCTGACTTGCTTTAATATTGGAACACCATCTTTTTTTTT
454 TCTCTCTACGAAATTTGCCTTTAGAGCCTGACTTGCTTTAATATTGGAACACCATCTTTTTTTTT
*
74993 CTTAAAACATAGAAAACATGTTTGGACCACTTAAGTAGTAGGCAGTTTTGATAGTCAAAAGATGT
519 CTTAAAACATAGAAAACATGTTTGGACCACTTAAGTAGTAGGCAGTTTTGATAGTCAAAAGATAT
* * *
75058 TCTGAAGACTATATCATGAGTTTCAGATCAATCTTATTGCAAGACCTAGAACACGCAAACCTTAT
584 TCTGAAGACTGTATCATGAGTTTCAGATCAACCTTATTGCAAGACCAAGAACACGCAAACCTTAT
75123 GAATATAAAAAGGATGCATAGTTGCTAGCTAAGACCTGAAAGCTCAACTGATGGTGAAGGGAAGG
649 GAATATAAAAAGGATGCATAGTTGCTAGCTAAGACCTGAAAGCTCAACTGATGGTGAAGGGAAGG
* *
75188 GAGGGGGCCAATCACAATGCGGAGACAAATCGTTTAAATCCTACAAGTTTAGGATAGGGATGTTA
714 GAGGGGGCCAATCGCAATGCGGAGACAAATCGTTTAAATCCTACAAGTTTAGGATAGGGATGTCA
* *
75253 ACTGTTTTTTTTGTGGGAGGAAAGGTAAAAACAACAAAAACTTATTAACAAACAGACATAGGAGA
779 ACTGTTTTTTTGGTGGGAGGAAAGGTAAAAACAACAAAAACTGATTAACAAACAGACATAGGAGA
* *
75318 TTAAGCTTTTCCTATGTGACAAAGTGAACCGTGAAGAAT
844 TTAAGCTTTTCCTATGTGACAAAGTGAATCGTGAAGCAT
* *
75357 AACCA-GAGGTAAAGGTAGAGTAAACTGAAAATACTGTTTTTTTTTTGTGGGAGGAAAGATAAAA
1 AA-CAGGAGGTAAAGGTAGAGTAAACTAAAAAGACTGTTTTTTTTTTGTGGGAGGAAAGATAAAA
* *
75421 CATCAAAAATTGATTAACAAATAGACATAGGAGATTTAAACAGAAAAGCCATAACAAAAACTATG
65 CATCAAAAACTGATTAACAAATAGACATAGGAGATTTAAACAGAGAAGCCATAACAAAAACTATG
*
75486 GACAACGAAATAAAAGAGAAAAGGGAAACAAAGCTTGAAGGAAACGGAGTGAAGATTGAAACAAG
130 GACAACGAAATAAAAGAGAAAAGGGAAACAAAGCTTGAAGGAAACGGAGTGAAGACTGAAACAAG
*
75551 GAAAAAGGCAAATTTCTAGGCTTTTTAACCGACTCAAAGAATTTAAAACAAGGAAAAAAAACCCA
195 GAAAAGGGCAAATTTCTAGGCTTTTTAACCGACTCAAAGAATTTAAAACAAGGAAAAAAAACCCA
*
75616 GATATAGAAAGATTGGAATAGATTTGAGAGAAACAAACGCTAGAGGGAGGATGAAGGGAGAATGG
260 GATATAGAAAGATTGGAATAGATTTGAGAGAAACTAACGCTAGAGGGAGGATGAAGGGAGAATGG
* * * **
75681 GCTTTGAAAATATGGTTTTTTTGTGACCATCCGACGCTGTCTAGAGGTGGATGCCGGTGGCTACG
325 GCTTTGAAAATAAGGTTTTTTTGTGACCATCCGACGCCGTCCAGAGGTGGCCGCCGGTGGCTACG
*
75746 GTGGTTGGCACGGCTAAGACATGGCAATCCGATGGCCTGTATTATAGAGAGAAGTCAGAGCTTCT
390 GTGGTTGGCACGGCTAAGACATGGCAATCCGGTGGCCTGTATTATAGAGAGAAGTCAGAGCTTCT
*
75811 CTCTCTATGAAATTTGCCTTTAGAGCCTGACTTGCTTTAATATTGGAACACCATCTTTTTTTTTT
455 CTCTCTACGAAATTTGCCTTTAGAGCCTGACTTGCTTTAATATTGGAACACCATC--TTTTTTTT
*
75876 TCTTAAAACATAGAAAACATGTTTGGACCACTTAAGTAGTAGGTAGTTTTGATAGTCAAAAGATA
518 TCTTAAAACATAGAAAACATGTTTGGACCACTTAAGTAGTAGGCAGTTTTGATAGTCAAAAGATA
75941 TTCTGAAGACTGTATCATGAGTTTCAGATCAACCTTATTGCAAGACCAAGAACACGCAAACCTTA
583 TTCTGAAGACTGTATCATGAGTTTCAGATCAACCTTATTGCAAGACCAAGAACACGCAAACCTTA
* *
76006 TGACTATTAAAAGGATGCATAGTTGCTAGCTAAGACCTGAAAGCTCAACTGATGGTGAAGGGAAG
648 TGAATATAAAAAGGATGCATAGTTGCTAGCTAAGACCTGAAAGCTCAACTGATGGTGAAGGGAAG
* * *
76071 GGAGGGGGCCAATCACAATGCGGAGATAAATCGTTTAAATCCTACAATTTTAGGATAGGGATGTC
713 GGAGGGGGCCAATCGCAATGCGGAGACAAATCGTTTAAATCCTACAAGTTTAGGATAGGGATGTC
76136 AACTGTTTTTTTGGTGGGAGGAAAGGTAAAAACAACAAAAACTGATTAACAAACAGACATAGGAG
778 AACTGTTTTTTTGGTGGGAGGAAAGGTAAAAACAACAAAAACTGATTAACAAACAGACATAGGAG
76201 ATTAAGCTTTTCCTATGTGACAAAGTGAATCGTGAAGCAT
843 ATTAAGCTTTTCCTATGTGACAAAGTGAATCGTGAAGCAT
* * *
76241 AACAGGAGGTAAAGGTAGAGTAAACTAAAAATAC----TTTTTTTTGTGGGAGGAAAGATAGAAT
1 AACAGGAGGTAAAGGTAGAGTAAACTAAAAAGACTGTTTTTTTTTTGTGGGAGGAAAGATAAAAC
*
76302 ATCAAAAACTGATTAACAAATAGACATAAGAGATTTAAACAGAGAAGCCATAACAAAAACTATGG
66 ATCAAAAACTGATTAACAAATAGACATAGGAGATTTAAACAGAGAAGCCATAACAAAAACTATGG
76367 ACAA--AAATAAAAGAGAAAAGGGAAACAAAGCTTGAAGGAAACGGAGTGAAGACTGAAACAAGG
131 ACAACGAAATAAAAGAGAAAAGGGAAACAAAGCTTGAAGGAAACGGAGTGAAGACTGAAACAAGG
76430 AAAAGGGCAAATTTCTAGGCTTTTTAACCGACTCAAAGAATTTAAAACAAGGAAAAAAAACCCCA
196 AAAAGGGCAAATTTCTAGGCTTTTTAACCGACTCAAAGAATTTAAAACAAGGAAAAAAAA-CCCA
* * *
76495 GATCTAGAAAGATTGG-ATCAGATTTGAGAGAAACTAACTCTAAAGGGAGGATGAAGGGAGAATG
260 GATATAGAAAGATTGGAAT-AGATTTGAGAGAAACTAACGCTAGAGGGAGGATGAAGGGAGAATG
* *
76559 GGCTTTGAAAATATGGTTTTTTTGTGACCATCCGACGCCGTCCAGAGGTGGCCGCCAGTGGCTAC
324 GGCTTTGAAAATAAGGTTTTTTTGTGACCATCCGACGCCGTCCAGAGGTGGCCGCCGGTGGCTAC
* *
76624 GGTGGTTGGCACGACTAAGACATGACAATCCGGTGGCCTGTATTATAGAGAGAAGTCAGAGCTTC
389 GGTGGTTGGCACGGCTAAGACATGGCAATCCGGTGGCCTGTATTATAGAGAGAAGTCAGAGCTTC
* * *
76689 TCTATCTACGAAATTTGCCTTTAGAACCTGACTTGCTTTAATATTGGAACACTATCTTTCTTTCT
454 TCTCTCTACGAAATTTGCCTTTAGAGCCTGACTTGCTTTAATATTGG-A-AC-A-C---C-ATCT
* *
76754 TTTTTTTTCATAAAACATAGAAAACATGTTTGGACCACTTAAGTAGTAGGCAGTTTTGATAGTTA
511 TTTTTTTTCTTAAAACATAGAAAACATGTTTGGACCACTTAAGTAGTAGGCAGTTTTGATAGTCA
*
76819 AAAGATATTCTGAAGACTGTATCATGAGTTTCAAATCAACCTTATTGCAAGACCAAGAACACGCA
576 AAAGATATTCTGAAGACTGTATCATGAGTTTCAGATCAACCTTATTGCAAGACCAAGAACACGCA
*
76884 AACCTTATGAATATAAAAAGGATACATAGTTGCTAGCTAAGACCTGAAAGCTCAACTGATGGTGA
641 AACCTTATGAATATAAAAAGGATGCATAGTTGCTAGCTAAGACCTGAAAGCTCAACTGATGGTGA
* * *
76949 AGGGAAGGGAGGGCGCCAATCGC-TTGGCGAAGACAAATCGTTTAAATCCTACAAGTTTAGGATA
706 AGGGAAGGGAGGGGGCCAATCGCAAT-GCGGAGACAAATCGTTTAAATCCTACAAGTTTAGGATA
77013 GGGATGTCAAC
770 GGGATGTCAAC
77024 GGGTAGGGTA
Statistics
Matches: 4099, Mismatches: 186, Indels: 51
0.95 0.04 0.01
Matches are distributed among these distances:
878 119 0.03
879 227 0.06
880 678 0.17
881 839 0.20
882 795 0.19
883 601 0.15
884 579 0.14
885 258 0.06
886 1 0.00
887 2 0.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.25
Consensus pattern (882 bp):
AACAGGAGGTAAAGGTAGAGTAAACTAAAAAGACTGTTTTTTTTTTGTGGGAGGAAAGATAAAAC
ATCAAAAACTGATTAACAAATAGACATAGGAGATTTAAACAGAGAAGCCATAACAAAAACTATGG
ACAACGAAATAAAAGAGAAAAGGGAAACAAAGCTTGAAGGAAACGGAGTGAAGACTGAAACAAGG
AAAAGGGCAAATTTCTAGGCTTTTTAACCGACTCAAAGAATTTAAAACAAGGAAAAAAAACCCAG
ATATAGAAAGATTGGAATAGATTTGAGAGAAACTAACGCTAGAGGGAGGATGAAGGGAGAATGGG
CTTTGAAAATAAGGTTTTTTTGTGACCATCCGACGCCGTCCAGAGGTGGCCGCCGGTGGCTACGG
TGGTTGGCACGGCTAAGACATGGCAATCCGGTGGCCTGTATTATAGAGAGAAGTCAGAGCTTCTC
TCTCTACGAAATTTGCCTTTAGAGCCTGACTTGCTTTAATATTGGAACACCATCTTTTTTTTTCT
TAAAACATAGAAAACATGTTTGGACCACTTAAGTAGTAGGCAGTTTTGATAGTCAAAAGATATTC
TGAAGACTGTATCATGAGTTTCAGATCAACCTTATTGCAAGACCAAGAACACGCAAACCTTATGA
ATATAAAAAGGATGCATAGTTGCTAGCTAAGACCTGAAAGCTCAACTGATGGTGAAGGGAAGGGA
GGGGGCCAATCGCAATGCGGAGACAAATCGTTTAAATCCTACAAGTTTAGGATAGGGATGTCAAC
TGTTTTTTTGGTGGGAGGAAAGGTAAAAACAACAAAAACTGATTAACAAACAGACATAGGAGATT
AAGCTTTTCCTATGTGACAAAGTGAATCGTGAAGCAT
Found at i:86203 original size:21 final size:21
Alignment explanation
Indices: 86142--86212 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 21
86132 ATGGTGATAT
* * * *
86142 GGTGTAAAGTTATCTTTATTT
1 GGTGTAATGGTATCATTATTA
**
86163 GGTGTAAT-G-ATCCCTATTA
1 GGTGTAATGGTATCATTATTA
86182 GGTGTAATGGTATCATTATTA
1 GGTGTAATGGTATCATTATTA
*
86203 GGTGTTATGG
1 GGTGTAATGG
86213 AAAATTAAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 15 0.38
20 1 0.03
21 24 0.60
ACGTcount: A:0.24, C:0.07, G:0.25, T:0.44
Consensus pattern (21 bp):
GGTGTAATGGTATCATTATTA
Found at i:86599 original size:14 final size:14
Alignment explanation
Indices: 86582--86622 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
86572 CTCAAGTTGA
* *
86582 AATCATCAAATTTT
1 AATCATGAAATTGT
86596 AATCATGAAATTGT
1 AATCATGAAATTGT
86610 AATCATGAAATTG
1 AATCATGAAATTG
86623 GAAGCAAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.37
Consensus pattern (14 bp):
AATCATGAAATTGT
Found at i:87531 original size:42 final size:44
Alignment explanation
Indices: 87480--87573 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 44
87470 AGTGCATTAC
*
87480 CTAA-ATTCTA-CTCCATCTATAGGTAATTCATCAAAATAAA-T
1 CTAATATTCTACCTCCATCTATAGATAATTCATCAAAATAAAGT
*
87521 CTAATATTCTACTCCTCCATCTCTAGATAATTCATCAAAATAAAGT
1 CTAATATTCTA--CCTCCATCTATAGATAATTCATCAAAATAAAGT
87567 -TAATATT
1 CTAATATT
87574 AATTGTTGCT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
41 4 0.09
42 6 0.13
45 35 0.76
46 1 0.02
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.36
Consensus pattern (44 bp):
CTAATATTCTACCTCCATCTATAGATAATTCATCAAAATAAAGT
Found at i:88912 original size:178 final size:178
Alignment explanation
Indices: 88604--88928 Score: 519
Period size: 178 Copynumber: 1.8 Consensus size: 178
88594 CCGATTAAGG
* *
88604 TGATTTAAGTGTCTATTAAAAGATTGTTCCATGATCTACAACTTTTATGAAGGACTCGAAAACTA
1 TGATTCAAGTGTCTATTAAAAGATTGTTCCATGATCTACAACTTTCATGAAGGACTCGAAAACTA
* * *
88669 AATTTAATGTTTCAAGTATCAAAAATGCTTCCGAAAAATTTGTCGTTTCGGTTAACGGGAATAGA
66 AATTTAATGTTTCAAGTATAAAAAATGCTTCCGAAAAATTAGTCGTTTCGGTTAACGGAAATAGA
88734 CGGTCCACTTAATATTATAAAACTTTTGCTCCAGTTGTCTAATTGAAA
131 CGGTCCACTTAATATTATAAAACTTTTGCTCCAGTTGTCTAATTGAAA
* * *
88782 TGATTCAAGTGTCTCTTGAAAGTTTGTTCCATGATCTACAACTTTCATGAAGGACTCGAAAACTA
1 TGATTCAAGTGTCTATTAAAAGATTGTTCCATGATCTACAACTTTCATGAAGGACTCGAAAACTA
* *
88847 AATTTATTG-TTCAAGGTATAAAAAATGCTTCC-AAAGAATTAGTTGTTTCGGTTAACGGAAATA
66 AATTTAATGTTTCAA-GTATAAAAAATGCTTCCGAAA-AATTAGTCGTTTCGGTTAACGGAAATA
*
88910 GACGGTCTACTTAATATTA
129 GACGGTCCACTTAATATTA
88929 CATAATTTGC
Statistics
Matches: 134, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
177 8 0.06
178 126 0.94
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.35
Consensus pattern (178 bp):
TGATTCAAGTGTCTATTAAAAGATTGTTCCATGATCTACAACTTTCATGAAGGACTCGAAAACTA
AATTTAATGTTTCAAGTATAAAAAATGCTTCCGAAAAATTAGTCGTTTCGGTTAACGGAAATAGA
CGGTCCACTTAATATTATAAAACTTTTGCTCCAGTTGTCTAATTGAAA
Found at i:92082 original size:34 final size:33
Alignment explanation
Indices: 92039--92103 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 33
92029 ACTTTAATTT
*
92039 AATGTATGAATGTATTAAAGAGATCCGTTGATAG
1 AATGTATGAACGTATTAAAGAGAT-CGTTGATAG
92073 AATGTATGAACGTATTAAAGAGATCGTTGAT
1 AATGTATGAACGTATTAAAGAGATCGTTGAT
92104 TCAACTTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 7 0.23
34 23 0.77
ACGTcount: A:0.38, C:0.06, G:0.23, T:0.32
Consensus pattern (33 bp):
AATGTATGAACGTATTAAAGAGATCGTTGATAG
Found at i:99833 original size:80 final size:80
Alignment explanation
Indices: 99700--99859 Score: 320
Period size: 80 Copynumber: 2.0 Consensus size: 80
99690 TATATAGCAC
99700 TCGGTTCATGTTTTTGATGAAGGGTTGTCAAACAATGGCTTGTGCGTGCAGACATTGCTTTGCCA
1 TCGGTTCATGTTTTTGATGAAGGGTTGTCAAACAATGGCTTGTGCGTGCAGACATTGCTTTGCCA
99765 CGGCAAAGAAGGCAG
66 CGGCAAAGAAGGCAG
99780 TCGGTTCATGTTTTTGATGAAGGGTTGTCAAACAATGGCTTGTGCGTGCAGACATTGCTTTGCCA
1 TCGGTTCATGTTTTTGATGAAGGGTTGTCAAACAATGGCTTGTGCGTGCAGACATTGCTTTGCCA
99845 CGGCAAAGAAGGCAG
66 CGGCAAAGAAGGCAG
99860 CGAAGATTGA
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (80 bp):
TCGGTTCATGTTTTTGATGAAGGGTTGTCAAACAATGGCTTGTGCGTGCAGACATTGCTTTGCCA
CGGCAAAGAAGGCAG
Found at i:99908 original size:18 final size:18
Alignment explanation
Indices: 99885--99920 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
99875 ACTCGACCCA
99885 TAAATTACAAAAGAAAAC
1 TAAATTACAAAAGAAAAC
99903 TAAATTACAAAAGAAAAC
1 TAAATTACAAAAGAAAAC
99921 AAAGCGAACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.67, C:0.11, G:0.06, T:0.17
Consensus pattern (18 bp):
TAAATTACAAAAGAAAAC
Found at i:102389 original size:1 final size:1
Alignment explanation
Indices: 102385--102427 Score: 68
Period size: 1 Copynumber: 43.0 Consensus size: 1
102375 AAAATTCAGA
**
102385 TTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
102428 AAAAAAGGCG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.00, C:0.05, G:0.00, T:0.95
Consensus pattern (1 bp):
T
Done.