Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019752.1 Corchorus olitorius cultivar O-4 contig19785, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42646

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1449--1479
10
3.0
10
90
9
53
87
0
0
12
0.55
3120--3145
13
2.0
13
100
0
52
15
0
30
53
1.42
5977--6138
54
3.0
54
89
4
238
33
14
13
38
1.85
7816--8354
22
24.7
22
70
11
154
37
14
9
39
1.77
8433--8599
88
1.9
88
83
4
221
35
13
8
41
1.75
8431--8602
22
7.8
22
72
2
85
36
13
8
41
1.75
8436--8625
44
4.3
43
72
9
127
35
12
8
43
1.72
8433--8626
88
2.2
87
81
6
214
35
12
8
43
1.73
8634--8685
20
2.5
22
84
6
72
36
13
9
40
1.77
10364--10396
12
2.6
13
85
9
50
12
0
18
69
1.18
12788--12823
13
2.8
13
82
0
54
47
0
0
52
1.00
13376--13437
22
2.8
22
85
0
79
30
3
19
46
1.65
13498--13931
22
19.9
21
70
11
153
37
10
17
34
1.84
13697--13755
23
2.6
24
86
7
79
42
10
11
35
1.76
13803--13917
43
2.7
43
79
4
124
35
13
16
33
1.88
14969--15016
9
4.6
11
87
12
59
56
0
0
43
0.99
17882--17926
19
2.4
18
85
10
56
42
2
2
53
1.25
18856--18913
26
2.1
28
87
6
84
37
20
18
22
1.94
19690--19874
22
8.5
22
73
13
134
40
10
14
35
1.79
19689--19751
21
3.0
21
79
9
65
44
11
19
25
1.83
19772--19874
42
2.4
42
80
8
109
37
10
12
38
1.78
22813--22881
22
3.2
22
85
2
86
39
7
13
40
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26289--26341
24
2.2
24
93
0
88
37
26
11
24
1.89
39540--39617
30
2.9
27
82
14
106
30
15
44
8
1.77
42266--42299
17
2.1
17
88
5
52
38
0
8
52
1.33
42409--42447
14
2.8
13
88
7
51
46
0
0
53
1.00

Tables:   1

The End!