genome.fa.s19753.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019753.1 Corchorus olitorius cultivar O-4 contig19786, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102597

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5369--5461	46	2.0	46	95	0	168	35	11	18	34	1.87
13904--13938	15	2.3	15	90	0	52	11	20	8	60	1.57
21589--21615	6	4.5	6	100	0	54	66	0	14	18	1.25
31245--31310	31	2.1	31	100	0	132	25	24	18	31	1.97
31669--31719	26	2.0	26	88	0	75	29	25	23	21	1.99
32998--33086	46	1.9	46	90	0	142	29	20	21	29	1.98
33262--33418	36	4.4	36	88	0	233	28	22	23	25	1.99
33262--33418	72	2.2	72	95	0	287	28	22	23	25	1.99
33570--33657	31	2.8	31	87	1	122	32	17	23	26	1.96
33664--33805	51	2.8	50	90	4	212	38	14	20	27	1.91
33816--33876	30	2.0	30	90	6	97	27	19	31	21	1.97
33863--34014	44	3.7	44	77	16	180	31	20	21	26	1.98
33911--33976	34	1.9	34	96	0	123	37	21	18	22	1.94
33869--34014	78	1.9	78	94	2	258	32	19	20	26	1.97
34222--34288	19	3.8	18	71	15	59	31	32	14	20	1.93
35009--35226	115	1.9	114	92	2	366	31	22	21	24	1.98
37060--37097	19	2.0	20	94	5	69	23	0	21	55	1.44
37274--37393	60	2.0	60	100	0	240	43	10	11	35	1.75
37902--37955	28	1.9	28	96	0	99	29	7	31	31	1.85
40249--40293	2	22.5	2	95	0	81	51	2	0	46	1.13
40975--41559	151	3.9	151	85	8	741	29	12	18	38	1.88
41019--41559	294	1.8	294	88	3	820	29	12	18	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41019--41575	296	1.9	293	86	3	796	30	12	18	38	1.88
41286--41662	152	2.5	151	80	4	391	30	12	20	36	1.90
50908--50966	2	29.5	2	100	0	118	0	0	49	50	1.00
52666--52704	20	2.0	20	89	0	60	35	30	15	17	1.91
56694--56734	16	2.6	16	88	0	55	41	7	2	48	1.44
65202--65230	2	15.0	2	92	7	51	48	0	0	51	1.00
65718--65745	2	14.0	2	100	0	56	50	0	0	50	1.00
66464--66524	31	2.0	31	83	3	79	36	3	18	42	1.66
72023--72104	41	2.0	42	92	2	139	25	17	6	51	1.68
74973--75020	25	1.9	24	83	8	60	56	0	2	41	1.11
74986--75028	22	2.1	21	83	12	54	65	0	0	34	0.93
78133--78167	18	1.9	18	94	0	61	51	5	5	37	1.50
80176--80324	47	3.2	47	81	4	158	46	7	38	7	1.60
80554--80594	16	2.5	17	80	11	50	51	0	0	48	1.00
81233--81274	21	2.0	21	95	0	75	23	16	35	23	1.95
82117--82154	19	2.0	20	89	5	60	68	0	21	10	1.19
83403--83559	48	3.1	51	85	8	221	44	18	12	24	1.84
83493--83630	71	1.9	71	88	1	204	46	18	11	23	1.82
83724--83828	55	1.9	55	86	7	151	40	21	11	25	1.87
83795--83882	21	4.3	20	78	12	90	42	22	10	25	1.85
83793--83873	39	2.0	40	90	2	128	39	23	11	25	1.88
85305--85351	16	2.9	17	81	12	55	46	6	17	29	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85844--85904	25	2.4	25	88	0	95	39	4	21	34	1.75
85876--85948	34	2.1	34	94	0	128	38	9	21	30	1.86
85884--85956	34	2.1	34	92	0	119	36	10	20	31	1.87
86962--87324	105	3.5	105	90	4	538	39	8	9	42	1.68
88437--88495	2	32.0	2	77	16	65	52	0	0	47	1.00
88437--88495	14	4.3	15	79	16	74	52	0	0	47	1.00
98092--98354	130	2.0	131	90	0	411	38	10	2	49	1.50
100540--100629	29	3.1	29	96	0	171	15	0	26	57	1.38
100550--100638	29	3.1	26	91	4	97	15	0	25	58	1.38
100583--100622	21	2.0	20	85	5	53	12	0	27	60	1.33
101719--101774	26	2.2	25	93	6	96	23	17	0	58	1.38

Tables:   1

The End!