Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019758.1 Corchorus olitorius cultivar O-4 contig19791, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151021

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20973--21010
11
3.5
11
89
10
51
39
0
2
57
1.12
22671--23276
322
1.9
321
96
0
1122
40
10
14
33
1.81
24993--25018
3
8.7
3
100
0
52
34
0
30
34
1.58
36594--36621
13
2.2
13
100
0
56
60
0
21
17
1.36
50683--50822
32
4.0
32
74
17
127
35
30
10
22
1.89
50671--50822
74
2.1
74
96
0
277
36
30
11
21
1.90
53302--53400
31
3.3
30
72
16
89
27
17
16
39
1.90
53327--53412
28
2.9
29
72
16
95
31
18
15
34
1.92
53296--53460
59
2.8
59
78
7
190
29
18
15
36
1.91
55649--55697
23
2.1
23
96
0
89
44
16
16
22
1.86
73380--73404
4
6.2
4
100
0
50
24
0
0
76
0.80
74944--74971
4
7.0
4
100
0
56
25
0
25
50
1.50
87718--87742
2
12.5
2
100
0
50
52
0
0
48
1.00
88095--88147
28
1.9
28
81
11
65
20
9
11
58
1.60
88176--88285
21
5.3
21
72
8
75
30
12
10
47
1.74
94692--94731
17
2.5
16
88
8
55
60
0
0
40
0.97
96817--96907
45
2.0
45
100
0
182
24
31
6
37
1.81
96822--96893
22
3.2
22
63
18
58
22
33
5
38
1.77
99055--99123
33
2.1
33
91
0
111
15
28
4
50
1.63
100063--100096
12
2.8
12
86
0
50
5
17
50
26
1.69
100506--100562
25
2.2
25
81
9
71
19
15
7
57
1.60
102423--102464
15
2.8
15
72
13
50
35
26
21
16
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105757--105794
19
2.0
20
89
5
60
60
7
2
28
1.38
105946--105973
3
9.3
3
100
0
56
32
0
0
67
0.91
110222--110251
2
15.0
2
92
0
51
50
46
3
0
1.18
110273--110315
4
10.5
4
97
2
77
76
0
23
0
0.78
118377--118429
28
1.9
27
85
11
72
60
11
7
20
1.55
119326--119368
18
2.4
17
82
17
52
65
16
2
16
1.38
119339--119368
6
5.0
6
100
0
60
66
16
0
16
1.25
122416--122452
14
2.4
16
78
17
51
78
16
5
0
0.93
123593--123618
9
2.9
9
100
0
52
65
0
34
0
0.93
126973--127029
23
2.4
24
88
2
80
21
8
17
52
1.71
128286--128424
31
4.5
31
78
8
149
33
26
22
17
1.96
130448--130522
28
2.5
32
79
14
79
36
18
6
38
1.77
130570--130643
31
2.4
30
80
10
87
32
14
20
32
1.93
133130--133173
4
11.0
4
100
0
88
25
0
0
75
0.81
138846--138892
14
3.3
14
82
11
51
42
0
2
55
1.12
148982--149025
21
2.1
21
95
0
79
20
25
20
34
1.97

Tables:   1

The End!