Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019759.1 Corchorus olitorius cultivar O-4 contig19792, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69829

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1989--2024
13
2.8
13
91
4
56
44
19
2
33
1.65
5721--5759
14
2.8
14
96
0
69
38
43
10
7
1.67
5775--5866
33
2.8
32
83
1
112
26
26
20
27
1.99
13280--13370
33
2.8
33
89
1
130
25
28
18
27
1.98
13291--13376
33
2.6
33
92
0
136
22
31
17
29
1.96
15886--15921
19
1.9
18
88
5
54
41
2
22
33
1.68
25555--25590
19
1.9
18
88
5
54
41
2
22
33
1.68
31368--31416
21
2.3
21
89
0
71
16
2
26
55
1.52
32315--32381
28
2.4
28
97
2
127
49
20
5
23
1.71
34035--34353
122
2.5
125
85
9
421
47
3
10
39
1.55
38817--38864
23
2.1
23
92
0
78
35
16
14
33
1.89
44991--45049
25
2.3
26
91
8
95
45
35
10
8
1.68
45716--45758
22
1.9
23
95
4
79
25
23
13
37
1.92
54829--54880
20
2.7
20
76
5
54
53
3
7
34
1.48
55880--55905
2
13.0
2
100
0
52
50
0
0
50
1.00
55894--55938
21
2.1
21
92
8
74
44
2
17
35
1.62
55965--56028
29
2.2
29
91
0
101
34
21
7
35
1.83
58585--58624
11
3.5
11
82
3
53
62
5
0
32
1.17
64112--64141
2
15.0
2
100
0
60
50
0
0
50
1.00
65613--65790
75
2.4
76
94
0
304
40
21
13
24
1.89
65724--65868
57
2.6
56
83
4
168
43
21
8
26
1.82
66897--66949
22
2.3
24
81
15
60
26
18
5
49
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67943--67971
2
14.5
2
100
0
58
51
0
0
48
1.00
69229--69274
23
2.0
23
87
8
67
13
4
19
63
1.46

Tables:   1

The End!