Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001976.1 Corchorus olitorius cultivar O-4 contig01976, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2126
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.36


Found at i:480 original size:24 final size:24

Alignment explanation


    Indices: 448--518  Score: 124
    Period size: 24  Copynumber: 3.0  Consensus size: 24

        438 GCACAACGCG

                *                   
        448 CGTCGGATCCGGATTAGTCAGGGC
          1 CGTCAGATCCGGATTAGTCAGGGC

                                *   
        472 CGTCAGATCCGGATTAGTCAAGGC
          1 CGTCAGATCCGGATTAGTCAGGGC

                                   
        496 CGTCAGATCCGGATTAGTCAGGG
          1 CGTCAGATCCGGATTAGTCAGGG

        519 TAAAACCCTG


Statistics
Matches: 44,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  24   44  1.00

ACGTcount: A:0.21, C:0.24, G:0.34, T:0.21


Consensus pattern (24 bp):   
CGTCAGATCCGGATTAGTCAGGGC
Done.