Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019765.1 Corchorus olitorius cultivar O-4 contig19798, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6534
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33


Found at i:1031 original size:28 final size:28

Alignment explanation


    Indices: 990--1064  Score: 73
    Period size: 28  Copynumber: 2.7  Consensus size: 28

        980 TTAAGATGTC

                    **               *  
        990 AAAATTACTGTTTTGCCCTTGGTCGGCT
          1 AAAATTACCATTTTGCCCTTGGTCGACT

                          *   *    *    
       1018 AAAATTACCATTTTACCCATGGTTGACT
          1 AAAATTACCATTTTGCCCTTGGTCGACT

                                 
       1046 -AAATTA-CAGTTTTGCCCTT
          1 AAAATTACCA-TTTTGCCCTT

       1065 AAATGCCGGA


Statistics
Matches: 38,  Mismatches: 8, Indels: 3
        0.78            0.16        0.06

Matches are distributed among these distances:
  26    2  0.05
  27   14  0.37
  28   22  0.58

ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39


Consensus pattern (28 bp):   
AAAATTACCATTTTGCCCTTGGTCGACT

Done.