genome.fa.s19768.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019768.1 Corchorus olitorius cultivar O-4 contig19801, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93121

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
685--743	30	2.0	30	100	0	118	35	6	20	37	1.79
9293--9328	19	1.9	18	88	5	54	27	22	8	41	1.82
13189--13615	210	2.0	210	95	0	775	32	17	14	34	1.90
15810--16007	99	2.0	100	84	4	256	40	14	10	34	1.80
17817--17860	20	2.2	20	92	8	72	45	9	0	45	1.35
17870--17930	26	2.5	24	82	15	79	65	8	1	24	1.29
18603--19763	335	3.5	328	78	9	1263	35	15	14	35	1.87
23570--23625	29	1.9	29	85	7	78	7	21	0	71	1.09
23565--23623	19	3.1	19	73	7	57	6	16	0	76	1.00
23726--23770	15	3.1	15	84	12	58	0	17	0	82	0.68
29770--29847	36	2.2	36	90	0	120	33	24	14	28	1.94
29985--30070	13	7.1	13	72	15	67	31	26	8	33	1.86
29984--30070	36	2.4	36	90	0	138	31	27	8	33	1.86
37894--37995	52	2.0	52	92	0	168	28	21	29	20	1.98
41591--41863	45	6.0	45	90	0	429	34	23	30	11	1.90
41598--41863	136	2.0	135	93	0	451	34	23	29	12	1.91
41989--42064	39	1.9	40	89	2	118	21	21	30	27	1.98
43862--43939	36	2.2	36	88	0	111	34	24	12	28	1.92
44077--44135	13	4.8	13	75	12	61	32	25	8	33	1.86
44076--44167	36	2.6	36	87	5	134	30	27	8	33	1.87
49166--49200	18	1.9	18	100	0	70	11	14	0	74	1.08
53779--53849	31	2.3	31	90	0	115	25	11	28	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61495--61544	25	2.0	25	92	0	82	14	34	16	36	1.88
63980--64043	27	2.4	27	83	0	83	26	12	15	45	1.82
63980--64054	27	2.8	27	76	8	80	24	14	18	42	1.88
64083--64170	27	3.3	27	83	10	85	20	10	25	44	1.83
64111--64294	93	2.0	92	81	9	214	16	11	29	41	1.85
64575--64643	29	2.5	28	83	4	86	17	23	17	42	1.89
65092--65145	27	2.0	27	88	0	81	16	29	29	24	1.97
65251--65384	37	3.5	37	71	9	106	14	23	31	30	1.95
65601--66056	50	9.1	50	83	0	563	23	25	17	34	1.96
69601--69632	16	2.0	16	100	0	64	56	12	6	25	1.59
82212--82304	22	4.2	22	71	8	64	35	18	9	36	1.84
82627--82675	17	2.9	17	85	8	64	22	22	22	32	1.98
82766--82845	23	3.5	23	84	3	99	41	11	6	41	1.66
82722--82926	22	9.5	22	70	10	111	37	13	9	40	1.77
82946--83024	22	3.6	22	76	10	81	31	17	8	41	1.80
83095--83153	22	2.7	21	77	15	57	35	16	11	35	1.86
83094--83198	44	2.5	42	81	6	104	39	16	8	36	1.79
83250--83324	22	3.5	22	71	10	73	34	12	6	46	1.67
83253--83364	22	5.0	21	68	19	66	31	13	9	45	1.76
83431--83622	65	2.9	66	80	6	181	38	16	9	35	1.81
83428--83661	22	10.5	22	73	9	179	38	16	9	35	1.81
85693--85761	21	3.2	21	85	6	102	26	10	20	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85693--85761	23	3.2	22	86	10	106	26	10	20	43	1.83
90281--90446	43	3.8	43	82	3	188	42	12	11	33	1.78
90279--90463	22	8.4	22	75	7	162	42	11	11	34	1.79
90274--90463	44	4.3	44	80	4	195	41	11	12	34	1.79
90533--90625	22	4.2	22	79	5	98	32	7	18	41	1.78
90539--90633	44	2.2	44	86	0	127	31	8	18	41	1.81
90573--90633	22	2.8	22	80	9	70	29	9	21	39	1.85

Tables:   1

The End!