Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019776.1 Corchorus olitorius cultivar O-4 contig19809, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64611

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
731--1344
307
2.0
305
97
0
1156
35
11
12
40
1.79
1886--1927
16
2.6
16
88
7
59
73
0
4
21
1.01
1897--1927
16
1.9
16
100
0
62
70
0
6
22
1.09
3015--3091
29
2.6
30
81
6
102
31
24
11
32
1.91
3262--3294
12
2.8
12
90
9
50
66
27
0
6
1.15
6778--6846
26
2.7
26
95
0
120
36
15
13
34
1.87
13850--13933
42
2.0
42
100
0
168
28
19
16
35
1.93
13974--14000
13
2.1
13
100
0
54
33
22
14
29
1.94
22133--22440
38
8.1
38
86
5
426
37
18
19
24
1.94
22084--22186
51
2.1
50
83
7
129
35
22
18
23
1.95
22133--22596
115
4.0
113
81
7
447
36
19
19
25
1.94
22133--22479
77
4.5
75
86
5
414
36
19
19
24
1.95
22422--22511
39
2.3
39
98
0
171
31
24
21
23
1.98
22180--22597
38
10.9
37
83
6
376
36
18
19
25
1.94
42219--42258
15
2.6
16
88
4
55
15
10
12
62
1.54
46777--46806
12
2.6
11
90
10
51
90
0
0
10
0.47
48975--49014
15
2.6
16
88
4
55
17
10
10
62
1.53
56474--56498
13
1.9
13
100
0
50
16
0
28
56
1.41
56809--56859
19
2.7
19
77
14
61
47
0
1
50
1.12
60523--60548
13
2.0
13
100
0
52
53
30
0
15
1.42

Tables:   1

The End!