Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019777.1 Corchorus olitorius cultivar O-4 contig19810, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29241

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1550--1587
14
2.6
14
87
4
58
47
0
0
52
1.00
2147--2243
5
19.2
5
69
17
58
39
7
1
52
1.36
2173--2241
8
8.9
8
74
25
60
39
8
0
52
1.33
2161--2243
23
3.7
23
91
3
134
37
8
0
54
1.31
2167--2233
13
5.6
13
80
20
92
38
8
0
52
1.33
6818--6882
26
2.6
25
80
2
76
36
33
15
13
1.87
7570--7625
6
9.0
6
80
9
51
76
0
17
5
0.96
7571--7620
13
3.8
13
72
17
50
76
0
18
6
0.99
7570--7620
19
2.6
20
79
14
61
76
0
17
5
0.98
14527--14556
13
2.3
13
94
0
51
90
0
10
0
0.47
15432--15470
18
2.2
18
86
4
53
23
10
10
56
1.63
19487--19572
32
2.7
32
98
0
163
31
15
10
43
1.80
23010--23156
31
4.7
31
83
3
143
36
24
21
18
1.95
23010--23156
62
2.4
62
82
0
168
36
24
21
18
1.95
23643--23750
54
2.0
54
88
0
162
25
8
23
43
1.81
23727--23816
45
2.0
45
91
0
144
37
13
26
22
1.91
23933--23981
2
24.5
2
100
0
98
51
0
48
0
1.00
23988--24020
15
2.2
15
100
0
66
54
24
6
15
1.63
25395--25426
16
1.9
17
93
6
57
87
6
6
0
0.67
25662--25706
16
2.9
15
86
6
54
6
17
35
40
1.76
25662--25753
32
2.9
31
78
12
89
9
16
35
38
1.82
27400--27471
31
2.3
31
75
13
76
61
8
4
26
1.43

Tables:   1

The End!