Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019781.1 Corchorus olitorius cultivar O-4 contig19814, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70373

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2257--2297
12
3.3
13
76
10
50
51
7
2
39
1.43
3663--3710
20
2.5
19
83
6
53
6
20
0
72
1.05
3664--3720
26
2.1
27
83
3
71
3
21
0
75
0.95
3664--3757
8
10.8
8
71
17
62
2
21
0
76
0.89
3669--3754
44
1.9
45
86
6
122
2
22
0
75
0.91
3706--3763
18
3.1
18
88
11
82
0
24
0
75
0.80
3685--3735
25
2.0
27
88
7
79
0
23
0
76
0.79
3707--3763
19
3.0
19
94
5
98
0
22
0
77
0.77
17338--17387
5
10.4
5
79
16
61
60
2
0
38
1.09
17328--17387
19
3.2
19
81
13
70
60
1
0
38
1.07
17339--17386
12
4.3
11
82
12
62
58
2
0
39
1.10
17341--17387
17
2.8
16
81
18
60
59
2
0
38
1.09
17338--17389
14
3.7
13
82
14
59
59
1
0
38
1.08
19592--19621
2
15.0
2
100
0
60
50
0
0
50
1.00
20794--21207
30
13.7
30
95
0
675
29
20
20
29
1.97
20755--21241
30
15.6
32
91
4
149
30
19
19
30
1.96
23253--23315
32
1.9
33
83
3
83
31
22
20
25
1.98
25606--25657
23
2.2
23
82
3
59
23
28
25
23
1.99
28542--28654
58
1.9
58
87
7
167
31
13
21
33
1.92
29907--29976
36
1.9
36
91
0
113
21
10
8
60
1.55
30486--30895
204
2.0
201
96
1
748
43
8
11
37
1.70
38577--38661
22
3.9
21
81
3
80
37
7
12
42
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38606--38666
22
2.8
22
89
0
95
40
8
11
39
1.71
41186--41215
15
1.9
16
93
6
53
43
6
0
50
1.28
41559--41685
60
2.1
60
85
2
166
37
16
18
27
1.92
41574--41687
60
1.9
60
89
3
176
35
16
19
28
1.93
42155--42212
19
2.9
19
87
5
80
36
12
22
29
1.90
44250--44311
27
2.2
29
80
5
74
40
11
27
20
1.87
47634--47679
20
2.2
23
81
14
55
21
2
10
65
1.35
48364--48406
14
3.0
14
79
3
50
81
0
13
4
0.84
48352--48402
22
2.3
23
86
10
79
80
0
11
7
0.90
54323--54357
10
3.5
10
100
0
70
8
22
40
28
1.84
55909--55939
7
4.6
7
96
4
55
90
0
9
0
0.46
56635--56690
26
2.2
26
86
0
76
30
0
19
50
1.48
56657--56683
4
6.8
4
100
0
54
25
0
22
51
1.48
56912--57098
98
1.9
98
98
0
365
47
10
9
32
1.70

Tables:   1

The End!