Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019788.1 Corchorus olitorius cultivar O-4 contig19821, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44999

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5665--5720
2
29.5
2
82
10
73
48
0
0
51
1.00
6295--6328
2
17.0
2
100
0
68
50
0
0
50
1.00
7070--7109
21
2.0
19
85
9
53
20
2
30
47
1.63
7106--7154
25
2.0
25
95
0
89
36
16
32
14
1.89
11992--12016
13
1.9
13
100
0
50
48
0
8
44
1.32
12029--12092
33
1.9
33
90
0
101
17
26
37
18
1.93
13153--13214
30
2.1
30
96
0
115
25
24
4
45
1.73
14213--14238
13
2.0
13
100
0
52
46
15
15
23
1.83
20998--21041
23
1.9
23
90
0
70
34
13
13
38
1.84
26811--26856
11
4.2
11
86
10
67
39
26
15
19
1.91
26807--26852
22
2.1
22
95
0
83
36
30
15
17
1.91
27006--27049
21
2.0
21
86
8
61
59
4
6
29
1.44
27306--27829
22
24.2
21
69
16
189
35
15
8
39
1.79
27654--27773
60
2.0
61
87
8
174
36
18
8
36
1.81
27958--28335
22
17.0
22
68
15
179
34
16
9
39
1.81
27914--28310
22
17.8
22
69
15
113
35
15
9
39
1.80
28337--28394
22
2.7
21
78
5
62
37
17
8
36
1.80
28339--28411
22
3.3
21
75
7
58
42
16
6
34
1.75
28339--28424
44
1.9
45
81
13
106
41
16
8
33
1.78
28416--28545
22
5.9
22
69
15
81
37
19
9
33
1.83
29603--29629
6
4.5
6
100
0
54
51
14
0
33
1.43
30289--30323
2
17.0
2
94
5
61
48
2
0
48
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31388--31468
42
1.9
42
94
0
144
29
7
14
48
1.71
44798--44863
31
2.0
32
85
11
89
15
39
28
16
1.89

Tables:   1

The End!