Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019790.1 Corchorus olitorius cultivar O-4 contig19823, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 619

Length: 1032
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28


Found at i:251 original size:22 final size:20

Alignment explanation


    Indices: 209--255  Score: 58
    Period size: 22  Copynumber: 2.2  Consensus size: 20

        199 AAACACAAAA

                                
        209 CAAAAATTTTTTTTATGACG
          1 CAAAAATTTTTTTTATGACG

                            * *   
        229 CAAAAATTCTATTTTTTTTACG
          1 CAAAAATT-T-TTTTTATGACG

                 
        251 CAAAA
          1 CAAAA

        256 CAAAACCGAT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  20    8  0.35
  21    1  0.04
  22   14  0.61

ACGTcount: A:0.38, C:0.13, G:0.06, T:0.43


Consensus pattern (20 bp):   
CAAAAATTTTTTTTATGACG
Done.