genome.fa.s19791.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019791.1 Corchorus olitorius cultivar O-4 contig19824, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38403

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
833--858	9	2.9	9	100	0	52	34	23	7	34	1.83
1970--2038	34	2.1	34	91	2	113	27	36	13	23	1.92
2211--2267	10	5.6	10	82	12	55	3	15	3	77	1.05
2218--2270	5	10.8	5	80	11	65	3	15	1	79	0.96
2218--2270	20	2.7	20	88	8	74	3	15	1	79	0.96
2507--2577	34	2.1	34	94	0	124	39	21	12	26	1.89
6275--6504	52	4.4	52	93	2	383	39	13	16	30	1.87
6315--6398	25	3.3	25	65	6	69	42	10	16	29	1.82
7506--7665	45	3.6	45	96	0	286	35	23	8	33	1.84
8021--8048	14	2.0	14	100	0	56	21	21	7	50	1.72
12468--12733	145	1.8	145	94	1	471	31	19	24	23	1.98
14738--14815	32	2.4	32	100	0	156	30	5	32	32	1.80
15575--15625	27	1.9	27	88	4	77	17	17	27	37	1.93
19331--19390	22	2.9	22	76	19	65	35	20	6	38	1.79
19343--19378	18	1.9	18	88	5	54	36	22	2	38	1.69
22449--23001	40	13.8	40	79	3	461	16	23	20	39	1.92
22446--23001	80	6.9	80	79	2	564	16	23	20	39	1.91
22450--22998	120	4.6	120	80	2	539	16	23	20	39	1.92
26981--27179	35	5.6	35	86	5	258	29	16	17	37	1.91
31197--31245	25	1.9	26	91	4	82	30	4	16	48	1.64
32660--32760	22	4.5	22	80	13	100	41	14	9	33	1.79
32828--32990	22	7.6	20	76	16	141	35	14	9	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32828--32967	44	3.2	44	82	3	167	35	15	9	40	1.79
33711--34302	22	26.5	22	71	11	330	38	11	14	35	1.83
34054--34241	42	4.3	42	71	15	130	39	9	13	37	1.78
34478--34572	44	2.2	44	94	0	163	47	8	12	31	1.71
34450--34660	22	9.8	22	70	16	95	41	7	14	36	1.74
34577--34656	23	3.5	23	82	1	90	36	6	13	43	1.70
34572--34811	22	10.8	22	67	9	76	35	10	15	37	1.82
35820--35849	1	30.0	1	100	0	60	100	0	0	0	0.00
37304--37360	12	4.8	11	73	14	51	50	10	3	35	1.54

Tables:   1

The End!