Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019794.1 Corchorus olitorius cultivar O-4 contig19827, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43871

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99--130
15
2.1
15
94
0
55
78
0
21
0
0.76
174--255
30
2.7
31
92
3
139
32
15
9
41
1.80
420--477
29
1.9
30
82
6
73
48
13
10
27
1.75
6761--6811
24
2.1
25
85
3
68
70
3
7
17
1.27
6830--6860
13
2.4
13
94
0
53
22
9
22
45
1.81
7697--7738
22
1.9
22
95
0
75
9
21
57
11
1.63
8963--9041
37
2.1
38
88
4
115
36
8
17
36
1.81
10367--10407
20
2.0
20
95
0
73
39
12
14
34
1.84
11517--11587
37
1.9
37
94
0
124
38
8
16
36
1.80
18464--18566
50
2.1
50
100
0
206
17
5
31
45
1.72
19250--19310
31
1.9
32
83
6
79
24
26
24
24
2.00
19378--19402
13
1.9
13
100
0
50
8
48
20
24
1.76
22519--22556
11
3.5
11
85
10
51
57
2
0
39
1.12
22879--22939
31
2.1
31
84
9
83
32
1
9
55
1.42
23065--23104
11
3.5
11
82
3
53
57
5
0
37
1.21
24248--24304
30
1.9
30
85
0
78
21
14
5
59
1.54
24748--24796
25
2.0
25
100
0
98
12
32
20
34
1.90
25117--25141
7
3.6
7
100
0
50
32
28
0
40
1.57
25675--25723
25
2.0
25
100
0
98
12
32
20
34
1.90
26269--26436
86
1.9
90
89
4
263
32
14
6
45
1.71
26517--26574
22
2.8
21
82
10
66
32
8
10
48
1.68
31423--31560
69
2.0
68
90
5
217
45
6
27
20
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31673--31724
24
2.2
23
82
6
59
44
7
9
38
1.66
31716--31786
30
2.4
30
95
4
126
38
14
21
26
1.91
34048--34078
15
2.1
15
93
0
53
19
22
9
48
1.78
34504--34584
41
1.9
43
95
5
148
45
14
4
34
1.67
34820--34860
19
2.3
17
87
8
55
78
7
14
0
0.96
35100--35132
7
4.9
7
92
7
59
30
39
15
15
1.88
38814--38978
81
2.0
82
90
3
260
27
20
16
35
1.94

Tables:   1

The End!