genome.fa.s19795.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019795.1 Corchorus olitorius cultivar O-4 contig19828, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97481

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1730--1754	11	2.3	11	100	0	50	52	24	0	24	1.48
1785--1832	21	2.3	20	83	13	62	20	16	2	60	1.46
2123--2182	31	1.9	31	83	6	77	20	41	18	20	1.90
11689--11721	16	2.1	16	100	0	66	24	18	24	33	1.97
14909--14963	28	2.0	28	85	3	76	29	18	14	38	1.90
15097--15200	30	3.4	31	86	4	140	40	9	16	33	1.81
15643--15990	185	1.9	184	89	1	536	35	10	3	50	1.52
16222--16315	31	3.0	30	81	9	109	35	12	11	40	1.80
16402--16495	30	3.1	30	90	4	136	40	12	13	32	1.83
18300--18663	182	2.0	180	87	3	525	35	10	3	49	1.56
18915--18978	31	2.1	31	85	5	85	32	14	14	39	1.85
19029--19091	31	2.0	31	93	0	108	25	26	17	30	1.97
21814--22182	182	2.0	182	96	0	686	31	13	24	30	1.93
25045--25258	44	4.8	44	73	7	144	41	8	15	34	1.79
25198--25258	23	2.7	23	89	2	97	44	6	8	40	1.60
25198--25296	44	2.2	45	85	5	130	41	9	9	40	1.68
25063--25301	22	10.7	22	72	10	112	41	10	13	35	1.78
33779--33805	12	2.2	12	100	0	54	33	40	25	0	1.56
35295--35356	29	2.1	29	82	5	72	50	11	17	20	1.77
37245--37301	21	2.4	25	72	27	68	22	10	14	52	1.71
37257--37303	21	2.2	21	100	0	94	27	12	10	48	1.74
43594--43876	140	2.0	140	98	0	548	25	19	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48077--48113	2	18.5	2	100	0	74	51	0	48	0	1.00
53944--54010	21	3.2	21	66	16	57	49	14	7	28	1.71
53932--54011	42	1.9	42	94	0	142	46	16	7	30	1.74
54512--54590	31	2.5	31	89	0	113	27	15	25	31	1.95
57269--57347	31	2.5	31	85	0	113	31	27	13	26	1.94
61267--61309	21	2.0	21	86	8	61	37	11	23	27	1.89
61770--62101	46	7.2	46	96	0	583	29	28	10	31	1.90
61927--62094	23	7.3	23	62	22	75	29	30	10	29	1.90
72529--72607	31	2.5	31	93	0	131	31	27	13	26	1.94
73781--74163	203	1.9	202	83	6	497	34	17	19	28	1.94
78225--78388	85	1.9	82	86	9	231	29	15	11	42	1.83
83286--83400	57	2.0	57	100	0	230	24	15	20	39	1.92
87227--87270	2	21.5	2	86	4	61	47	6	0	45	1.29
90481--90557	15	5.1	14	69	12	55	63	5	5	25	1.36
90470--90557	30	2.9	30	96	0	158	61	4	5	28	1.39
91641--91688	24	2.0	24	91	0	78	35	31	2	31	1.70
94377--94446	22	3.2	22	79	6	88	42	7	11	38	1.68
96352--96461	58	1.9	58	88	3	168	30	14	23	30	1.94

Tables:   1

The End!