Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019803.1 Corchorus olitorius cultivar O-4 contig19836, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29723

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2891--2933
22
1.9
23
85
4
61
46
2
13
37
1.57
5928--5968
20
2.0
20
90
0
64
43
9
17
29
1.80
6011--6067
21
2.7
22
84
7
66
38
10
8
42
1.71
7665--7784
48
2.5
48
93
0
213
12
7
30
50
1.68
20112--20205
45
2.2
43
90
7
147
38
22
5
34
1.77
25016--25091
38
2.0
38
84
5
100
51
23
9
15
1.72
25803--25847
20
2.4
19
81
7
56
46
20
8
24
1.78
28212--28248
6
6.3
6
84
15
51
35
48
16
0
1.46
28294--28337
16
2.8
16
89
0
70
36
40
15
6
1.74
28327--28371
11
3.9
12
81
18
60
24
51
24
0
1.49
28328--28371
17
2.6
17
88
0
70
25
50
25
0
1.50
29165--29204
12
3.5
11
86
6
53
27
52
20
0
1.46
29166--29200
17
2.1
17
100
0
70
25
51
22
0
1.48
29167--29223
23
2.5
23
85
0
78
22
49
22
5
1.70
29228--29288
16
3.8
16
72
8
61
39
39
13
8
1.74
29220--29287
32
2.1
32
88
0
100
38
39
13
8
1.75

Tables:   1

The End!