Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019804.1 Corchorus olitorius cultivar O-4 contig19837, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14792
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34


Found at i:2021 original size:2 final size:2

Alignment explanation


    Indices: 2014--2046  Score: 52
    Period size: 2  Copynumber: 17.5  Consensus size: 2

       2004 AAACAAATGT

                                                                
       2014 TA TA TA TA TA TA TA TA TA T- TA TA T- TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       2047 TAGTAGTCAT


Statistics
Matches: 29,  Mismatches: 0, Indels: 4
        0.88            0.00        0.12

Matches are distributed among these distances:
   1    2  0.07
   2   27  0.93

ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55


Consensus pattern (2 bp):   
TA

Done.