Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019808.1 Corchorus olitorius cultivar O-4 contig19841, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134630

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
797--821
3
8.3
3
100
0
50
68
0
0
32
0.90
6729--6764
19
1.9
18
88
5
54
27
22
8
41
1.82
11427--11468
15
2.7
15
92
3
66
11
9
14
64
1.50
30008--30220
22
9.6
22
74
6
135
37
17
11
34
1.85
30009--30241
66
3.5
66
86
1
270
36
15
11
35
1.84
30074--30269
44
4.5
43
73
8
171
36
14
12
37
1.83
30095--30264
22
7.7
22
76
2
81
35
12
12
38
1.81
32489--32700
22
9.6
22
73
10
123
35
13
11
39
1.81
32515--32682
66
2.5
65
77
5
167
35
14
11
38
1.83
41082--41597
120
4.3
120
83
7
545
37
14
18
30
1.90
41080--41597
238
2.2
240
81
7
583
37
14
17
30
1.90
46824--46953
65
2.0
65
92
3
217
39
16
11
32
1.85
57584--57673
33
2.7
34
79
10
105
36
11
12
40
1.78
58057--58123
7
8.4
7
76
23
62
62
0
0
37
0.95
58057--58121
25
2.6
25
100
0
130
63
0
0
36
0.95
58343--58377
18
1.9
18
94
0
61
31
11
14
42
1.81
59087--59188
26
3.8
26
88
8
159
36
3
5
53
1.43
62320--62522
101
2.0
101
95
0
361
29
3
22
44
1.69
64557--64625
30
2.3
29
85
9
86
49
8
8
33
1.64
65532--65556
11
2.3
11
100
0
50
36
16
0
48
1.46
65887--65944
28
2.1
28
83
0
71
34
10
10
44
1.73
68583--68629
25
2.0
24
87
8
69
29
4
10
55
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76249--76422
75
2.3
75
77
3
172
37
16
14
30
1.89
80578--80602
13
1.9
13
100
0
50
56
24
4
16
1.57
82763--83444
351
1.9
351
87
1
1001
31
17
17
33
1.93
83988--84038
26
2.0
26
96
0
93
41
3
3
50
1.39
93391--93447
29
2.0
29
82
0
69
31
22
3
42
1.71
95152--95256
33
3.2
33
66
15
90
35
0
14
49
1.50
95123--95257
66
2.0
66
98
0
261
32
2
15
49
1.57
98100--98133
17
2.0
17
88
0
50
20
8
2
67
1.31
99194--99227
15
2.3
15
94
0
59
73
2
14
8
1.19
99879--99930
27
2.0
26
84
3
68
38
0
3
57
1.17
99889--99927
20
2.0
20
94
0
69
38
0
5
56
1.22
101961--102019
21
2.8
22
79
7
59
18
15
20
45
1.85
101928--102074
77
1.9
77
91
1
242
21
12
20
44
1.85
105410--105625
53
4.1
53
96
0
396
51
17
6
24
1.70
106631--106660
2
15.0
2
92
0
51
46
0
3
50
1.18
107592--107642
25
2.0
25
85
7
68
39
0
0
60
0.97
107562--107644
22
3.8
21
74
19
73
38
1
1
59
1.13
124436--124488
3
17.7
3
96
0
97
30
0
0
69
0.88
129197--129261
3
21.7
3
100
0
130
32
0
0
67
0.91
132133--132267
40
3.4
40
90
1
200
14
40
39
5
1.69
132167--132259
14
7.0
14
71
9
70
11
41
41
4
1.61

Tables:   1

The End!