Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019810.1 Corchorus olitorius cultivar O-4 contig19843, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7361

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2365--2591
111
2.1
110
94
0
400
21
22
22
33
1.98
2949--3097
14
11.1
14
66
8
76
20
16
31
31
1.95
2912--3173
53
4.9
53
96
0
461
20
17
31
30
1.95
3190--3258
14
4.9
14
89
0
102
18
15
30
34
1.93
3190--3270
28
2.9
28
90
0
117
20
14
28
35
1.93
3310--3383
19
3.7
19
72
13
67
21
17
32
28
1.96
3329--3406
23
3.6
23
74
13
92
23
20
32
24
1.98
3307--3414
42
2.6
42
98
0
207
21
18
33
26
1.96
3473--3617
77
1.9
78
92
1
247
26
20
19
33
1.97
3610--3670
30
2.0
30
96
0
113
19
31
19
29
1.97
3760--3870
55
2.0
55
98
0
213
21
28
18
31
1.97
4089--4373
46
6.3
46
84
6
359
29
22
16
31
1.96
4089--4373
93
3.2
92
84
5
361
29
22
16
31
1.96
4286--4363
39
2.0
40
92
2
131
32
25
12
29
1.93
6106--6158
26
2.0
26
92
0
88
20
20
28
30
1.98
6226--6254
3
9.7
3
100
0
58
68
0
0
31
0.89
6354--6384
13
2.4
13
94
0
53
25
9
29
35
1.88

Tables:   1

The End!